Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000022.1

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

240029 .. 243084

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgcagcagcagcagcagcagccacagcaaatgatgaccgggatgccttcatttccacccactaacatcaccaccgagcaaattcagaagtgccttgatgagaacaaaaagttgattctagcaatattggacaatcaaaaccttggaaaacttgctgagtgtgcccagtaccaaactcagcttcaaaagaatcttatgtatttagcagcaattgctgatgctcaaccacaaccacaaccacaagcaccaacaatgccagcccagcagatggccccgcatcctgcgatgcaacaagcgggatattacatgcagcatcctcaggctgcagcggcaatggctcagcaacagggtcttttccctcaaaagatgcaaatgcagttcaatagcccacatcaaatgcacgaatcacaccagcagttacaccaacaagccatgcaaggccagatgggaatgagacctggaggggccaatggcatgccttcaatgcatcatactgagagcacccatggaggaagcaagcaagacaactcagaggctgggacaggtggcgatggccaggggagctcggctggtgggcacggcaatggtgacggagaagataagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

201

Amino Acids

21.84

Weight (kDa)

6.01

Isoelectric Point (pI)

70.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	22 - 80	1.2e-22	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	268
AciI	CCGC	3 cut(s)	275, 296, 329
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	185, 382, 483
AjnI	CCWGG	2 cut(s)	457, 555
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	2 cut(s)	181, 564
AluI	AGCT	2 cut(s)	181, 564
Alw21I	GWGCWC	2 cut(s)	503, 566
Alw26I	GTCTC	1 cut(s)	448
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	4 cut(s)	270, 439, 465, 553
ApoI	RAATTY	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	271, 465
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	61, 599
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	2 cut(s)	166, 579
BalI	TGGCCA	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	503, 566
BccI	CCATC	3 cut(s)	262, 439, 545
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	2 cut(s)	459, 557
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	324
BlpI	GCTNAGC	1 cut(s)	339
Bme1390I	CCNGG	3 cut(s)	40, 459, 557
BmgT120I	GGNCC	2 cut(s)	271, 465
BmiI	GGNNCC	2 cut(s)	273, 466
BmrFI	CCNGG	3 cut(s)	40, 459, 557
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	7 cut(s)	33, 208, 276, 286, 322, 357, 496
BmuI	ACTGGG	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	480
Bpu1102I	GCTNAGC	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	142, 505, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	2 cut(s)	339, 589
BseBI	CCWGG	2 cut(s)	459, 557
BseDI	CCNNGG	3 cut(s)	142, 505, 556
BseGI	GGATG	3 cut(s)	48, 277, 313
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	2 cut(s)	339, 589
BseMII	CTCAG	6 cut(s)	147, 191, 332, 353, 486, 543
BseNI	ACTGG	1 cut(s)	166
BseSI	GKGCMC	2 cut(s)	166, 579
BseYI	CCCAGC	2 cut(s)	261, 536
BshFI	GGCC	4 cut(s)	272, 441, 467, 555
BsiHKAI	GWGCWC	2 cut(s)	503, 566
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	4 cut(s)	272, 441, 467, 555
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	4 cut(s)	166, 503, 566, 579
Bsp1720I	GCTNAGC	1 cut(s)	339
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	3 cut(s)	275, 296, 329
BspANI	GGCC	4 cut(s)	272, 441, 467, 555
BspCNI	CTCAG	6 cut(s)	148, 190, 331, 352, 487, 542
BspLI	GGNNCC	2 cut(s)	273, 466
BspMAI	CTGCAG	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	2 cut(s)	339, 589
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	142, 505, 556
BssT1I	CCWWGG	2 cut(s)	142, 505
Bst2UI	CCWGG	2 cut(s)	459, 557
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	3 cut(s)	258, 476, 518
BstDEI	CTNAG	6 cut(s)	156, 177, 318, 339, 495, 529
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	3 cut(s)	48, 277, 313
BstMAI	GTCTC	1 cut(s)	448
BstNI	CCWGG	2 cut(s)	459, 557
BstNSI	RCATGY	2 cut(s)	310, 478
BstSCI	CCNGG	3 cut(s)	38, 457, 555
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	2 cut(s)	166, 579
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	4 cut(s)	272, 441, 467, 555
BtgI	CCRYGG	1 cut(s)	505
BtgZI	GCGATG	2 cut(s)	299, 564
BtsCI	GGATG	3 cut(s)	48, 277, 313
Cac8I	GCNNGC	3 cut(s)	258, 476, 518
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	2 cut(s)	271, 465
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	4 cut(s)	307, 433, 475, 506
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	6 cut(s)	156, 177, 318, 339, 495, 529
EaeI	YGGCCR	1 cut(s)	553
Ecl136II	GAGCTC	1 cut(s)	564
Eco130I	CCWWGG	2 cut(s)	142, 505
Eco24I	GRGCYC	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	448
Eco53kI	GAGCTC	1 cut(s)	564
Eco81I	CCTNAGG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	564
EcoRII	CCWGG	2 cut(s)	457, 555
EcoT14I	CCWWGG	2 cut(s)	142, 505
EcoT22I	ATGCAT	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	566
ErhI	CCWWGG	2 cut(s)	142, 505
FaeI	CATG	4 cut(s)	310, 436, 478, 509
FaiI	YATR	6 cut(s)	197, 308, 434, 476, 492, 507
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	4 cut(s)	306, 432, 474, 505
FauI	CCCGC	2 cut(s)	282, 289
FokI	GGATG	3 cut(s)	55, 264, 300
FriOI	GRGCYC	1 cut(s)	566
FspBI	CTAG	1 cut(s)	119
GsaI	CCCAGC	2 cut(s)	265, 540
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	4 cut(s)	272, 441, 467, 555
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	4 cut(s)	310, 436, 478, 509
HinfI	GANTC	3 cut(s)	115, 190, 404
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	61, 599
Hpy188I	TCNGA	2 cut(s)	87, 532
HpyAV	CCTTC	2 cut(s)	57, 489
HpyCH4V	TGCA	9 cut(s)	4, 289, 310, 326, 370, 376, 400, 436, 487
HpyF3I	CTNAG	6 cut(s)	156, 177, 318, 339, 495, 529
Hsp92II	CATG	4 cut(s)	310, 436, 478, 509
LmnI	GCTCC	1 cut(s)	561
LweI	GCATC	7 cut(s)	33, 208, 276, 286, 322, 357, 496
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	417, 587
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	4 cut(s)	166, 503, 566, 579
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	2 cut(s)	81, 210
MluNI	TGGCCA	1 cut(s)	555
MnlI	CCTC	5 cut(s)	327, 369, 455, 503, 526
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	3 cut(s)	40, 459, 557
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	459, 557
NciI	CCSGG	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	505
NlaIII	CATG	4 cut(s)	310, 436, 478, 509
NlaIV	GGNNCC	2 cut(s)	273, 466
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	587
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	2 cut(s)	310, 478
PaeI	GCATGC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	115, 190, 404
PflMI	CCANNNNNTGG	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	566
Psp6I	CCWGG	2 cut(s)	457, 555
PspFI	CCCAGC	2 cut(s)	261, 536
PspGI	CCWGG	2 cut(s)	457, 555
PspN4I	GGNNCC	2 cut(s)	273, 466
PspPI	GGNCC	2 cut(s)	271, 465
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	566
Sau96I	GGNCC	2 cut(s)	271, 465
ScrFI	CCNGG	3 cut(s)	40, 459, 557
SduI	GDGCHC	4 cut(s)	166, 503, 566, 579
SetI	ASST	5 cut(s)	144, 183, 460, 547, 566
SfaNI	GCATC	7 cut(s)	33, 208, 276, 286, 322, 357, 496
SfcI	CTRYAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	582
SphI	GCATGC	1 cut(s)	478
Sse9I	AATT	2 cut(s)	81, 210
SsiI	CCGC	3 cut(s)	275, 296, 329
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	566
StyD4I	CCNGG	3 cut(s)	38, 457, 555
StyI	CCWWGG	2 cut(s)	142, 505
TasI	AATT	2 cut(s)	81, 210
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	3 cut(s)	115, 190, 404
TseFI	GTSAC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	1 cut(s)	606
Van91I	CCANNNNNTGG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	2 cut(s)	310, 478
XspI	CTAG	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.