Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028271.1

Orthogroup ID

OG0006717

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3016

Gene Structure 3016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028271.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1511 bp

ttttaagtgtggtgcaggataagaggaaagatgctgttaagaaggtgattgctgcaatgacagttgggaaggatgtctcgtcgcttttcacggatgtagtgaattgcatgcaaacagaaaatttggagctgaagaagctggtttatttgtatctgataaattatgctaaaagccagcctgacctagcaattcttgctgtgaatacatttgtcaaggattcacaggacccaaatcctttgattcgcgctttagccgttcggacaatgggatgcattcgtgttgataaaattacagaatatctatgtgatccccttcagagatgccttaaggatgatgatccatatgttcgcaagacagcagccatatgtgtcgccaaactttacgacataaatgctgagttagttgaggataggggtttcctggaatctctcaaggatttgatttctgataataatcctatggttgttgcaaatgctgtggctgcgcttgctgaaattcaagagaatagtaatagacccatctttgagatgaccagtcacactctgacaaagctccttactgcattgaatgaatgcacagagtggggacaagtatttatactggatgctctttctagatacaaggcagctgatgcccgtgaagctgaaaatatagtagagcgagttaccccgcgactacagcatgctaactgtgctgtcgtgctttcagctgtaaagatgatcctccaacaaatggaacttatcaccagtaccgatgttgtcagaaatctttgcaaaaagatggctcctccactcgtgacactactctctgctgagcctgagatacaatatgttgcattaagaaacatcaaccttatagtacaaagacggcccacaattcttgctcatgaaattaaggtattcttttgcaagtacaatgatcctatttatgtaaagatggaaaagttagaaattatgataaagcttgcttcagatcgaaacatagaccaggttctattggagtttaaagagtatgctactgaagtagatgttgattttgtccgaaaggctgtccgtgccattggtcgctgtgccatcaaattagaaagagcagctgaacggtgcattactgtattacttgagttgattaagatcaaagtcaattacgtagttcaagaggccattattgtcatcaaagatatctttagaagatatcccaatacctatgaatccatcattgcaactctatgcgaaagcctagacactttagatgaaccagaagccaaggcatcgatgatctggataattggtgaatatgcggaaagaattgacaatgctgatgagctccttgaaagctttctggaaagtttccccgaagaacctgcacatgtccaattgcagttgctgactgcaactgtcaaactttttcttaaaaagcccaccgaaggaccacaacagatgattcaggttttgcttttgtattctccacatcttttatccttcctgggttatattctccttgattcgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N Alpha_adaptinC2 B2-adapt-app_C

Protein Analysis

502

Amino Acids

56.91

Weight (kDa)

5.34

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11380 AT4G11380 AT4G23460 AT4G23460
fragaria_vesca	FvH4_5g02830 FvH4_5g02830
malus_domestica	MD06G1087800.v1.1 MD14G1108600.v1.1
prunus_persica	Prupe.5G103900_v2.0.a1 Prupe.5G103900_v2.0.a1
pyrus_communis	pycom06g08390 pycom14g10320
rosa_chinensis	RchiOBHm_Chr7g0197091
rosa_laevigata	RLG00000003961
rosa_multiflora	Rmu_co8387167.1_g000001 Rmu_sc0028271.1_g000001 Rmu_ssc0000465.1_g000025
rosa_roxburghii	Rroxscaffold_3G00258680
rosa_rugosa	Rorug07G0037500 Rorug07G0037600 Rorug07G0037700
rosa_samantha	Rh7AG162500 Rh7BG164500 Rh7CG170600 Rh7DG163900
rosa_wichuraiana	Rw7G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1368
AccB7I	CCANNNNNTGG	1 cut(s)	732
AccII	CGCG	2 cut(s)	245, 672
AciI	CCGC	2 cut(s)	670, 1297
AclWI	GGATC	4 cut(s)	301, 331, 714, 913
AcsI	RAATTY	2 cut(s)	120, 494
AcuI	CTGAAG	4 cut(s)	151, 298, 953, 1040
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	3 cut(s)	750, 860, 913
AfiI	CCNNNNNNNGG	2 cut(s)	732, 1423
AflII	CTTAAG	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	1365
AgsI	TTSAA	4 cut(s)	499, 567, 1153, 1330
AjnI	CCWGG	3 cut(s)	419, 986, 1481
Alw21I	GWGCWC	1 cut(s)	1325
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	4 cut(s)	301, 331, 714, 913
AlwNI	CAGNNNCTG	1 cut(s)	1383
AoxI	GGCC	2 cut(s)	868, 1157
ApeKI	GCWGC	5 cut(s)	52, 358, 481, 625, 1090
ApoI	RAATTY	2 cut(s)	120, 494
Asp700I	GAANNNNTTC	1 cut(s)	1334
AspLEI	GCGC	2 cut(s)	247, 486
AspS9I	GGNCC	3 cut(s)	225, 869, 1426
AsuHPI	GGTGA	3 cut(s)	57, 735, 1300
AvaII	GGWCC	2 cut(s)	225, 1426
BanII	GRGCYC	1 cut(s)	1325
BauI	CACGAG	1 cut(s)	793
Bbv12I	GWGCWC	1 cut(s)	1325
BbvI	GCAGC	5 cut(s)	39, 370, 468, 637, 1102
BccI	CCATC	5 cut(s)	526, 774, 930, 1081, 1219
BceAI	ACGGC	2 cut(s)	238, 883
BcgI	CGANNNNNNTGC	4 cut(s)	373, 407, 1342, 1376
BciT130I	CCWGG	3 cut(s)	421, 988, 1483
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	3 cut(s)	184, 614, 1237
BfmI	CTRYAG	1 cut(s)	676
BfrI	CTTAAG	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	1368
BisI	GCNGC	5 cut(s)	53, 359, 482, 626, 1091
BlpI	GCTNAGC	1 cut(s)	812
BlsI	GCNGC	5 cut(s)	54, 360, 483, 627, 1092
Bme1390I	CCNGG	3 cut(s)	421, 988, 1483
Bme18I	GGWCC	2 cut(s)	225, 1426
BmgT120I	GGNCC	3 cut(s)	225, 869, 1426
BmiI	GGNNCC	2 cut(s)	227, 785
BmrFI	CCNGG	3 cut(s)	421, 988, 1483
BmsI	GCATC	6 cut(s)	21, 259, 310, 594, 621, 1276
Bpu1102I	GCTNAGC	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	415, 1138
Bsa29I	ATCGAT	1 cut(s)	1270
BsaAI	YACGTR	1 cut(s)	1146
BsaBI	GATNNNNATC	3 cut(s)	335, 452, 1129
BsaJI	CCNNGG	2 cut(s)	1262, 1482
Bsc4I	CCNNNNNNNGG	2 cut(s)	732, 1423
Bse1I	ACTGG	3 cut(s)	533, 605, 746
Bse3DI	GCAATG	2 cut(s)	62, 1214
Bse8I	GATNNNNATC	3 cut(s)	335, 452, 1129
BseBI	CCWGG	3 cut(s)	421, 988, 1483
BseCI	ATCGAT	1 cut(s)	1270
BseDI	CCNNGG	2 cut(s)	1262, 1482
BseGI	GGATG	5 cut(s)	78, 99, 274, 336, 609
BseJI	GATNNNNATC	3 cut(s)	335, 452, 1129
BseLI	CCNNNNNNNGG	2 cut(s)	732, 1423
BseMI	GCAATG	2 cut(s)	62, 1214
BseMII	CTCAG	3 cut(s)	386, 803, 809
BseNI	ACTGG	3 cut(s)	533, 605, 746
BseRI	GAGGAG	1 cut(s)	776
BseXI	GCAGC	5 cut(s)	39, 370, 468, 637, 1102
BsgI	GTGCAG	2 cut(s)	34, 1346
Bsh1236I	CGCG	2 cut(s)	245, 672
BshFI	GGCC	2 cut(s)	870, 1159
BshVI	ATCGAT	1 cut(s)	1270
BsiHKAI	GWGCWC	1 cut(s)	1325
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	732, 1423
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	599
BsmI	GAATGC	2 cut(s)	272, 577
BsnI	GGCC	2 cut(s)	870, 1159
Bsp1286I	GDGCHC	1 cut(s)	1325
Bsp143I	GATC	7 cut(s)	306, 336, 719, 918, 972, 1130, 1274
Bsp1720I	GCTNAGC	1 cut(s)	812
BspACI	CCGC	2 cut(s)	670, 1297
BspANI	GGCC	2 cut(s)	870, 1159
BspCNI	CTCAG	3 cut(s)	387, 804, 810
BspDI	ATCGAT	1 cut(s)	1270
BspFNI	CGCG	2 cut(s)	245, 672
BspHI	TCATGA	1 cut(s)	885
BspLI	GGNNCC	2 cut(s)	227, 785
BspMI	ACCTGC	1 cut(s)	1368
BspPI	GGATC	4 cut(s)	301, 331, 714, 913
BspTI	CTTAAG	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	62, 1214
BsrI	ACTGG	3 cut(s)	533, 605, 746
BssECI	CCNNGG	2 cut(s)	1262, 1482
BssMI	GATC	7 cut(s)	306, 336, 719, 918, 972, 1130, 1274
BssSI	CACGAG	1 cut(s)	793
BssT1I	CCWWGG	1 cut(s)	1262
Bst2BI	CACGAG	1 cut(s)	793
Bst2UI	CCWGG	3 cut(s)	421, 988, 1483
Bst4CI	ACNGT	5 cut(s)	63, 691, 1100, 1110, 1395
BstAFI	CTTAAG	1 cut(s)	325
BstAPI	GCANNNNNTGC	2 cut(s)	193, 631
BstBAI	YACGTR	1 cut(s)	1146
BstC8I	GCNNGC	5 cut(s)	109, 175, 488, 683, 965
BstDEI	CTNAG	3 cut(s)	395, 812, 818
BstF5I	GGATG	5 cut(s)	78, 99, 274, 336, 609
BstFNI	CGCG	2 cut(s)	245, 672
BstHHI	GCGC	2 cut(s)	247, 486
BstKTI	GATC	7 cut(s)	309, 339, 722, 921, 975, 1133, 1277
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	7 cut(s)	306, 336, 719, 918, 972, 1130, 1274
BstMWI	GCNNNNNNNGC	9 cut(s)	135, 193, 481, 487, 631, 640, 678, 691, 1054
BstNI	CCWGG	3 cut(s)	421, 988, 1483
BstNSI	RCATGY	3 cut(s)	111, 685, 1369
BstSCI	CCNGG	3 cut(s)	419, 986, 1481
BstSFI	CTRYAG	1 cut(s)	676
BstSNI	TACGTA	1 cut(s)	1146
BstUI	CGCG	2 cut(s)	245, 672
BstV1I	GCAGC	5 cut(s)	39, 370, 468, 637, 1102
Bsu15I	ATCGAT	1 cut(s)	1270
BsuRI	GGCC	2 cut(s)	870, 1159
BsuTUI	ATCGAT	1 cut(s)	1270
BtsCI	GGATG	5 cut(s)	78, 99, 274, 336, 609
BveI	ACCTGC	1 cut(s)	1368
Cac8I	GCNNGC	5 cut(s)	109, 175, 488, 683, 965
CaiI	CAGNNNCTG	1 cut(s)	1383
CciI	TCATGA	1 cut(s)	885
CfoI	GCGC	2 cut(s)	247, 486
Cfr13I	GGNCC	3 cut(s)	225, 869, 1426
ClaI	ATCGAT	1 cut(s)	1270
CsiI	ACCWGGT	1 cut(s)	986
Csp6I	GTAC	3 cut(s)	749, 859, 912
CspCI	CAANNNNNGTGG	4 cut(s)	458, 493, 861, 896
CviAII	CATG	4 cut(s)	108, 682, 886, 1366
CviQI	GTAC	3 cut(s)	749, 859, 912
DdeI	CTNAG	3 cut(s)	395, 812, 818
DpnI	GATC	7 cut(s)	308, 338, 721, 920, 974, 1132, 1276
DpnII	GATC	7 cut(s)	306, 336, 719, 918, 972, 1130, 1274
DraI	TTTAAA	1 cut(s)	1005
DraIII	CACNNNGTG	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	1323
Eco105I	TACGTA	1 cut(s)	1146
Eco130I	CCWWGG	1 cut(s)	1262
Eco24I	GRGCYC	1 cut(s)	1325
Eco32I	GATATC	2 cut(s)	1179, 1192
Eco47I	GGWCC	2 cut(s)	225, 1426
Eco53kI	GAGCTC	1 cut(s)	1323
Eco57I	CTGAAG	4 cut(s)	151, 298, 953, 1040
EcoICRI	GAGCTC	1 cut(s)	1323
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	3 cut(s)	419, 986, 1481
EcoRV	GATATC	2 cut(s)	1179, 1192
EcoT14I	CCWWGG	1 cut(s)	1262
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	1325
ErhI	CCWWGG	1 cut(s)	1262
FaeI	CATG	4 cut(s)	111, 685, 889, 1369
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	4 cut(s)	107, 681, 885, 1365
FauI	CCCGC	1 cut(s)	677
FauNDI	CATATG	2 cut(s)	342, 364
Fnu4HI	GCNGC	5 cut(s)	53, 359, 482, 626, 1091
FokI	GGATG	5 cut(s)	85, 106, 281, 343, 616
FriOI	GRGCYC	1 cut(s)	1325
Fsp4HI	GCNGC	5 cut(s)	53, 359, 482, 626, 1091
FspBI	CTAG	3 cut(s)	184, 614, 1237
GlaI	GCGC	2 cut(s)	246, 485
GluI	GCNGC	5 cut(s)	53, 359, 482, 626, 1091
HaeIII	GGCC	2 cut(s)	870, 1159
HhaI	GCGC	2 cut(s)	247, 486
Hin1II	CATG	4 cut(s)	111, 685, 889, 1369
Hin6I	GCGC	2 cut(s)	245, 484
HinP1I	GCGC	2 cut(s)	245, 484
HindIII	AAGCTT	2 cut(s)	961, 1332
HinfI	GANTC	6 cut(s)	217, 240, 424, 1207, 1440, 1501
HphI	GGTGA	3 cut(s)	57, 735, 1300
Hpy188I	TCNGA	8 cut(s)	155, 260, 317, 447, 545, 763, 972, 1042
Hpy188III	TCNNGA	7 cut(s)	499, 614, 795, 886, 1153, 1278, 1339
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	5 cut(s)	36, 63, 322, 1417, 1488
HpyCH4III	ACNGT	5 cut(s)	63, 691, 1100, 1110, 1395
HpyCH4IV	ACGT	1 cut(s)	1145
HpyF10VI	GCNNNNNNNGC	9 cut(s)	135, 193, 481, 487, 631, 640, 678, 691, 1054
HpyF3I	CTNAG	3 cut(s)	395, 812, 818
HpySE526I	ACGT	1 cut(s)	1145
Hsp92II	CATG	4 cut(s)	111, 685, 889, 1369
HspAI	GCGC	2 cut(s)	245, 484
Kzo9I	GATC	7 cut(s)	306, 336, 719, 918, 972, 1130, 1274
LmnI	GCTCC	4 cut(s)	126, 557, 789, 1328
Lsp1109I	GCAGC	5 cut(s)	39, 370, 468, 637, 1102
LweI	GCATC	6 cut(s)	21, 259, 310, 594, 621, 1276
MabI	ACCWGGT	1 cut(s)	986
MaeI	CTAG	3 cut(s)	184, 614, 1237
MaeII	ACGT	1 cut(s)	1145
MaeIII	GTNAC	3 cut(s)	535, 663, 795
MalI	GATC	7 cut(s)	308, 338, 721, 920, 974, 1132, 1276
MboI	GATC	7 cut(s)	306, 336, 719, 918, 972, 1130, 1274
MboII	GAAGA	3 cut(s)	144, 1199, 1366
MfeI	CAATTG	1 cut(s)	1372
MhlI	GDGCHC	1 cut(s)	1325
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	5 cut(s)	17, 399, 733, 797, 1149
Mph1103I	ATGCAT	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	1334
MseI	TTAA	9 cut(s)	4, 38, 326, 838, 893, 1004, 1127, 1409, 1509
MspA1I	CMGCKG	3 cut(s)	628, 709, 1093
MspCI	CTTAAG	1 cut(s)	325
MspR9I	CCNGG	3 cut(s)	421, 988, 1483
MunI	CAATTG	1 cut(s)	1372
Mva1269I	GAATGC	2 cut(s)	272, 577
MvaI	CCWGG	3 cut(s)	421, 988, 1483
MvnI	CGCG	2 cut(s)	245, 672
MwoI	GCNNNNNNNGC	9 cut(s)	135, 193, 481, 487, 631, 640, 678, 691, 1054
NdeI	CATATG	2 cut(s)	342, 364
NdeII	GATC	7 cut(s)	306, 336, 719, 918, 972, 1130, 1274
NlaIII	CATG	4 cut(s)	111, 685, 889, 1369
NlaIV	GGNNCC	2 cut(s)	227, 785
NmuCI	GTSAC	2 cut(s)	535, 795
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	3 cut(s)	111, 685, 1369
PaeI	GCATGC	2 cut(s)	111, 685
PagI	TCATGA	1 cut(s)	885
PciI	ACATGT	1 cut(s)	1365
PctI	GAATGC	2 cut(s)	272, 577
PdmI	GAANNNNTTC	1 cut(s)	1334
PfeI	GAWTC	6 cut(s)	217, 240, 424, 1207, 1440, 1501
PflMI	CCANNNNNTGG	1 cut(s)	732
PfoI	TCCNGGA	1 cut(s)	419
PkrI	GCNGC	5 cut(s)	54, 360, 483, 627, 1092
Ppu21I	YACGTR	1 cut(s)	1146
PpuMI	RGGWCCY	1 cut(s)	225
PscI	ACATGT	1 cut(s)	1365
Psp124BI	GAGCTC	1 cut(s)	1325
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	419, 986, 1481
PspGI	CCWGG	3 cut(s)	419, 986, 1481
PspN4I	GGNNCC	2 cut(s)	227, 785
PspPI	GGNCC	3 cut(s)	225, 869, 1426
PspPPI	RGGWCCY	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	1383
PvuII	CAGCTG	3 cut(s)	628, 709, 1093
RsaI	GTAC	3 cut(s)	750, 860, 913
RsaNI	GTAC	3 cut(s)	749, 859, 912
SacI	GAGCTC	1 cut(s)	1325
SaqAI	TTAA	9 cut(s)	4, 38, 326, 838, 893, 1004, 1127, 1409, 1509
SatI	GCNGC	5 cut(s)	53, 359, 482, 626, 1091
Sau3AI	GATC	7 cut(s)	306, 336, 719, 918, 972, 1130, 1274
Sau96I	GGNCC	3 cut(s)	225, 869, 1426
ScrFI	CCNGG	3 cut(s)	421, 988, 1483
SduI	GDGCHC	1 cut(s)	1325
SexAI	ACCWGGT	1 cut(s)	986
SfaNI	GCATC	6 cut(s)	21, 259, 310, 594, 621, 1276
SfcI	CTRYAG	1 cut(s)	676
SinI	GGWCC	2 cut(s)	225, 1426
SmlI	CTYRAG	3 cut(s)	325, 430, 1117
SmoI	CTYRAG	3 cut(s)	325, 430, 1117
SnaBI	TACGTA	1 cut(s)	1146
SphI	GCATGC	2 cut(s)	111, 685
SsiI	CCGC	2 cut(s)	670, 1297
SspMI	CTAG	3 cut(s)	184, 614, 1237
SstI	GAGCTC	1 cut(s)	1325
StyD4I	CCNGG	3 cut(s)	419, 986, 1481
StyI	CCWWGG	1 cut(s)	1262
TaaI	ACNGT	5 cut(s)	63, 691, 1100, 1110, 1395
TaiI	ACGT	1 cut(s)	1148
TaqI	TCGA	2 cut(s)	975, 1270
TatI	WGTACW	2 cut(s)	858, 911
TfiI	GAWTC	6 cut(s)	217, 240, 424, 1207, 1440, 1501
Tru1I	TTAA	9 cut(s)	4, 38, 326, 838, 893, 1004, 1127, 1409, 1509
Tru9I	TTAA	9 cut(s)	4, 38, 326, 838, 893, 1004, 1127, 1409, 1509
TseFI	GTSAC	2 cut(s)	535, 795
TseI	GCWGC	5 cut(s)	52, 358, 481, 625, 1090
Tsp45I	GTSAC	2 cut(s)	535, 795
TspDTI	ATGAA	4 cut(s)	584, 902, 1220, 1265
TspGWI	ACGGA	2 cut(s)	106, 1042
Van91I	CCANNNNNTGG	1 cut(s)	732
Vha464I	CTTAAG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	225, 1426
XapI	RAATTY	2 cut(s)	120, 494
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	3 cut(s)	111, 685, 1369
XmnI	GAANNNNTTC	1 cut(s)	1334
XspI	CTAG	3 cut(s)	184, 614, 1237
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.