Rmu_ssc0000019.1_g000035

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000019.1
OG0006204
Physical Location & Seq
Reverse (-)
179531 .. 188419
8889 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1455 bp
atggtacagagtggtttggacacagataaggttgagaattcaggagccaaagtctctcagagtggaagccaagcatcaggtcttcacagggatccctcattctctcgctggtttgatgaagatgggagagtgcaaggtgatttggtaaatgcggatgcgacggtagaagaagaccctgaatttgaattgcctctgccccaacagggagagctagaaaacaagggtttagatatggacagggaccgtatatctccaaggggaagtaagcgcttgaacggtggtgatacctttggtagtgctacagtccagctagatggaaatgatcaagcaaagcttttgccttttgacgttgagaaggggtctgaaagggagctacaggacatagatcactctacttctgttgatgaccacaaggcattatcctctaattcaaagtatcccatttctgctgcaattatactgaaaacattgttctttgtacttgtatggtacacttgcagcctatttttgaccttgtataacaaaagtctgttaggagataatttgggaaagtttcccgctcccttattgatgaatactgttcactttacaatgcaagctattttatcaaaggcaatcacgtggtactggtctcataggttcaaaaccagcgtcactatgtcttggagagattattttgctaaagttgtaccaacggctcttggaacagcaatggatgttaatctaagcaatgcatcccttgtttttatatcggtcacatttgccacaatgtgtaaatccgccgctccaatatttctccttctatttgctttcgctttcaggttggaatctccgagctataaactttcgggaatcatattggttatatccattggaatacttctaacagttgcaaaggagacagaatttgatttctggggattcatttttgtcatgcttgctgctgttatgtctggtttccgatggtgtttgaaaaatccacttactttgatgagctatgtgactccggttatggcagtggtgactgccctgctctcttttatttttgatccctgggatgaacttagaagaaacaattacttcaataatcctgagcatatcagtcgaagttgcttgctgatgctttttggtggaacccttgcctttttcatggtattaacagaattcattcttgtctcagtgaccagtgctgtcactgtcacaatcgcaggtgttgtcaaggaggctctcactatattggttgcagtcatttacttccatgatgaatttactatgttaaaaggagttggactcttcacaattattcttggtgtgagtttattcaactggtacaagtacgaaaaactaaagaagggtcacacaagtgaagacgacatggaggaatcagtcgtgataaataatgctgcaaaatatgttattcttgaagagacagatgagcaagatgatggcacataa

Protein Analysis

484

Amino Acids

53.97

Weight (kDa)

4.95

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 155 - 442 2.9e-24 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1199
Acc36I ACCTGC 1 cut(s) 1199
AccBSI CCGCTC 2 cut(s) 560, 785
AciI CCGC 4 cut(s) 152, 558, 780, 783
AclWI GGATC 3 cut(s) 86, 99, 1043
AcsI RAATTY 5 cut(s) 37, 179, 905, 1163, 1265
AcvI CACGTG 1 cut(s) 621
AdeI CACNNNGTG 1 cut(s) 771
AfaI GTAC 7 cut(s) 6, 480, 491, 626, 690, 1331, 1337
AfeI AGCGCT 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 8 cut(s) 185, 274, 432, 643, 973, 1084, 1324, 1424
AjnI CCWGG 1 cut(s) 1052
AleI CACNNNNGTG 1 cut(s) 1362
AluBI AGCT 7 cut(s) 211, 310, 334, 373, 599, 837, 996
AluI AGCT 7 cut(s) 211, 310, 334, 373, 599, 837, 996
Alw26I GTCTC 5 cut(s) 58, 636, 893, 1180, 1421
AlwI GGATC 3 cut(s) 86, 99, 1043
Aor51HI AGCGCT 1 cut(s) 269
ApeKI GCWGC 4 cut(s) 449, 498, 941, 1403
ApoI RAATTY 5 cut(s) 37, 179, 905, 1163, 1265
ArsI GACNNNNNNTTYG 4 cut(s) 164, 196, 636, 668
Asp700I GAANNNNTTC 1 cut(s) 1167
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 3 cut(s) 149, 293, 1033
AvaII GGWCC 1 cut(s) 241
BamHI GGATCC 1 cut(s) 91
BbrPI CACGTG 1 cut(s) 621
BbsI GAAGAC 3 cut(s) 74, 177, 1374
BbvI GCAGC 4 cut(s) 436, 510, 928, 1390
BccI CCATC 4 cut(s) 116, 308, 957, 1439
BceAI ACGGC 1 cut(s) 711
BcgI CGANNNNNNTGC 2 cut(s) 1085, 1119
BciT130I CCWGG 1 cut(s) 1054
BciVI GTATCC 1 cut(s) 447
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 5 cut(s) 58, 636, 893, 1180, 1421
BfaI CTAG 2 cut(s) 212, 311
BfmI CTRYAG 2 cut(s) 300, 374
BfoI RGCGCY 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 1199
BfuI GTATCC 1 cut(s) 447
BisI GCNGC 5 cut(s) 450, 499, 783, 942, 1404
BlsI GCNGC 5 cut(s) 451, 500, 784, 943, 1405
Bme1390I CCNGG 1 cut(s) 1054
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 4 cut(s) 46, 93, 242, 1135
BmrFI CCNGG 1 cut(s) 1054
BmsI GCATC 4 cut(s) 83, 145, 743, 1110
BpiI GAAGAC 3 cut(s) 74, 177, 1374
BplI GAGNNNNNCTC 2 cut(s) 1275, 1307
Bpu10I CCTNAGC 1 cut(s) 1092
BsaAI YACGTR 1 cut(s) 621
BsaBI GATNNNNATC 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 636
BsaJI CCNNGG 3 cut(s) 254, 1052, 1053
BsaWI WCCGGW 1 cut(s) 1006
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 3 cut(s) 632, 1185, 1331
Bse3DI GCAATG 2 cut(s) 717, 736
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 1 cut(s) 1054
BseDI CCNNGG 3 cut(s) 254, 1052, 1053
BseGI GGATG 4 cut(s) 160, 721, 734, 1063
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 2 cut(s) 717, 736
BseMII CTCAG 3 cut(s) 71, 1083, 1191
BseNI ACTGG 3 cut(s) 632, 1185, 1331
BseXI GCAGC 4 cut(s) 436, 510, 928, 1390
BsiSI CCGG 1 cut(s) 1007
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 5 cut(s) 58, 636, 893, 1180, 1421
BsmFI GGGAC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 636
Bsp143I GATC 4 cut(s) 91, 322, 385, 1048
BspACI CCGC 4 cut(s) 152, 558, 780, 783
BspCNI CTCAG 3 cut(s) 70, 1084, 1190
BspLI GGNNCC 4 cut(s) 46, 93, 242, 1135
BspMI ACCTGC 1 cut(s) 1199
BspPI GGATC 3 cut(s) 86, 99, 1043
BspTNI GGTCTC 1 cut(s) 636
BsrBI CCGCTC 2 cut(s) 560, 785
BsrDI GCAATG 2 cut(s) 717, 736
BsrI ACTGG 3 cut(s) 632, 1185, 1331
BssECI CCNNGG 3 cut(s) 254, 1052, 1053
BssMI GATC 4 cut(s) 91, 322, 385, 1048
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 1054
Bst4CI ACNGT 7 cut(s) 163, 245, 278, 304, 580, 889, 1198
Bst6I CTCTTC 2 cut(s) 1298, 1419
BstBAI YACGTR 1 cut(s) 621
BstC8I GCNNGC 3 cut(s) 597, 939, 1115
BstDEI CTNAG 5 cut(s) 57, 725, 1064, 1092, 1177
BstF5I GGATG 4 cut(s) 160, 721, 734, 1063
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 4 cut(s) 94, 325, 388, 1051
BstMAI GTCTC 5 cut(s) 58, 636, 893, 1180, 1421
BstMBI GATC 4 cut(s) 91, 322, 385, 1048
BstNI CCWGG 1 cut(s) 1054
BstSCI CCNGG 1 cut(s) 1052
BstSFI CTRYAG 2 cut(s) 300, 374
BstV1I GCAGC 4 cut(s) 436, 510, 928, 1390
BstV2I GAAGAC 3 cut(s) 74, 177, 1374
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 1 cut(s) 91
BsuI GTATCC 1 cut(s) 447
BtsCI GGATG 4 cut(s) 160, 721, 734, 1063
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 4 cut(s) 1023, 1185, 1192, 1194
BveI ACCTGC 1 cut(s) 1199
Cac8I GCNNGC 3 cut(s) 597, 939, 1115
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 1 cut(s) 640
Csp6I GTAC 7 cut(s) 5, 479, 490, 625, 689, 1330, 1336
CspCI CAANNNNNGTGG 2 cut(s) 969, 1004
CviAII CATG 4 cut(s) 934, 1150, 1259, 1375
CviQI GTAC 7 cut(s) 5, 479, 490, 625, 689, 1330, 1336
DdeI CTNAG 5 cut(s) 57, 725, 1064, 1092, 1177
DpnI GATC 4 cut(s) 93, 324, 387, 1050
DpnII GATC 4 cut(s) 91, 322, 385, 1048
DraIII CACNNNGTG 1 cut(s) 771
Eam1104I CTCTTC 2 cut(s) 1298, 1419
EarI CTCTTC 2 cut(s) 1298, 1419
EciI GGCGGA 1 cut(s) 769
Eco130I CCWWGG 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 241
Eco47III AGCGCT 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 621
EcoRI GAATTC 2 cut(s) 37, 1163
EcoRII CCWGG 1 cut(s) 1052
EcoT14I CCWWGG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 4 cut(s) 937, 1153, 1262, 1378
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 1 cut(s) 254
FatI CATG 4 cut(s) 933, 1149, 1258, 1374
FauI CCCGC 1 cut(s) 565
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 5 cut(s) 450, 499, 783, 942, 1404
FokI GGATG 4 cut(s) 167, 721, 728, 1070
Fsp4HI GCNGC 5 cut(s) 450, 499, 783, 942, 1404
FspBI CTAG 2 cut(s) 212, 311
GlaI GCGC 1 cut(s) 269
GluI GCNGC 5 cut(s) 450, 499, 783, 942, 1404
HaeII RGCGCY 1 cut(s) 271
HapII CCGG 1 cut(s) 1007
HgaI GACGC 1 cut(s) 640
HhaI GCGC 1 cut(s) 270
Hin1II CATG 4 cut(s) 937, 1153, 1262, 1378
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 6 cut(s) 827, 852, 921, 1003, 1290, 1382
HpaII CCGG 1 cut(s) 1007
HphI GGTGA 3 cut(s) 149, 293, 1033
Hpy166II GTNNAC 2 cut(s) 492, 583
Hpy188I TCNGA 4 cut(s) 60, 364, 834, 962
Hpy188III TCNNGA 5 cut(s) 42, 849, 1091, 1390, 1421
Hpy8I GTNNAC 2 cut(s) 492, 583
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 3 cut(s) 349, 809, 1345
HpyCH4III ACNGT 7 cut(s) 163, 245, 278, 304, 580, 889, 1198
HpyCH4IV ACGT 2 cut(s) 348, 620
HpyCH4V TGCA 8 cut(s) 133, 452, 498, 595, 734, 893, 1244, 1406
HpyF3I CTNAG 5 cut(s) 57, 725, 1064, 1092, 1177
HpySE526I ACGT 2 cut(s) 348, 620
Hsp92II CATG 4 cut(s) 937, 1153, 1262, 1378
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 91, 322, 385, 1048
LmnI GCTCC 4 cut(s) 44, 370, 565, 790
Lsp1109I GCAGC 4 cut(s) 436, 510, 928, 1390
LweI GCATC 4 cut(s) 83, 145, 743, 1110
MaeI CTAG 2 cut(s) 212, 311
MaeII ACGT 2 cut(s) 348, 620
MaeIII GTNAC 8 cut(s) 652, 754, 1000, 1021, 1180, 1192, 1198, 1355
MalI GATC 4 cut(s) 93, 324, 387, 1050
MbiI CCGCTC 2 cut(s) 560, 785
MboI GATC 4 cut(s) 91, 322, 385, 1048
MboII GAAGA 8 cut(s) 74, 131, 179, 182, 1080, 1285, 1379, 1436
MflI RGATCY 1 cut(s) 91
MlyI GAGTC 2 cut(s) 997, 1284
MmeI TCCRAC 2 cut(s) 804, 1267
MnlI CCTC 5 cut(s) 106, 201, 433, 1216, 1372
Mph1103I ATGCAT 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 1167
MseI TTAA 3 cut(s) 720, 1157, 1277
MslI CAYNNNNRTG 1 cut(s) 1362
MspI CCGG 1 cut(s) 1007
MspR9I CCNGG 1 cut(s) 1054
MvaI CCWGG 1 cut(s) 1054
NdeII GATC 4 cut(s) 91, 322, 385, 1048
NlaIII CATG 4 cut(s) 937, 1153, 1262, 1378
NlaIV GGNNCC 4 cut(s) 46, 93, 242, 1135
NmuCI GTSAC 8 cut(s) 652, 754, 1000, 1021, 1180, 1192, 1198, 1355
NsiI ATGCAT 1 cut(s) 736
OliI CACNNNNGTG 1 cut(s) 1362
PaqCI CACCTGC 1 cut(s) 1199
PasI CCCWGGG 1 cut(s) 1053
PdmI GAANNNNTTC 1 cut(s) 1167
PfeI GAWTC 4 cut(s) 827, 852, 921, 1382
PkrI GCNGC 5 cut(s) 451, 500, 784, 943, 1405
PleI GAGTC 2 cut(s) 997, 1284
PmaCI CACGTG 1 cut(s) 621
PmlI CACGTG 1 cut(s) 621
PpsI GAGTC 2 cut(s) 997, 1284
Ppu21I YACGTR 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 1052
PspCI CACGTG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 1052
PspN4I GGNNCC 4 cut(s) 46, 93, 242, 1135
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 7 cut(s) 6, 480, 491, 626, 690, 1331, 1337
RsaNI GTAC 7 cut(s) 5, 479, 490, 625, 689, 1330, 1336
RseI CAYNNNNRTG 1 cut(s) 1362
SaqAI TTAA 3 cut(s) 720, 1157, 1277
SatI GCNGC 5 cut(s) 450, 499, 783, 942, 1404
Sau3AI GATC 4 cut(s) 91, 322, 385, 1048
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 2 cut(s) 997, 1284
ScrFI CCNGG 1 cut(s) 1054
SfaNI GCATC 4 cut(s) 83, 145, 743, 1110
SfcI CTRYAG 2 cut(s) 300, 374
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 1362
SsiI CCGC 4 cut(s) 152, 558, 780, 783
SspI AATATT 1 cut(s) 792
SspMI CTAG 2 cut(s) 212, 311
StyD4I CCNGG 1 cut(s) 1052
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 7 cut(s) 163, 245, 278, 304, 580, 889, 1198
TaiI ACGT 2 cut(s) 351, 623
TaqI TCGA 1 cut(s) 1105
TaqII GACCGA 1 cut(s) 742
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 4 cut(s) 827, 852, 921, 1382
Tru1I TTAA 3 cut(s) 720, 1157, 1277
Tru9I TTAA 3 cut(s) 720, 1157, 1277
TscAI CASTG 4 cut(s) 1023, 1185, 1192, 1201
TseFI GTSAC 8 cut(s) 652, 754, 1000, 1021, 1180, 1192, 1198, 1355
TseI GCWGC 4 cut(s) 449, 498, 941, 1403
Tsp45I GTSAC 8 cut(s) 652, 754, 1000, 1021, 1180, 1192, 1198, 1355
TspDTI ATGAA 7 cut(s) 132, 587, 913, 1074, 1138, 1156, 1278
TspRI CASTG 4 cut(s) 1023, 1185, 1192, 1201
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 5 cut(s) 37, 179, 905, 1163, 1265
XmnI GAANNNNTTC 1 cut(s) 1167
XspI CTAG 2 cut(s) 212, 311
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.