Rmu_ssc0000041.1_g000026

WPP domain-interacting tail-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000041.1
OG0002372
Physical Location & Seq
Reverse (-)
113900 .. 114496
597 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 597 bp
atggattatgatgctactcatgaagcaagtgattttggcaacgatgttaatattgacgtcccagtagtagaatcaattagagttgatagtcttgaaaaggtttcatttgatggcatggttatagaagaattacaaaatctgggcgaggttataactggagttgagttggatctagcatgtgcttctgagaagttgcttaatttaattggttttatgatgcatgtggcaaccaaggagagtgactttgatgcctttatatccaatgaagagcagacaatagttggttctgtcgagaaggctctagagttcactctcttgtctggaatattagactctgaggtaggtgaattggataaggtcatagctttacttcaaatggaaattacggctgcgcaagagctattatctttatatacatacttaggagaaacatttacagtaatagaagaaaagctgcaggattctgagcagtctttgaagcagttgcaagaacaaatctctgaaatcaggatgcaatctctgaagttccagaggaccctttcatgctacgacggagaagaaaattgtaagctaccagtctcattcaaaatgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.15

Weight (kDa)

4.1

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIT1_2_N PF26581 45 - 183 2.2e-54 WIT1/2, N-terminal helical bundle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AatII GACGTC 1 cut(s) 60
Acc16I TGCGCA 1 cut(s) 393
AclWI GGATC 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 57
AgsI TTSAA 4 cut(s) 95, 374, 478, 586
AluBI AGCT 4 cut(s) 365, 400, 454, 571
AluI AGCT 4 cut(s) 365, 400, 454, 571
Alw26I GTCTC 1 cut(s) 583
AlwI GGATC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 389, 454
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 534
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 376, 441
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 583
BfaI CTAG 2 cut(s) 173, 302
BfmI CTRYAG 1 cut(s) 455
BisI GCNGC 2 cut(s) 390, 455
BlsI GCNGC 2 cut(s) 391, 456
Bme18I GGWCC 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 1 cut(s) 536
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 207, 238, 501
BmuI ACTGGG 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 231
Bse1I ACTGG 3 cut(s) 62, 160, 575
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 516
BseMII CTCAG 3 cut(s) 177, 327, 456
BseNI ACTGG 3 cut(s) 62, 160, 575
BseXI GCAGC 2 cut(s) 376, 441
BslFI GGGAC 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 169
BspCNI CTCAG 3 cut(s) 178, 328, 457
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 536
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 261
BsrI ACTGG 3 cut(s) 62, 160, 575
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 261
BstACI GRCGYC 1 cut(s) 57
BstDEI CTNAG 4 cut(s) 186, 336, 421, 465
BstF5I GGATG 1 cut(s) 516
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 1 cut(s) 169
BstNSI RCATGY 2 cut(s) 180, 224
BstSFI CTRYAG 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 376, 441
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtsCI GGATG 1 cut(s) 516
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 534
CviAII CATG 5 cut(s) 20, 115, 177, 221, 543
CviJI RGCY 6 cut(s) 299, 365, 389, 400, 454, 571
CviKI_1 RGCY 6 cut(s) 299, 365, 389, 400, 454, 571
DdeI CTNAG 4 cut(s) 186, 336, 421, 465
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 5 cut(s) 23, 118, 180, 224, 546
FaqI GGGAC 1 cut(s) 44
FatI CATG 5 cut(s) 19, 114, 176, 220, 542
Fnu4HI GCNGC 2 cut(s) 390, 455
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 2 cut(s) 390, 455
FspBI CTAG 2 cut(s) 173, 302
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 1 cut(s) 393
GluI GCNGC 2 cut(s) 390, 455
GsuI CTGGAG 1 cut(s) 177
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 5 cut(s) 23, 118, 180, 224, 546
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HinfI GANTC 3 cut(s) 71, 332, 461
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 5 cut(s) 187, 337, 466, 502, 522
Hpy188III TCNNGA 7 cut(s) 20, 92, 292, 302, 321, 508, 529
Hpy8I GTNNAC 1 cut(s) 309
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 220, 457, 487, 514
HpyF3I CTNAG 4 cut(s) 186, 336, 421, 465
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 5 cut(s) 23, 118, 180, 224, 546
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 261
LpnPI CCDG 8 cut(s) 75, 125, 141, 306, 443, 493, 542, 588
Lsp1109I GCAGC 2 cut(s) 376, 441
LweI GCATC 3 cut(s) 207, 238, 501
MaeI CTAG 2 cut(s) 173, 302
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 4 cut(s) 137, 278, 458, 569
MflI RGATCY 1 cut(s) 169
MluCI AATT 7 cut(s) 75, 128, 199, 204, 347, 381, 562
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 139, 331, 525
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 3 cut(s) 48, 198, 203
NdeII GATC 1 cut(s) 169
NlaIII CATG 5 cut(s) 23, 118, 180, 224, 546
NlaIV GGNNCC 1 cut(s) 536
NmuCI GTSAC 1 cut(s) 239
NsbI TGCGCA 1 cut(s) 393
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 2 cut(s) 180, 224
PagI TCATGA 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 71, 461
PkrI GCNGC 2 cut(s) 391, 456
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 534
PsiI TTATAA 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 534
PspN4I GGNNCC 1 cut(s) 536
PspPI GGNCC 1 cut(s) 534
PspPPI RGGWCCY 1 cut(s) 534
PstI CTGCAG 1 cut(s) 459
PsuI RGATCY 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 48, 198, 203
SatI GCNGC 2 cut(s) 390, 455
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 534
SchI GAGTC 1 cut(s) 326
SfaNI GCATC 3 cut(s) 207, 238, 501
SfcI CTRYAG 1 cut(s) 455
SinI GGWCC 1 cut(s) 534
Sse9I AATT 7 cut(s) 75, 128, 199, 204, 347, 381, 562
SspI AATATT 2 cut(s) 52, 327
SspMI CTAG 2 cut(s) 173, 302
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 291
TasI AATT 7 cut(s) 75, 128, 199, 204, 347, 381, 562
TfiI GAWTC 2 cut(s) 71, 461
Tru1I TTAA 3 cut(s) 48, 198, 203
Tru9I TTAA 3 cut(s) 48, 198, 203
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 389, 454
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 4 cut(s) 36, 93, 279, 531
TspGWI ACGGA 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 301
XceI RCATGY 2 cut(s) 180, 224
XspI CTAG 2 cut(s) 173, 302
ZraI GACGTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.