Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000465.1

Orthogroup ID

OG0006717

Physical Location & Seq

Genomic Coordinates Reverse (-)

106767 .. 108718

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000465.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 821 bp

acttacttggtgatctgattggcctggataacagtgccattgtccctgtggatcagcctgctgctcctgctgggtgtgtacatcaaagttttgaggcacttactggattttctgactttgattgcagacctccgttgcctgtcttactaccagcatcaactggtcaaggtttacaaatcagtgctcagttgacacgcagggatggtcaaatattttacagtatattgtttgagaacaacacacaggtcccattagatgggtttatgattcagttcaacaaaaatactttcggtcttgcagctgctggaccccttcaggttccacaaattcaaccggggacatcagcagggactctcctgcctatggttacgttccagaatttgtctcaaggtcctccaagctcattattgcaggttgctgtgaaaaacaatcaacaacctgtctggtacttcaacgataaaatcccattgcatgtcttctttaccgaggatggcagaatggagcgtgcaaattttcttgagacttggagatcccttcctgattcaaatgagattacaaaagacttccctggaattgtggtgggtaatgttgaagcaactctggaccgcctggctgctacaaacatgttctttattgcgaagcgaaaacacgccaaccaggatgtcttctatttctctgcaaagatacctcgaggaatacccttcctaattgaactcactacagtagtaaatacccctggggtcaagtgcgcaatcaagactccaagcccagaatcagcaccccttttctttgaagctgtggagacactcctgaaggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adaptin_N Alpha_adaptinC2 B2-adapt-app_C

Protein Analysis

272

Amino Acids

29.73

Weight (kDa)

5.1

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11380 AT4G11380 AT4G23460 AT4G23460
fragaria_vesca	FvH4_5g02830 FvH4_5g02830
malus_domestica	MD06G1087800.v1.1 MD14G1108600.v1.1
prunus_persica	Prupe.5G103900_v2.0.a1 Prupe.5G103900_v2.0.a1
pyrus_communis	pycom06g08390 pycom14g10320
rosa_chinensis	RchiOBHm_Chr7g0197091
rosa_laevigata	RLG00000003961
rosa_multiflora	Rmu_co8387167.1_g000001 Rmu_sc0028271.1_g000001 Rmu_ssc0000465.1_g000025
rosa_roxburghii	Rroxscaffold_3G00258680
rosa_rugosa	Rorug07G0037500 Rorug07G0037600 Rorug07G0037700
rosa_samantha	Rh7AG162500 Rh7BG164500 Rh7CG170600 Rh7DG163900
rosa_wichuraiana	Rw7G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	689
Acc16I	TGCGCA	1 cut(s)	750
Acc36I	ACCTGC	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	256
AciI	CCGC	1 cut(s)	606
AclWI	GGATC	2 cut(s)	59, 524
AcsI	RAATTY	3 cut(s)	326, 378, 510
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	2 cut(s)	80, 448
AfiI	CCNNNNNNNGG	2 cut(s)	256, 363
AflIII	ACRYGT	1 cut(s)	623
AgsI	TTSAA	7 cut(s)	276, 331, 453, 545, 592, 712, 793
AjnI	CCWGG	5 cut(s)	23, 567, 608, 656, 735
AluBI	AGCT	3 cut(s)	301, 401, 796
AluI	AGCT	3 cut(s)	301, 401, 796
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	3 cut(s)	389, 514, 796
AlwI	GGATC	2 cut(s)	59, 524
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	4 cut(s)	61, 298, 301, 613
ApoI	RAATTY	3 cut(s)	326, 378, 510
AspLEI	GCGC	1 cut(s)	751
AspS9I	GGNCC	4 cut(s)	246, 307, 391, 603
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	4 cut(s)	246, 307, 391, 603
BbsI	GAAGAC	2 cut(s)	468, 657
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	48, 288, 310, 600
BccI	CCATC	3 cut(s)	196, 250, 484
BciT130I	CCWGG	5 cut(s)	25, 569, 610, 658, 737
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	389, 514, 796
BfmI	CTRYAG	1 cut(s)	719
BfuAI	ACCTGC	1 cut(s)	402
BisI	GCNGC	4 cut(s)	62, 299, 302, 614
BlsI	GCNGC	4 cut(s)	63, 300, 303, 615
Bme1390I	CCNGG	6 cut(s)	25, 335, 569, 610, 658, 737
Bme18I	GGWCC	4 cut(s)	246, 307, 391, 603
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	4 cut(s)	246, 307, 391, 603
BmiI	GGNNCC	3 cut(s)	248, 309, 320
BmrFI	CCNGG	6 cut(s)	25, 335, 569, 610, 658, 737
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	2 cut(s)	468, 657
BpuEI	CTTGAG	2 cut(s)	371, 538
BpuMI	CCSGG	1 cut(s)	335
BsaJI	CCNNGG	5 cut(s)	334, 485, 567, 735, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 363
Bse1I	ACTGG	2 cut(s)	108, 165
Bse3DI	GCAATG	1 cut(s)	466
BseBI	CCWGG	5 cut(s)	25, 569, 610, 658, 737
BseDI	CCNNGG	5 cut(s)	334, 485, 567, 735, 736
BseGI	GGATG	3 cut(s)	207, 495, 666
BseLI	CCNNNNNNNGG	2 cut(s)	256, 363
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	2 cut(s)	108, 165
BseXI	GCAGC	4 cut(s)	48, 288, 310, 600
BseYI	CCCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	4 cut(s)	28, 232, 351, 363
BslI	CCNNNNNNNGG	2 cut(s)	256, 363
BsmAI	GTCTC	3 cut(s)	389, 514, 796
BsmFI	GGGAC	4 cut(s)	28, 232, 351, 363
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	12, 51, 529
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	248, 309, 320
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	2 cut(s)	59, 524
BsrDI	GCAATG	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	108, 165
BssECI	CCNNGG	5 cut(s)	334, 485, 567, 735, 736
BssMI	GATC	3 cut(s)	12, 51, 529
Bst2UI	CCWGG	5 cut(s)	25, 569, 610, 658, 737
Bst4CI	ACNGT	3 cut(s)	34, 220, 723
BstAUI	TGTACA	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	59, 506
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	3 cut(s)	207, 495, 666
BstHHI	GCGC	1 cut(s)	751
BstKTI	GATC	3 cut(s)	15, 54, 532
BstMAI	GTCTC	3 cut(s)	389, 514, 796
BstMBI	GATC	3 cut(s)	12, 51, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	5 cut(s)	25, 569, 610, 658, 737
BstNSI	RCATGY	2 cut(s)	475, 627
BstSCI	CCNGG	6 cut(s)	23, 333, 567, 608, 656, 735
BstSFI	CTRYAG	1 cut(s)	719
BstV1I	GCAGC	4 cut(s)	48, 288, 310, 600
BstV2I	GAAGAC	2 cut(s)	468, 657
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	207, 495, 666
BtsIMutI	CAGTG	2 cut(s)	39, 186
BveI	ACCTGC	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	59, 506
CaiI	CAGNNNCTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	751
Cfr13I	GGNCC	4 cut(s)	246, 307, 391, 603
Csp6I	GTAC	2 cut(s)	79, 447
CviAII	CATG	2 cut(s)	472, 624
CviJI	RGCY	7 cut(s)	23, 57, 301, 401, 613, 767, 796
CviKI_1	RGCY	7 cut(s)	23, 57, 301, 401, 613, 767, 796
CviQI	GTAC	2 cut(s)	79, 447
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	3 cut(s)	14, 53, 531
DpnII	GATC	3 cut(s)	12, 51, 529
Eco47I	GGWCC	4 cut(s)	246, 307, 391, 603
Eco57I	CTGAAG	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	689
EcoO109I	RGGNCCY	2 cut(s)	246, 391
EcoRII	CCWGG	5 cut(s)	23, 567, 608, 656, 735
FaeI	CATG	2 cut(s)	475, 627
FaiI	YATR	5 cut(s)	223, 265, 364, 473, 625
FaqI	GGGAC	4 cut(s)	28, 232, 351, 363
FatI	CATG	2 cut(s)	471, 623
Fnu4HI	GCNGC	4 cut(s)	62, 299, 302, 614
FokI	GGATG	3 cut(s)	214, 502, 673
Fsp4HI	GCNGC	4 cut(s)	62, 299, 302, 614
FspI	TGCGCA	1 cut(s)	750
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	4 cut(s)	62, 299, 302, 614
GsaI	CCCAGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	751
Hin1II	CATG	2 cut(s)	475, 627
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	5 cut(s)	267, 351, 541, 759, 772
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	79, 172, 191
Hpy188I	TCNGA	2 cut(s)	17, 114
Hpy188III	TCNNGA	6 cut(s)	375, 517, 538, 601, 756, 810
Hpy8I	GTNNAC	3 cut(s)	79, 172, 191
HpyAV	CCTTC	4 cut(s)	322, 544, 711, 807
HpyCH4III	ACNGT	3 cut(s)	34, 220, 723
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	6 cut(s)	125, 298, 411, 471, 508, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	475, 627
HspAI	GCGC	1 cut(s)	749
Kzo9I	GATC	3 cut(s)	12, 51, 529
LmnI	GCTCC	2 cut(s)	69, 501
Lsp1109I	GCAGC	4 cut(s)	48, 288, 310, 600
LweI	GCATC	1 cut(s)	163
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	3 cut(s)	14, 53, 531
MboI	GATC	3 cut(s)	12, 51, 529
MboII	GAAGA	2 cut(s)	468, 657
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	5 cut(s)	326, 378, 510, 572, 707
MlyI	GAGTC	2 cut(s)	345, 753
MnlI	CCTC	6 cut(s)	87, 140, 404, 480, 685, 698
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	6 cut(s)	25, 335, 569, 610, 658, 737
MvaI	CCWGG	5 cut(s)	25, 569, 610, 658, 737
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	3 cut(s)	12, 51, 529
NlaIII	CATG	2 cut(s)	475, 627
NlaIV	GGNNCC	3 cut(s)	248, 309, 320
NsbI	TGCGCA	1 cut(s)	750
NspI	RCATGY	2 cut(s)	475, 627
PaeR7I	CTCGAG	1 cut(s)	689
PasI	CCCWGGG	1 cut(s)	736
PciI	ACATGT	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	267, 541, 772
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	63, 300, 303, 615
PleI	GAGTC	2 cut(s)	345, 753
PpsI	GAGTC	2 cut(s)	345, 753
PpuMI	RGGWCCY	2 cut(s)	246, 391
PscI	ACATGT	1 cut(s)	623
Psp5II	RGGWCCY	2 cut(s)	246, 391
Psp6I	CCWGG	5 cut(s)	23, 567, 608, 656, 735
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	5 cut(s)	23, 567, 608, 656, 735
PspN4I	GGNNCC	3 cut(s)	248, 309, 320
PspPI	GGNCC	4 cut(s)	246, 307, 391, 603
PspPPI	RGGWCCY	2 cut(s)	246, 391
PspXI	VCTCGAGB	1 cut(s)	689
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	2 cut(s)	80, 448
RsaNI	GTAC	2 cut(s)	79, 447
SatI	GCNGC	4 cut(s)	62, 299, 302, 614
Sau3AI	GATC	3 cut(s)	12, 51, 529
Sau96I	GGNCC	4 cut(s)	246, 307, 391, 603
SchI	GAGTC	2 cut(s)	345, 753
ScrFI	CCNGG	6 cut(s)	25, 335, 569, 610, 658, 737
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	719
Sfr274I	CTCGAG	1 cut(s)	689
SinI	GGWCC	4 cut(s)	246, 307, 391, 603
SlaI	CTCGAG	1 cut(s)	689
SmlI	CTYRAG	3 cut(s)	386, 517, 689
SmoI	CTYRAG	3 cut(s)	386, 517, 689
Sse9I	AATT	5 cut(s)	326, 378, 510, 572, 707
SsiI	CCGC	1 cut(s)	606
SspI	AATATT	1 cut(s)	212
StyD4I	CCNGG	6 cut(s)	23, 333, 567, 608, 656, 735
TaaI	ACNGT	3 cut(s)	34, 220, 723
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	690
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	5 cut(s)	326, 378, 510, 572, 707
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	3 cut(s)	267, 541, 772
TscAI	CASTG	2 cut(s)	39, 186
TseI	GCWGC	4 cut(s)	61, 298, 301, 613
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	39, 186
Van91I	CCANNNNNTGG	1 cut(s)	256
VpaK11BI	GGWCC	4 cut(s)	246, 307, 391, 603
XapI	RAATTY	3 cut(s)	326, 378, 510
XceI	RCATGY	2 cut(s)	475, 627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	45
XhoI	CTCGAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.