Rmu_ssc0000387.1_g000035

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000387.1
Physical Location & Seq
Forward (+)
159169 .. 159489
321 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
atgaacttatgctgtgatgttagttgcggtgaggaaaccgagtgccacgatggagtggcctgcctccgtcatatctccggcaagctgcacaagaaggtctggattgccgccggccatattctctctctctctctctctctctctctgatccctctgtctgaaatctcaggtaaattccaagtctttgatctggaggccaagagtcgtgaaatcgtctacatcgctctggcctgcaataaattcagagaagcaaagccgtcgagcaagttgtgcttggagaactccgacgagatggagtcctcggcagtgtctgtccattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.61

Weight (kDa)

5.91

Isoelectric Point (pI)

64.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AciI CCGC 2 cut(s) 27, 108
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 173, 239
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AlwI GGATC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 4 cut(s) 57, 112, 195, 228
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 2 cut(s) 173, 239
AsuHPI GGTGA 1 cut(s) 41
BbvI GCAGC 1 cut(s) 72
BccI CCATC 2 cut(s) 44, 286
BceAI ACGGC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BisI GCNGC 2 cut(s) 86, 108
BlsI GCNGC 2 cut(s) 87, 109
BpmI CTGGAG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 300
Bse118I RCCGGY 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 4 cut(s) 59, 114, 197, 230
BsiSI CCGG 2 cut(s) 78, 111
BsnI GGCC 4 cut(s) 59, 114, 197, 230
Bsp143I GATC 2 cut(s) 147, 187
BspACI CCGC 2 cut(s) 27, 108
BspANI GGCC 4 cut(s) 59, 114, 197, 230
BspCNI CTCAG 1 cut(s) 179
BspPI GGATC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 147, 187
BstAPI GCANNNNNTGC 1 cut(s) 270
BstC8I GCNNGC 4 cut(s) 61, 83, 112, 232
BstDEI CTNAG 1 cut(s) 166
BstKTI GATC 2 cut(s) 150, 190
BstMBI GATC 2 cut(s) 147, 187
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 72
BsuRI GGCC 4 cut(s) 59, 114, 197, 230
BtgZI GCGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 4 cut(s) 61, 83, 112, 232
CaiI CAGNNNCTG 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 110
CviJI RGCY 6 cut(s) 59, 85, 114, 197, 230, 256
CviKI_1 RGCY 6 cut(s) 59, 85, 114, 197, 230, 256
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 149, 189
DpnII GATC 2 cut(s) 147, 187
EaeI YGGCCR 1 cut(s) 112
FaiI YATR 3 cut(s) 10, 72, 117
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 86, 108
Fsp4HI GCNGC 2 cut(s) 86, 108
GluI GCNGC 2 cut(s) 86, 108
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 4 cut(s) 59, 114, 197, 230
HapII CCGG 2 cut(s) 78, 111
HinfI GANTC 2 cut(s) 202, 296
HpaII CCGG 2 cut(s) 78, 111
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 147, 160, 245, 286
Hpy188III TCNNGA 3 cut(s) 100, 191, 206
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 262, 290
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 88, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 166
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 147, 187
LpnPI CCDG 8 cut(s) 73, 85, 91, 124, 153, 176, 212, 244
Lsp1109I GCAGC 1 cut(s) 72
MalI GATC 2 cut(s) 149, 189
MboI GATC 2 cut(s) 147, 187
MluCI AATT 2 cut(s) 173, 239
MlyI GAGTC 2 cut(s) 211, 305
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 25, 74, 162, 187, 310
MroNI GCCGGC 1 cut(s) 110
MspI CCGG 2 cut(s) 78, 111
MwoI GCNNNNNNNGC 1 cut(s) 270
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 2 cut(s) 147, 187
NgoMIV GCCGGC 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 281
PdiI GCCGGC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 87, 109
PleI GAGTC 2 cut(s) 210, 304
PpsI GAGTC 2 cut(s) 210, 304
PstNI CAGNNNCTG 1 cut(s) 311
SatI GCNGC 2 cut(s) 86, 108
Sau3AI GATC 2 cut(s) 147, 187
SchI GAGTC 2 cut(s) 211, 305
SetI ASST 3 cut(s) 87, 99, 172
Sse9I AATT 2 cut(s) 173, 239
SsiI CCGC 2 cut(s) 27, 108
TaqI TCGA 1 cut(s) 260
TasI AATT 2 cut(s) 173, 239
TauI GCSGC 1 cut(s) 110
TscAI CASTG 1 cut(s) 312
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 312
XapI RAATTY 2 cut(s) 173, 239
XmiI GTMKAC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.