Rorug07G0037600

Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi trans-Golgi network (TGN) and or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
2675257 .. 2675526
270 bp
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UTR
Exon/CDS
Intron
Rorug07G0037600.1

Sequence Viewer

Length: 270 bp
ATGGCAGAGCAAATCAAAGTGACCTTATATGGAATGTGGGCTAGCCCCTATGTTAAGATGGTGGAATTGGCCCTCAAATTGAAGAGTATACCCTATGAATATGTGGAAGAAGATTTGCAGAACAAAAGTCCATTGCTTCTCAAGTTCAATCCTGTTCATAAGAAGGTTCCTGTACTTGTTCATAATAGGAAAGCCATTGCTGAGTCTCTTGTGATCATCGAGTATATTGATGAAATCTGGACCTCAGTTTTTAGCAGAAGATCCATATAA
Functional Annotation

Protein Analysis

89

Amino Acids

10.39

Weight (kDa)

8.89

Isoelectric Point (pI)

59.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 6 - 78 8.6e-19 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 9 - 78 4.1e-18 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 78 4e-16 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 88
AclWI GGATC 1 cut(s) 255
AfaI GTAC 1 cut(s) 174
AgsI TTSAA 2 cut(s) 82, 148
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 255
AoxI GGCC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 70, 240
AsuNHI GCTAGC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 240
BccI CCATC 1 cut(s) 52
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 70, 240
BmiI GGNNCC 1 cut(s) 168
BmtI GCTAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 125
Bse3DI GCAATG 2 cut(s) 131, 195
BseMI GCAATG 2 cut(s) 131, 195
BseMII CTCAG 2 cut(s) 192, 258
BshFI GGCC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 213, 260
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 193, 257
BspLI GGNNCC 1 cut(s) 168
BspOI GCTAGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 131, 195
BssMI GATC 2 cut(s) 213, 260
BssNAI GTATAC 1 cut(s) 89
Bst1107I GTATAC 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 201, 244
BstKTI GATC 2 cut(s) 216, 263
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 213, 260
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BstZ17I GTATAC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 70, 240
Csp6I GTAC 1 cut(s) 173
CviJI RGCY 4 cut(s) 41, 45, 71, 194
CviKI_1 RGCY 4 cut(s) 41, 45, 71, 194
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 2 cut(s) 201, 244
DpnI GATC 2 cut(s) 215, 262
DpnII GATC 2 cut(s) 213, 260
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 240
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 1 cut(s) 88
FspBI CTAG 1 cut(s) 42
HaeIII GGCC 1 cut(s) 71
HinfI GANTC 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 118
HpyF3I CTNAG 2 cut(s) 201, 244
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 213, 260
LpnPI CCDG 3 cut(s) 165, 183, 223
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 215, 262
MboI GATC 2 cut(s) 213, 260
MboII GAAGA 4 cut(s) 94, 119, 122, 270
MflI RGATCY 1 cut(s) 260
MluCI AATT 2 cut(s) 65, 77
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 2 cut(s) 83, 253
MseI TTAA 1 cut(s) 54
NdeII GATC 2 cut(s) 213, 260
NheI GCTAGC 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 19
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 70, 240
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 2 cut(s) 213, 260
Sau96I GGNCC 2 cut(s) 70, 240
SchI GAGTC 1 cut(s) 212
SetI ASST 3 cut(s) 26, 168, 245
SgeI CNNG 8 cut(s) 54, 154, 164, 182, 188, 221, 232, 250
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 65, 77
SspMI CTAG 1 cut(s) 42
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 65, 77
TatI WGTACW 1 cut(s) 172
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 111, 146, 170, 246
VpaK11BI GGWCC 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.