Rmu_ssc0000454.1_g000013

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000454.1
OG0014862
Physical Location & Seq
Reverse (-)
50074 .. 50502
429 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atgcacttatgctgtgatgttagttgcggtgaggaagccgagtgccacgacggcgtggcccgcctccgtcatatcttcggcaagttgcacaagaaggtctggattgccgccggccatattctctctctctctctctctctgatccctctgtctgaaatcttaggtaaattccaagtctcagatctggaggccaagagtcgtgaaaccttctacatcgctctggcctgcaataaattcagagaagcaaagcagtcgagcaagttgtgcttggagaactctgacgagatggagtccctggcagtgtctgtccttcagagaattggattcaagttttgctttgggttttgcattttgctaggaaatgtcatcatcccatctaattgcattttgcagatgaaaaaggaaataaaaatagagaagaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

8.37

Isoelectric Point (pI)

65.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 27, 61, 108
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 167, 233
AcuI CTGAAG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 4 cut(s) 57, 112, 189, 222
ApoI RAATTY 2 cut(s) 167, 233
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 41
BccI CCATC 2 cut(s) 280, 382
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 51
BglII AGATCT 1 cut(s) 181
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 294
Bse118I RCCGGY 1 cut(s) 110
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 192
BshFI GGCC 4 cut(s) 59, 114, 191, 224
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 4 cut(s) 59, 114, 191, 224
Bsp143I GATC 2 cut(s) 141, 181
BspACI CCGC 3 cut(s) 27, 61, 108
BspANI GGCC 4 cut(s) 59, 114, 191, 224
BspCNI CTCAG 1 cut(s) 191
BspPI GGATC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 141, 181
Bst2UI CCWGG 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 264
BstC8I GCNNGC 3 cut(s) 61, 112, 226
BstDEI CTNAG 2 cut(s) 160, 178
BstF5I GGATG 1 cut(s) 369
BstKTI GATC 2 cut(s) 144, 184
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 2 cut(s) 141, 181
BstMWI GCNNNNNNNGC 3 cut(s) 51, 60, 264
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 4 cut(s) 59, 114, 191, 224
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 369
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 3 cut(s) 61, 112, 226
CaiI CAGNNNCTG 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 58
CviJI RGCY 5 cut(s) 38, 59, 114, 191, 224
CviKI_1 RGCY 5 cut(s) 38, 59, 114, 191, 224
DdeI CTNAG 2 cut(s) 160, 178
DpnI GATC 2 cut(s) 143, 183
DpnII GATC 2 cut(s) 141, 181
EaeI YGGCCR 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 294
FaiI YATR 3 cut(s) 10, 72, 117
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 320, 352
FaqI GGGAC 1 cut(s) 277
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 4 cut(s) 59, 114, 191, 224
HapII CCGG 1 cut(s) 111
HinfI GANTC 3 cut(s) 196, 290, 324
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 6 cut(s) 141, 154, 181, 239, 280, 315
Hpy188III TCNNGA 3 cut(s) 100, 185, 200
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 88, 217, 320
HpyCH4V TGCA 6 cut(s) 4, 88, 228, 348, 384, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 60, 264
HpyF3I CTNAG 2 cut(s) 160, 178
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 141, 181
LpnPI CCDG 7 cut(s) 85, 124, 170, 206, 238, 281, 308
MaeI CTAG 1 cut(s) 356
MalI GATC 2 cut(s) 143, 183
MboI GATC 2 cut(s) 141, 181
MboII GAAGA 1 cut(s) 67
MflI RGATCY 1 cut(s) 181
MluCI AATT 4 cut(s) 167, 233, 318, 379
MlyI GAGTC 2 cut(s) 205, 299
MnlI CCTC 4 cut(s) 25, 74, 156, 181
MroNI GCCGGC 1 cut(s) 110
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 51, 60, 264
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 2 cut(s) 141, 181
NgoMIV GCCGGC 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 2 cut(s) 204, 298
PpsI GAGTC 2 cut(s) 204, 298
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspPI GGNCC 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 181
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 2 cut(s) 141, 181
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 2 cut(s) 205, 299
ScrFI CCNGG 1 cut(s) 296
SetI ASST 3 cut(s) 99, 166, 209
Sse9I AATT 4 cut(s) 167, 233, 318, 379
SsiI CCGC 3 cut(s) 27, 61, 108
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 294
TaqI TCGA 1 cut(s) 254
TasI AATT 4 cut(s) 167, 233, 318, 379
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 324
TscAI CASTG 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 306
XapI RAATTY 2 cut(s) 167, 233
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.