Rmu_ssc0000112.1_g000001

Ethanolamine-phosphate cytidylyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000112.1
OG0003202
Physical Location & Seq
Forward (+)
120 .. 3114
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
atgtcttcacatggagacccttgtgaagaaagtcaatccaagagcgcccaattatctcaatttctgccaacatcccgacgaattgtgcaattctccaatggaaaggctcctggaccaaatgctcgtattgtgtacattgatggggcatttgatctcttccatgctggacatgttgagcttggagactttttactagttggcatccacaacgatcacactgtgagtgaacacagaggcaagcatccaataatgcatttacatgaacgtagtcttggtgtgttgggttgccgctatgttgatgaggtcatcattggtgctccgtgggaaattaccatggatatgataacaactttcaacatttcattggtagtgcgtgggacagtttctgagtacaactcctcgtttactggtgaaagtgatccttattctgttcccaagagcatggggattttccaagtacttgaaagcccaaaagatataactacaacatcagtatctcagaggataattgcaaatcatgatgcttacttgaaacgcaacgccaggaaaacagcaagtgaaaaaaaatactacgaacagaagaaatatgtttcaggggactag

Protein Analysis

200

Amino Acids

22.3

Weight (kDa)

6.55

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_like PF01467 45 - 127 8.3e-10 Cytidylyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 289
AclWI GGATC 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 3 cut(s) 134, 392, 459
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 3 cut(s) 355, 464, 532
AhlI ACTAGT 1 cut(s) 193
AjnI CCWGG 2 cut(s) 109, 542
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 2 cut(s) 9, 177
AlwI GGATC 1 cut(s) 413
AlwNI CAGNNNCTG 1 cut(s) 386
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
Bbv12I GWGCWC 1 cut(s) 319
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 2 cut(s) 111, 544
BcoDI GTCTC 2 cut(s) 9, 177
BcuI ACTAGT 1 cut(s) 193
BfaI CTAG 2 cut(s) 194, 601
BfoI RGCGCY 1 cut(s) 48
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmcAI AGTACT 1 cut(s) 459
Bme1390I CCNGG 2 cut(s) 111, 544
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 2 cut(s) 111, 544
BmsI GCATC 3 cut(s) 210, 250, 511
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BsaI GGTCTC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 320, 333
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 2 cut(s) 111, 544
BseDI CCNNGG 2 cut(s) 320, 333
BseGI GGATG 3 cut(s) 71, 201, 241
BseMII CTCAG 2 cut(s) 378, 512
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 319
BslFI GGGAC 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 9, 177
BsmFI GGGAC 1 cut(s) 391
Bso31I GGTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 3 cut(s) 151, 211, 418
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 379, 511
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 9
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 320, 333
BssMI GATC 3 cut(s) 151, 211, 418
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 111, 544
Bst4CI ACNGT 2 cut(s) 220, 382
Bst6I CTCTTC 1 cut(s) 161
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 387, 498
BstDSI CCRYGG 2 cut(s) 320, 333
BstF5I GGATG 3 cut(s) 71, 201, 241
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 3 cut(s) 154, 214, 421
BstMAI GTCTC 2 cut(s) 9, 177
BstMBI GATC 3 cut(s) 151, 211, 418
BstNI CCWGG 2 cut(s) 111, 544
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 109, 542
BstXI CCANNNNNNTGG 1 cut(s) 442
BtgI CCRYGG 2 cut(s) 320, 333
BtsCI GGATG 3 cut(s) 71, 201, 241
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 239
CaiI CAGNNNCTG 1 cut(s) 386
CciI TCATGA 1 cut(s) 517
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 133, 391, 458
CviAII CATG 7 cut(s) 11, 161, 170, 260, 334, 442, 518
CviJI RGCY 3 cut(s) 107, 178, 468
CviKI_1 RGCY 3 cut(s) 107, 178, 468
CviQI GTAC 3 cut(s) 133, 391, 458
DdeI CTNAG 2 cut(s) 387, 498
DpnI GATC 3 cut(s) 153, 213, 420
DpnII GATC 3 cut(s) 151, 211, 418
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 109, 542
EcoT14I CCWWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 7 cut(s) 14, 164, 173, 263, 337, 445, 521
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 1 cut(s) 391
FatI CATG 7 cut(s) 10, 160, 169, 259, 333, 441, 517
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 3 cut(s) 58, 188, 228
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 2 cut(s) 194, 601
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 289
HaeII RGCGCY 1 cut(s) 48
HhaI GCGC 1 cut(s) 47
Hin1II CATG 7 cut(s) 14, 164, 173, 263, 337, 445, 521
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 3 cut(s) 133, 227, 405
Hpy188I TCNGA 2 cut(s) 388, 501
Hpy188III TCNNGA 2 cut(s) 75, 518
Hpy8I GTNNAC 3 cut(s) 133, 227, 405
Hpy99I CGWCG 1 cut(s) 81
HpyCH4III ACNGT 2 cut(s) 220, 382
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 88, 253, 512
HpyF3I CTNAG 2 cut(s) 387, 498
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 7 cut(s) 14, 164, 173, 263, 337, 445, 521
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 3 cut(s) 151, 211, 418
LmnI GCTCC 2 cut(s) 112, 322
LpnPI CCDG 7 cut(s) 96, 123, 150, 393, 529, 556, 579
LweI GCATC 3 cut(s) 210, 250, 511
MaeI CTAG 2 cut(s) 194, 601
MaeII ACGT 1 cut(s) 265
MalI GATC 3 cut(s) 153, 213, 420
MboI GATC 3 cut(s) 151, 211, 418
MboII GAAGA 3 cut(s) 38, 148, 592
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 6 cut(s) 50, 59, 81, 89, 327, 507
MnlI CCTC 4 cut(s) 227, 295, 409, 495
Mph1103I ATGCAT 1 cut(s) 255
MslI CAYNNNNRTG 2 cut(s) 258, 338
MspR9I CCNGG 2 cut(s) 111, 544
MvaI CCWGG 2 cut(s) 111, 544
NcoI CCATGG 1 cut(s) 333
NdeII GATC 3 cut(s) 151, 211, 418
NlaIII CATG 7 cut(s) 14, 164, 173, 263, 337, 445, 521
NlaIV GGNNCC 1 cut(s) 108
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 1 cut(s) 173
PagI TCATGA 1 cut(s) 517
PciI ACATGT 1 cut(s) 169
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 290
PscI ACATGT 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 109, 542
PspGI CCWGG 2 cut(s) 109, 542
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 386
RsaI GTAC 3 cut(s) 134, 392, 459
RsaNI GTAC 3 cut(s) 133, 391, 458
RseI CAYNNNNRTG 2 cut(s) 258, 338
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 3 cut(s) 151, 211, 418
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 459
ScrFI CCNGG 2 cut(s) 111, 544
SduI GDGCHC 1 cut(s) 319
SetI ASST 3 cut(s) 180, 268, 306
SfaNI GCATC 3 cut(s) 210, 250, 511
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 258, 338
SpeI ACTAGT 1 cut(s) 193
Sse9I AATT 6 cut(s) 50, 59, 81, 89, 327, 507
SsiI CCGC 1 cut(s) 289
SspMI CTAG 2 cut(s) 194, 601
StyD4I CCNGG 2 cut(s) 109, 542
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 220, 382
TaiI ACGT 1 cut(s) 268
TasI AATT 6 cut(s) 50, 59, 81, 89, 327, 507
TatI WGTACW 3 cut(s) 132, 390, 457
TauI GCSGC 1 cut(s) 291
TscAI CASTG 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 276, 351
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 113
XceI RCATGY 1 cut(s) 173
XspI CTAG 2 cut(s) 194, 601
ZrmI AGTACT 1 cut(s) 459
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.