Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000250.1

Orthogroup ID

OG0002413

Physical Location & Seq

Genomic Coordinates Reverse (-)

80791 .. 84274

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgcgcgtcatcgcgcgggaattcctccagactgaaagggaagcctgtggggcagtgaaactagatgaagaggacagcgagcatcagagttggatccaattacaacatgacgtggcatcccgcgatttccgttatctctctctctccatttatgttacccatctccgtgttcgacacggagttcatcaaatggctactaatggagaacatgcttctaccaaaccgcctccaaccccttctcctctaaggaatgccaaattctttcaggcaaatatgagaattttggttactggaggagctggattcattggctctcacctagtcgacaagctgatggaaaacgagaagaatgaggttattgttgcagataactacttcactggctcaaaggacaaccttaagaaatggattggtcatccaagattcgagcttattcgtcatgatgtcaccgagccattgctggttgaggttgatcaaatattccatcttgcttgccctgcttctccgatcttctacaaacacaatccagtaaagacaataaagacaaatgtgatcggtacattgaacatgctgggactggccaagcgagttggagcgaggattttgctcacttctacttcggaggtgtatggagatcctcttattcaccctcaggttgagagctattggggaaatgtgaatccaattggagttaggagttgctatgatgagggaaagcgagtggctgaaacattgatgtttgattatcacaggcagcacggcatagagatccggattgctaggattttcaacacttatggacctcgcatgaatattgatgatggccgtgtcgtcagcaacttcatagcccaagctatccggaatgaccccttgactgttcaagcacctggaactcagacaaggagtttctgttacgtctctgacatggttgatggccttattcgacttatggaaggagacaacactggtccaatcaacattgggaatccaggtgaatttacaatgctcgaactcgcagagaatgtcaaggagcttatcaatcctaaggtggagattaaaatggttgaaaacacacctgatgatcctcggcagaggaagcctgacatctcaaaagcaaaggagttgctgggatgggaaccaaaggtcaagttgcgtgatggtttgcccctcatggaagatgatttccgtacaagacttggtgtccccagaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016829 GO:0016830 GO:0016831 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

404

Amino Acids

45.8

Weight (kDa)

6.72

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	92 - 355	4.7e-07	RmlD substrate binding domain
Epimerase	PF01370	94 - 328	2.4e-45	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	94 - 200	1.3e-07	Polysaccharide biosynthesis protein
GDP_Man_Dehyd	PF16363	95 - 389	2.4e-49	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	95 - 247	1.7e-12	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	150 - 265	4.8e-06	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28755 AT2G28755
fragaria_vesca	FvH4_1g22830 FvH4_1g22850 FvH4_6g23040 FvH4_7g22040 FvH4_7g22040 FvH4_7g22040
prunus_persica	Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1 Prupe.2G232500_v2.0.a1
pyrus_communis	pycom01g15140 pycom07g18370
rosa_chinensis	RchiOBHm_Chr1g0366401 RchiOBHm_Chr2g0117191
rosa_laevigata	RLG00000018334 RLG00000027347
rosa_multiflora	Rmu_ssc0000250.1_g000016
rosa_roxburghii	Rroxscaffold_2G00126670 Rroxscaffold_4G00289940 Rroxscaffold_4G00290200
rosa_rugosa	Rorug01G0329500 Rorug01G0329600 Rorug01G0329700 Rorug01G0329800 Rorug01G0329900 Rorug02G0210800
rosa_samantha	Rh1AG337800 Rh1BG299300 Rh1DG331000 Rh2AG266900 Rh2BG279000 Rh2DG293100
rosa_wichuraiana	Rw1G029910 Rw2G021050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	4 cut(s)	6, 14, 16, 123
AccIII	TCCGGA	2 cut(s)	771, 858
AciI	CCGC	3 cut(s)	16, 121, 224
AclWI	GGATC	5 cut(s)	88, 101, 629, 763, 1076
AcoI	YGGCCR	2 cut(s)	579, 823
AcsI	RAATTY	4 cut(s)	20, 257, 279, 995
AfaI	GTAC	2 cut(s)	559, 1189
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	565, 790, 881, 1067
AhdI	GACNNNNNGTC	1 cut(s)	1199
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	886, 988
AluBI	AGCT	6 cut(s)	299, 331, 430, 663, 854, 1033
AluI	AGCT	6 cut(s)	299, 331, 430, 663, 854, 1033
Alw26I	GTCTC	2 cut(s)	922, 951
AlwI	GGATC	5 cut(s)	88, 101, 629, 763, 1076
Aor13HI	TCCGGA	2 cut(s)	771, 858
AoxI	GGCC	3 cut(s)	579, 823, 934
ApeKI	GCWGC	1 cut(s)	754
ApoI	RAATTY	4 cut(s)	20, 257, 279, 995
AspLEI	GCGC	2 cut(s)	6, 16
AspS9I	GGNCC	2 cut(s)	800, 968
AsuHPI	GGTGA	4 cut(s)	308, 439, 638, 1004
AvaII	GGWCC	2 cut(s)	800, 968
AxyI	CCTNAGG	2 cut(s)	651, 1044
BalI	TGGCCA	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	7 cut(s)	168, 328, 492, 815, 926, 1125, 1151
BceAI	ACGGC	2 cut(s)	775, 810
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	2 cut(s)	888, 990
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	922, 951
BfaI	CTAG	3 cut(s)	62, 320, 780
BfrI	CTTAAG	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	755
BlsI	GCNGC	1 cut(s)	756
Bme1390I	CCNGG	2 cut(s)	888, 990
Bme18I	GGWCC	2 cut(s)	800, 968
BmeRI	GACNNNNNGTC	1 cut(s)	1199
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	800, 968
BmiI	GGNNCC	2 cut(s)	95, 1137
BmrFI	CCNGG	2 cut(s)	888, 990
BmsI	GCATC	2 cut(s)	91, 125
BpmI	CTGGAG	2 cut(s)	11, 312
BsaJI	CCNNGG	1 cut(s)	1085
BsaWI	WCCGGW	2 cut(s)	771, 858
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 895, 925
Bse1I	ACTGG	5 cut(s)	295, 385, 527, 582, 970
Bse21I	CCTNAGG	2 cut(s)	651, 1044
Bse3DI	GCAATG	1 cut(s)	455
BseAI	TCCGGA	2 cut(s)	771, 858
BseBI	CCWGG	2 cut(s)	888, 990
BseDI	CCNNGG	1 cut(s)	1085
BseGI	GGATG	3 cut(s)	116, 415, 1136
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	665, 908
BseNI	ACTGG	5 cut(s)	295, 385, 527, 582, 970
BseRI	GAGGAG	2 cut(s)	231, 309
BseXI	GCAGC	1 cut(s)	766
BseYI	CCCAGC	2 cut(s)	571, 1126
Bsh1236I	CGCG	4 cut(s)	6, 14, 16, 123
BshFI	GGCC	3 cut(s)	581, 825, 936
BsiSI	CCGG	2 cut(s)	772, 859
BslFI	GGGAC	2 cut(s)	588, 1187
BsmAI	GTCTC	2 cut(s)	922, 951
BsmBI	CGTCTC	1 cut(s)	922
BsmFI	GGGAC	2 cut(s)	588, 1187
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	581, 825, 936
Bsp13I	TCCGGA	2 cut(s)	771, 858
Bsp143I	GATC	7 cut(s)	93, 472, 507, 552, 634, 768, 1081
BspACI	CCGC	3 cut(s)	16, 121, 224
BspANI	GGCC	3 cut(s)	581, 825, 936
BspCNI	CTCAG	2 cut(s)	664, 907
BspEI	TCCGGA	2 cut(s)	771, 858
BspFNI	CGCG	4 cut(s)	6, 14, 16, 123
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	95, 1137
BspPI	GGATC	5 cut(s)	88, 101, 629, 763, 1076
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	455
BsrI	ACTGG	5 cut(s)	295, 385, 527, 582, 970
BssECI	CCNNGG	1 cut(s)	1085
BssMI	GATC	7 cut(s)	93, 472, 507, 552, 634, 768, 1081
Bst2UI	CCWGG	2 cut(s)	888, 990
Bst4CI	ACNGT	1 cut(s)	877
Bst6I	CTCTTC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	80, 493
BstDEI	CTNAG	4 cut(s)	245, 651, 894, 1044
BstF5I	GGATG	3 cut(s)	116, 415, 1136
BstFNI	CGCG	4 cut(s)	6, 14, 16, 123
BstHHI	GCGC	2 cut(s)	6, 16
BstKTI	GATC	7 cut(s)	96, 475, 510, 555, 637, 771, 1084
BstMAI	GTCTC	2 cut(s)	922, 951
BstMBI	GATC	7 cut(s)	93, 472, 507, 552, 634, 768, 1081
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 497, 1096
BstNI	CCWGG	2 cut(s)	888, 990
BstNSI	RCATGY	2 cut(s)	212, 571
BstSCI	CCNGG	2 cut(s)	886, 988
BstUI	CGCG	4 cut(s)	6, 14, 16, 123
BstV1I	GCAGC	1 cut(s)	766
BstX2I	RGATCY	3 cut(s)	93, 634, 768
BstYI	RGATCY	3 cut(s)	93, 634, 768
Bsu36I	CCTNAGG	2 cut(s)	651, 1044
BsuRI	GGCC	3 cut(s)	581, 825, 936
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	116, 415, 1136
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	60, 378, 963
Cac8I	GCNNGC	2 cut(s)	80, 493
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	2 cut(s)	6, 16
Cfr13I	GGNCC	2 cut(s)	800, 968
Csp6I	GTAC	2 cut(s)	558, 1188
CviAII	CATG	7 cut(s)	107, 209, 440, 568, 808, 925, 1171
CviQI	GTAC	2 cut(s)	558, 1188
DdeI	CTNAG	4 cut(s)	245, 651, 894, 1044
DpnI	GATC	7 cut(s)	95, 474, 509, 554, 636, 770, 1083
DpnII	GATC	7 cut(s)	93, 472, 507, 552, 634, 768, 1081
DriI	GACNNNNNGTC	1 cut(s)	1199
EaeI	YGGCCR	2 cut(s)	579, 823
Eam1104I	CTCTTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	1199
EarI	CTCTTC	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	800, 968
Eco81I	CCTNAGG	2 cut(s)	651, 1044
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	886, 988
Esp3I	CGTCTC	1 cut(s)	922
FaeI	CATG	7 cut(s)	110, 212, 443, 571, 811, 928, 1174
FaqI	GGGAC	2 cut(s)	588, 1187
FatI	CATG	7 cut(s)	106, 208, 439, 567, 807, 924, 1170
FauI	CCCGC	2 cut(s)	9, 128
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	755
FokI	GGATG	3 cut(s)	103, 402, 1143
Fsp4HI	GCNGC	1 cut(s)	755
FspBI	CTAG	3 cut(s)	62, 320, 780
GlaI	GCGC	2 cut(s)	5, 15
GluI	GCNGC	1 cut(s)	755
GsaI	CCCAGC	2 cut(s)	575, 1130
GsuI	CTGGAG	2 cut(s)	11, 312
HaeIII	GGCC	3 cut(s)	581, 825, 936
HapII	CCGG	2 cut(s)	772, 859
HhaI	GCGC	2 cut(s)	6, 16
Hin1II	CATG	7 cut(s)	110, 212, 443, 571, 811, 928, 1174
Hin6I	GCGC	2 cut(s)	4, 14
HinP1I	GCGC	2 cut(s)	4, 14
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	303, 423, 679, 985
HpaII	CCGG	2 cut(s)	772, 859
HphI	GGTGA	4 cut(s)	308, 439, 638, 1004
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	5 cut(s)	87, 507, 622, 897, 922
Hpy188III	TCNNGA	4 cut(s)	28, 440, 772, 859
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	246, 947
HpyCH4III	ACNGT	1 cut(s)	877
HpyCH4IV	ACGT	2 cut(s)	111, 915
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 497, 1096
HpyF3I	CTNAG	4 cut(s)	245, 651, 894, 1044
HpySE526I	ACGT	2 cut(s)	111, 915
Hsp92II	CATG	7 cut(s)	110, 212, 443, 571, 811, 928, 1174
HspAI	GCGC	2 cut(s)	4, 14
Kpn2I	TCCGGA	2 cut(s)	771, 858
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	7 cut(s)	93, 472, 507, 552, 634, 768, 1081
LmnI	GCTCC	3 cut(s)	296, 593, 1030
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	2 cut(s)	91, 125
MaeI	CTAG	3 cut(s)	62, 320, 780
MaeII	ACGT	2 cut(s)	111, 915
MaeIII	GTNAC	4 cut(s)	154, 286, 445, 911
MalI	GATC	7 cut(s)	95, 474, 509, 554, 636, 770, 1083
MboI	GATC	7 cut(s)	93, 472, 507, 552, 634, 768, 1081
MboII	GAAGA	4 cut(s)	80, 358, 502, 1187
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	3 cut(s)	93, 634, 768
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	7 cut(s)	20, 98, 257, 279, 684, 995, 1210
MluNI	TGGCCA	1 cut(s)	581
MmeI	TCCRAC	3 cut(s)	71, 254, 571
Mox20I	TGGCCA	1 cut(s)	581
MroI	TCCGGA	2 cut(s)	771, 858
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	3 cut(s)	399, 1056, 1213
MslI	CAYNNNNRTG	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	2 cut(s)	772, 859
MspR9I	CCNGG	2 cut(s)	888, 990
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	888, 990
MvnI	CGCG	4 cut(s)	6, 14, 16, 123
MwoI	GCNNNNNNNGC	3 cut(s)	50, 497, 1096
NdeII	GATC	7 cut(s)	93, 472, 507, 552, 634, 768, 1081
NlaIII	CATG	7 cut(s)	110, 212, 443, 571, 811, 928, 1174
NlaIV	GGNNCC	2 cut(s)	95, 1137
NmeAIII	GCCGAG	1 cut(s)	1066
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	2 cut(s)	212, 571
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	4 cut(s)	303, 423, 679, 985
PkrI	GCNGC	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	886, 988
PspFI	CCCAGC	2 cut(s)	571, 1126
PspGI	CCWGG	2 cut(s)	886, 988
PspN4I	GGNNCC	2 cut(s)	95, 1137
PspPI	GGNCC	2 cut(s)	800, 968
PsuI	RGATCY	3 cut(s)	93, 634, 768
RsaI	GTAC	2 cut(s)	559, 1189
RsaNI	GTAC	2 cut(s)	558, 1188
RseI	CAYNNNNRTG	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	399, 1056, 1213
SatI	GCNGC	1 cut(s)	755
Sau3AI	GATC	7 cut(s)	93, 472, 507, 552, 634, 768, 1081
Sau96I	GGNCC	2 cut(s)	800, 968
ScrFI	CCNGG	2 cut(s)	888, 990
SfaNI	GCATC	2 cut(s)	91, 125
SinI	GGWCC	2 cut(s)	800, 968
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	7 cut(s)	20, 98, 257, 279, 684, 995, 1210
SsiI	CCGC	3 cut(s)	16, 121, 224
SspI	AATATT	2 cut(s)	480, 814
SspMI	CTAG	3 cut(s)	62, 320, 780
StyD4I	CCNGG	2 cut(s)	886, 988
TaaI	ACNGT	1 cut(s)	877
TaiI	ACGT	2 cut(s)	114, 918
TaqI	TCGA	5 cut(s)	172, 324, 426, 943, 1008
TasI	AATT	7 cut(s)	20, 98, 257, 279, 684, 995, 1210
TfiI	GAWTC	4 cut(s)	303, 423, 679, 985
Tru1I	TTAA	3 cut(s)	399, 1056, 1213
Tru9I	TTAA	3 cut(s)	399, 1056, 1213
TscAI	CASTG	3 cut(s)	60, 385, 970
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	1 cut(s)	754
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	5 cut(s)	81, 173, 295, 824, 832
TspGWI	ACGGA	4 cut(s)	119, 155, 192, 1175
TspRI	CASTG	3 cut(s)	60, 385, 970
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	800, 968
XapI	RAATTY	4 cut(s)	20, 257, 279, 995
XceI	RCATGY	2 cut(s)	212, 571
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	3 cut(s)	62, 320, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.