Rmu_ssc0000412.1_g000002

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000412.1
OG0005253
Physical Location & Seq
Reverse (-)
24741 .. 26507
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 861 bp
atggaggagttcccctctcatctatcaaatgggaagtgcatgctcacaatagaagcaaaggacaatgaaaagtccatcgaatctctagatagaggactcacagagtatggttgtccgcattatcggcgaaggtgccgcattagggctccttgttgcaatgagatttttgattgtcgccattgtcataatgaagcaaagaacaatattaatgttgaaccaaaactcagacatgacataccacggcatcaagtcgaacaggtgatatgttcactttgtggcactgagcaagaggttcaacaagtctgtgtcaactgtggtgtatgcatgggcaaatacttctgtgagacatgcaagctatttgatgatgatatatcgaagaaacagtaccattgcgatggctgtgggatatgcagaattggggggcgtgataatttctttcattgctacaaatgtggtggcggttccaggcgacgacggcggcgcggagctggccggagggaggccggaggcgtcccagacctcttctgggcggcgttcgaggtcggaggaggtcgggcttgccggtttctgggcagccacctcacctgcagttgcaggttctctgcagcactgcagaccctctttgctccaagtcagtttgtgatatgtccaaggtatgggagaaatatgatatggagatcgcagctacaccaatgcccgaaccatatcaaaataaacaagtttcaattctgtgcaacgactgtgggaagagctcacaagtgcagtttcacattgtggcgcagaaatgctcaaattgcaaatcttacaatactcgccaaacaagaggctgagcaagtggcatggttgcaccacatttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

286

Amino Acids

32.79

Weight (kDa)

8.95

Isoelectric Point (pI)

65.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 38 - 112 4.1e-19 CHY zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 593
Acc36I ACCTGC 2 cut(s) 585, 593
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 656
AccII CGCG 1 cut(s) 483
AciI CCGC 6 cut(s) 116, 136, 459, 478, 483, 530
AcoI YGGCCR 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 510
AdeI CACNNNGTG 2 cut(s) 275, 774
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 5 cut(s) 142, 499, 526, 568, 656
AgsI TTSAA 3 cut(s) 215, 296, 725
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 4 cut(s) 355, 488, 685, 752
AluI AGCT 4 cut(s) 355, 488, 685, 752
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 1 cut(s) 338
AoxI GGCC 2 cut(s) 490, 501
ApeKI GCWGC 3 cut(s) 573, 605, 682
AseI ATTAAT 1 cut(s) 207
AspLEI GCGC 2 cut(s) 483, 780
AsuHPI GGTGA 2 cut(s) 271, 574
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 2 cut(s) 148, 754
BarI GAAGNNNNNNTAC 2 cut(s) 368, 400
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 3 cut(s) 585, 617, 694
BccI CCATC 2 cut(s) 83, 389
BceAI ACGGC 2 cut(s) 257, 491
BciT130I CCWGG 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 3 cut(s) 586, 603, 611
BfuAI ACCTGC 2 cut(s) 585, 593
BisI GCNGC 6 cut(s) 136, 479, 531, 574, 606, 683
BlpI GCTNAGC 1 cut(s) 828
BlsI GCNGC 6 cut(s) 137, 480, 532, 575, 607, 684
Bme1390I CCNGG 1 cut(s) 466
BmiI GGNNCC 3 cut(s) 134, 147, 463
BmrFI CCNGG 1 cut(s) 466
BmsI GCATC 1 cut(s) 253
BplI GAGNNNNNCTC 1 cut(s) 31
Bpu1102I GCTNAGC 1 cut(s) 828
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 239, 650
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 499, 526, 568, 656
Bse118I RCCGGY 1 cut(s) 561
Bse3DI GCAATG 3 cut(s) 163, 388, 439
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 2 cut(s) 239, 650
BseLI CCNNNNNNNGG 5 cut(s) 142, 499, 526, 568, 656
BseMI GCAATG 3 cut(s) 163, 388, 439
BseMII CTCAG 3 cut(s) 238, 273, 819
BseRI GAGGAG 2 cut(s) 20, 561
BseXI GCAGC 3 cut(s) 585, 617, 694
BsgI GTGCAG 1 cut(s) 781
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 2 cut(s) 492, 503
BshNI GGYRCC 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 754
BsiSI CCGG 3 cut(s) 493, 504, 562
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 5 cut(s) 142, 499, 526, 568, 656
BsmAI GTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 2 cut(s) 492, 503
Bsp1286I GDGCHC 2 cut(s) 148, 754
Bsp143I GATC 1 cut(s) 677
Bsp1720I GCTNAGC 1 cut(s) 828
BspACI CCGC 6 cut(s) 116, 136, 459, 478, 483, 530
BspANI GGCC 2 cut(s) 492, 503
BspCNI CTCAG 3 cut(s) 237, 274, 820
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 3 cut(s) 134, 147, 463
BspMAI CTGCAG 3 cut(s) 590, 607, 615
BspMI ACCTGC 2 cut(s) 585, 593
BspQI GCTCTTC 1 cut(s) 742
BspT107I GGYRCC 1 cut(s) 132
BsrDI GCAATG 3 cut(s) 163, 388, 439
BsrFI RCCGGY 1 cut(s) 561
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 239, 650
BssMI GATC 1 cut(s) 677
BssNI GRCGYC 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 650
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 3 cut(s) 314, 384, 742
Bst6I CTCTTC 2 cut(s) 527, 742
BstACI GRCGYC 1 cut(s) 510
BstC8I GCNNGC 4 cut(s) 41, 353, 490, 559
BstDEI CTNAG 3 cut(s) 224, 282, 828
BstDSI CCRYGG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 2 cut(s) 483, 780
BstKTI GATC 1 cut(s) 680
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 1 cut(s) 677
BstMWI GCNNNNNNNGC 4 cut(s) 124, 475, 489, 794
BstNI CCWGG 1 cut(s) 466
BstNSI RCATGY 2 cut(s) 43, 351
BstSCI CCNGG 1 cut(s) 464
BstSFI CTRYAG 3 cut(s) 586, 603, 611
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 3 cut(s) 585, 617, 694
BstXI CCANNNNNNTGG 1 cut(s) 395
BsuRI GGCC 2 cut(s) 492, 503
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 408
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 2 cut(s) 279, 608
BveI ACCTGC 2 cut(s) 585, 593
Cac8I GCNNGC 4 cut(s) 41, 353, 490, 559
CfoI GCGC 2 cut(s) 483, 780
Cfr10I RCCGGY 1 cut(s) 561
CseI GACGC 1 cut(s) 499
Csp6I GTAC 1 cut(s) 385
CspCI CAANNNNNGTGG 4 cut(s) 436, 471, 723, 758
CviAII CATG 5 cut(s) 40, 230, 325, 348, 840
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 3 cut(s) 224, 282, 828
DpnI GATC 1 cut(s) 679
DpnII GATC 1 cut(s) 677
DraIII CACNNNGTG 2 cut(s) 275, 774
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 527, 742
EarI CTCTTC 2 cut(s) 527, 742
Ecl136II GAGCTC 1 cut(s) 752
Eco130I CCWWGG 1 cut(s) 650
Eco24I GRGCYC 2 cut(s) 148, 754
Eco53kI GAGCTC 1 cut(s) 752
EcoICRI GAGCTC 1 cut(s) 752
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 650
EcoT22I ATGCAT 1 cut(s) 326
EcoT38I GRGCYC 2 cut(s) 148, 754
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 5 cut(s) 43, 233, 328, 351, 843
FaqI GGGAC 1 cut(s) 497
FatI CATG 5 cut(s) 39, 229, 324, 347, 839
Fnu4HI GCNGC 6 cut(s) 136, 479, 531, 574, 606, 683
FriOI GRGCYC 2 cut(s) 148, 754
Fsp4HI GCNGC 6 cut(s) 136, 479, 531, 574, 606, 683
FspBI CTAG 1 cut(s) 86
GlaI GCGC 2 cut(s) 482, 779
GluI GCNGC 6 cut(s) 136, 479, 531, 574, 606, 683
HaeIII GGCC 2 cut(s) 492, 503
HapII CCGG 3 cut(s) 493, 504, 562
HgaI GACGC 1 cut(s) 499
HhaI GCGC 2 cut(s) 483, 780
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 5 cut(s) 43, 233, 328, 351, 843
Hin6I GCGC 2 cut(s) 481, 778
HinP1I GCGC 2 cut(s) 481, 778
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 2 cut(s) 80, 96
HpaII CCGG 3 cut(s) 493, 504, 562
HphI GGTGA 2 cut(s) 271, 574
Hpy166II GTNNAC 2 cut(s) 269, 310
Hpy188I TCNGA 2 cut(s) 227, 545
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 269, 310
Hpy99I CGWCG 2 cut(s) 474, 477
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 3 cut(s) 314, 384, 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 475, 489, 794
HpyF3I CTNAG 3 cut(s) 224, 282, 828
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 5 cut(s) 43, 233, 328, 351, 843
HspAI GCGC 2 cut(s) 481, 778
Kzo9I GATC 1 cut(s) 677
LguI GCTCTTC 1 cut(s) 742
LmnI GCTCC 3 cut(s) 151, 485, 631
Lsp1109I GCAGC 3 cut(s) 585, 617, 694
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 679
MboI GATC 1 cut(s) 677
MboII GAAGA 3 cut(s) 388, 514, 759
MhlI GDGCHC 2 cut(s) 148, 754
MluCI AATT 4 cut(s) 414, 430, 725, 792
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 523
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 3 cut(s) 493, 504, 562
MspR9I CCNGG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 466
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 4 cut(s) 124, 475, 489, 794
NdeII GATC 1 cut(s) 677
NlaIII CATG 5 cut(s) 43, 233, 328, 351, 843
NlaIV GGNNCC 3 cut(s) 134, 147, 463
NsiI ATGCAT 1 cut(s) 326
NspI RCATGY 2 cut(s) 43, 351
PaeI GCATGC 1 cut(s) 43
PaqCI CACCTGC 1 cut(s) 593
PciSI GCTCTTC 1 cut(s) 742
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 656
PkrI GCNGC 6 cut(s) 137, 480, 532, 575, 607, 684
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 3 cut(s) 134, 147, 463
PstI CTGCAG 3 cut(s) 590, 607, 615
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 754
SapI GCTCTTC 1 cut(s) 742
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 6 cut(s) 136, 479, 531, 574, 606, 683
Sau3AI GATC 1 cut(s) 677
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 2 cut(s) 148, 754
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 3 cut(s) 586, 603, 611
SmiMI CAYNNNNRTG 1 cut(s) 393
SphI GCATGC 1 cut(s) 43
Sse9I AATT 4 cut(s) 414, 430, 725, 792
SsiI CCGC 6 cut(s) 116, 136, 459, 478, 483, 530
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 754
StyD4I CCNGG 1 cut(s) 464
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 3 cut(s) 314, 384, 742
TaqI TCGA 4 cut(s) 78, 252, 374, 537
TasI AATT 4 cut(s) 414, 430, 725, 792
TauI GCSGC 3 cut(s) 138, 481, 533
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 286, 615
TseI GCWGC 3 cut(s) 573, 605, 682
TspDTI ATGAA 3 cut(s) 81, 204, 428
TspRI CASTG 2 cut(s) 286, 615
Van91I CCANNNNNTGG 1 cut(s) 656
VspI ATTAAT 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 85
XceI RCATGY 2 cut(s) 43, 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 522
XspI CTAG 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.