Rmu_ssc0000126.1_g000040

Ferric-chelate reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000126.1
OG0005090
Physical Location & Seq
Forward (+)
167942 .. 168781
840 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
atgaaagaaaactctcaattcatagttttcatcaccatcgccatcaccatttttggcttaacagccatagtgaattcccaaacagattcctgcagctcaagtctaaacctccggagtgtcaatctgccctttgatgcagcttccctcaactgcgatgctgtgtgggattctcagggttacatcctcagatactcacagaccacaccaggaacatggacctttgttctctcagcacctgcagcaaattcctacatagcaatggggttctcaagcaatggccagatgacggggtccagtgcgattgtggggtgggtgtcctcaacagagggaggactaattaagcggtactacctaggtgggacttcatcaaaccttgtggaggtcgacaaagggaaccttgttcttaccaacttctccttcatcacaaatcagtcttccacggtatacatggggttccagttggtggctgaccaaccacaaagtaggctcatatactcagttggcccaactgggttgcttcctgtagcacctaactacaggttgaccgagcactttgacaaggtctccaccaccataaattacattacaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

197

Amino Acids

21.26

Weight (kDa)

5.17

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOMON PF03351 61 - 137 1.1e-07 DOMON domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 463
AccI GTMKAC 2 cut(s) 384, 444
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 73, 244
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 3 cut(s) 286, 379, 463
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 2 cut(s) 96, 140
AluI AGCT 2 cut(s) 96, 140
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 568
AlwNI CAGNNNCTG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 111
AoxI GGCC 2 cut(s) 277, 502
ApeKI GCWGC 3 cut(s) 93, 137, 239
ApoI RAATTY 2 cut(s) 73, 244
AspA2I CCTAGG 1 cut(s) 352
AspS9I GGNCC 3 cut(s) 216, 291, 503
AsuHPI GGTGA 2 cut(s) 25, 37
AvaII GGWCC 2 cut(s) 216, 291
AvrII CCTAGG 1 cut(s) 352
BalI TGGCCA 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 3 cut(s) 105, 149, 251
BccI CCATC 2 cut(s) 44, 50
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 568
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 4 cut(s) 91, 237, 522, 535
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 3 cut(s) 94, 138, 240
BlnI CCTAGG 1 cut(s) 352
BlsI GCNGC 3 cut(s) 95, 139, 241
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 216, 291
BmgT120I GGNCC 3 cut(s) 216, 291, 503
BmiI GGNNCC 3 cut(s) 292, 395, 455
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 519
BmsI GCATC 2 cut(s) 124, 145
BmuI ACTGGG 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 82, 253
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 352, 438
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 379, 463
Bse1I ACTGG 3 cut(s) 294, 457, 514
Bse3DI GCAATG 2 cut(s) 264, 280
BseAI TCCGGA 1 cut(s) 111
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 352, 438
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 286, 379, 463
BseMI GCAATG 2 cut(s) 264, 280
BseMII CTCAG 4 cut(s) 185, 199, 243, 510
BseNI ACTGG 3 cut(s) 294, 457, 514
BseXI GCAGC 3 cut(s) 105, 149, 251
BshFI GGCC 2 cut(s) 279, 504
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 3 cut(s) 286, 379, 463
BsmAI GTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 2 cut(s) 279, 504
Bso31I GGTCTC 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 552
Bsp13I TCCGGA 1 cut(s) 111
BspACI CCGC 1 cut(s) 343
BspANI GGCC 2 cut(s) 279, 504
BspCNI CTCAG 4 cut(s) 184, 198, 242, 509
BspEI TCCGGA 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 292, 395, 455
BspMAI CTGCAG 2 cut(s) 95, 241
BspMI ACCTGC 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 568
BsrDI GCAATG 2 cut(s) 264, 280
BsrI ACTGG 3 cut(s) 294, 457, 514
BssECI CCNNGG 2 cut(s) 352, 438
BssNAI GTATAC 1 cut(s) 445
BssT1I CCWWGG 1 cut(s) 352
Bst1107I GTATAC 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 442
BstDEI CTNAG 4 cut(s) 171, 185, 229, 496
BstDSI CCRYGG 1 cut(s) 438
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 568
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 4 cut(s) 91, 237, 522, 535
BstV1I GCAGC 3 cut(s) 105, 149, 251
BstV2I GAAGAC 1 cut(s) 426
BstXI CCANNNNNNTGG 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 445
BsuRI GGCC 2 cut(s) 279, 504
BtgI CCRYGG 1 cut(s) 438
BtgZI GCGATG 2 cut(s) 22, 168
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 216, 291, 503
Csp6I GTAC 1 cut(s) 346
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 2 cut(s) 213, 448
CviJI RGCY 8 cut(s) 57, 65, 96, 140, 279, 467, 487, 504
CviKI_1 RGCY 8 cut(s) 57, 65, 96, 140, 279, 467, 487, 504
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 4 cut(s) 171, 185, 229, 496
EaeI YGGCCR 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 216, 291
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 2 cut(s) 216, 451
FaiI YATR 9 cut(s) 23, 68, 214, 254, 445, 449, 491, 493, 575
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 1 cut(s) 373
FatI CATG 2 cut(s) 212, 447
FblI GTMKAC 2 cut(s) 384, 444
Fnu4HI GCNGC 3 cut(s) 94, 138, 240
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 3 cut(s) 94, 138, 240
FspBI CTAG 1 cut(s) 353
GluI GCNGC 3 cut(s) 94, 138, 240
HaeIII GGCC 2 cut(s) 279, 504
HapII CCGG 1 cut(s) 112
Hin1II CATG 2 cut(s) 216, 451
HincII GTYRAC 2 cut(s) 385, 543
HindII GTYRAC 2 cut(s) 385, 543
HinfI GANTC 2 cut(s) 86, 167
HpaII CCGG 1 cut(s) 112
HphI GGTGA 2 cut(s) 25, 37
Hpy166II GTNNAC 3 cut(s) 385, 445, 543
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 3 cut(s) 385, 445, 543
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 3 cut(s) 93, 137, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 4 cut(s) 171, 185, 229, 496
Hsp92II CATG 2 cut(s) 216, 451
Kpn2I TCCGGA 1 cut(s) 111
Lsp1109I GCAGC 3 cut(s) 105, 149, 251
LweI GCATC 2 cut(s) 124, 145
MaeI CTAG 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 176
MboII GAAGA 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 552
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 5 cut(s) 17, 73, 244, 336, 577
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 7 cut(s) 119, 155, 194, 319, 323, 328, 373
Mox20I TGGCCA 1 cut(s) 279
MroI TCCGGA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 279
MseI TTAA 2 cut(s) 59, 339
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 279
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 216, 451
NlaIV GGNNCC 3 cut(s) 292, 395, 455
PaqCI CACCTGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 86, 167
PflFI GACNNNGTC 2 cut(s) 289, 560
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 3 cut(s) 95, 139, 241
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 292, 395, 455
PspPI GGNCC 3 cut(s) 216, 291, 503
PstI CTGCAG 2 cut(s) 95, 241
PstNI CAGNNNCTG 1 cut(s) 236
PsyI GACNNNGTC 2 cut(s) 289, 560
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 257
SalI GTCGAC 1 cut(s) 383
SaqAI TTAA 2 cut(s) 59, 339
SatI GCNGC 3 cut(s) 94, 138, 240
Sau96I GGNCC 3 cut(s) 216, 291, 503
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 124, 145
SfcI CTRYAG 4 cut(s) 91, 237, 522, 535
SinI GGWCC 2 cut(s) 216, 291
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 97, 268
SmoI CTYRAG 2 cut(s) 97, 268
Sse9I AATT 5 cut(s) 17, 73, 244, 336, 577
SsiI CCGC 1 cut(s) 343
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 384
TaqII GACCGA 1 cut(s) 560
TasI AATT 5 cut(s) 17, 73, 244, 336, 577
TfiI GAWTC 2 cut(s) 86, 167
Tru1I TTAA 2 cut(s) 59, 339
Tru9I TTAA 2 cut(s) 59, 339
TscAI CASTG 1 cut(s) 301
TseI GCWGC 3 cut(s) 93, 137, 239
TspDTI ATGAA 5 cut(s) 10, 17, 19, 354, 409
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 2 cut(s) 289, 560
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 216, 291
XagI CCTNNNNNAGG 1 cut(s) 377
XapI RAATTY 2 cut(s) 73, 244
XcmI CCANNNNNNNNNTGG 2 cut(s) 301, 445
XmaJI CCTAGG 1 cut(s) 352
XmiI GTMKAC 2 cut(s) 384, 444
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.