Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006435

Physical Location & Seq

Genomic Coordinates Forward (+)

6898018 .. 6926415

Gene Structure 28398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGAGCAACAAATTGCTAGGGAAAGAGCCGCTTGGGAGGAAAGGATTCAGAAGTTAGAAGCGAAGTTTGATGGGAAAGAGATGCCAGCTAACTCACCCAAACCTGTGACACCGCTGAATGATTTAGGGTCTGGCCAGGGCAGCTGTTCTAGGCAACTTGACAAGGCTGGTTTGAAAGTTATTGAAAGTGAAACCGCCAAAACTGCCAAGAAGAAGTTAGATTTAGGGGAGGACCAGCAGAAAGTAGTTGAGGAGGATGAAATTTTTGTGGATGGGGAGCTGAACATCAAACTAACCTCGATTATTGAGGAGGAGGTTAGGAATGATTTAACTCCGGAAAAAAATGCAGTTTTGGAGCAAGTGCAAGTGCTGGTTCAGTCCAACAATATTGTCCAGTCAGGTTGTAAACTTGCGATAGATTCATTGGACAACATAGTGGCTGAAGGAACCATCATTCAAGTGGATGTTGAGTCCAGCAAGCAAACTATCCATGGTGTTCCGTTGGCTGAGGAAAATGTCCGAGTGTCGATCACCAAATCTATTGTTGCTAATGCTTTGCTACCAATTCCTATTAAAGATGAGATTCTGTTTGTCTGCGATGCAATTGGTACATGCGTTGCTTGGCCTAGAAACTGGGTTATACCCACTGTTTCTGATGCAAAGCAAGAAAAGCGTAAAATTGTGAGGAGGAAAAAGAAGGATACACATGATGATTTTTTTTATCATGATGATTTGGACAACCTGCCACCCAATTTGCCTCCACCGCTTAAGACATTGAGCACATGGGCTAATGATTACTTGAAGGATGGGGTTACTATCCACACAACCTTAGGCGAGGAATTATTCGGATATCAGGTTGCCATCTTCAGAAGGGATGTGTATGCCATGACCAACATGAAGGAGCTTTCTGGCAACTGTATTGTGATGTATATGAGCTTTCTTTATCAAGTGTTAAAGAAATCGAAGATGCTTGACATGATTGGCTTAGTAGACCCTGCACACACTGGTGTCATTGGTTGTGGAAATCCGACTGAACGGGCTCGTTCTTTGTCAGCTTCTTATGAAAGAGGAAAGCCTGGTCAGATTTTTTTGGTGCCCTATAACTCAGGCTGTCATTGGATGTTGACAGTGGCGAACCCCACTGAAGAAGTTGTGTATTTCATGGATCCGCTAAAGAGGCGACTCGTCACCGATGAATGGAGAACTATTGTGGACAACTCCATCAAAATATTCAATGCACAAAAGCATAGGAAAGGCCGAAAGACAGTTCAATGGAAAAACTGTGCAGGCATTCCGGAGCAGATGGGTGATAAGACTTGTGGATATTGGATTATGCATTACATGAGGGATATAGTGGAGGACAAAAACCAAGAGTGGAGTGCTAAGGTAATCAGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

466

Amino Acids

52.66

Weight (kDa)

5.89

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	133 - 214	1.1e-10	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006435)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	1093
AccI	GTMKAC	1 cut(s)	990
AccIII	TCCGGA	2 cut(s)	334, 1294
AciI	CCGC	5 cut(s)	30, 113, 195, 764, 1169
AclWI	GGATC	2 cut(s)	1160, 1173
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	3 cut(s)	462, 850, 1164
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	1 cut(s)	1197
AflII	CTTAAG	1 cut(s)	767
AgsI	TTSAA	6 cut(s)	175, 185, 458, 802, 1234, 1271
AjnI	CCWGG	2 cut(s)	135, 1075
AleI	CACNNNNGTG	1 cut(s)	1005
AluBI	AGCT	6 cut(s)	89, 144, 280, 904, 936, 1055
AluI	AGCT	6 cut(s)	89, 144, 280, 904, 936, 1055
Alw21I	GWGCWC	1 cut(s)	782
AlwI	GGATC	2 cut(s)	1160, 1173
Aor13HI	TCCGGA	2 cut(s)	334, 1294
AoxI	GGCC	3 cut(s)	133, 623, 1255
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	4 cut(s)	87, 523, 1180, 1319
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	829
BaeGI	GKGCMC	1 cut(s)	1098
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BalI	TGGCCA	1 cut(s)	135
BamHI	GGATCC	1 cut(s)	1165
BanI	GGYRCC	1 cut(s)	1093
BanII	GRGCYC	1 cut(s)	1042
Bbv12I	GWGCWC	1 cut(s)	782
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	7 cut(s)	65, 266, 458, 800, 869, 1229, 1297
BciT130I	CCWGG	2 cut(s)	137, 1077
BciVI	GTATCC	1 cut(s)	694
BfaI	CTAG	3 cut(s)	18, 150, 627
BfrI	CTTAAG	1 cut(s)	767
BfuAI	ACCTGC	1 cut(s)	750
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	2 cut(s)	30, 142
BlsI	GCNGC	2 cut(s)	31, 143
Bme1390I	CCNGG	2 cut(s)	137, 1077
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	448, 1095, 1167
BmrFI	CCNGG	2 cut(s)	137, 1077
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	4 cut(s)	72, 589, 646, 957
BmuI	ACTGGG	1 cut(s)	643
Bpu10I	CCTNAGC	2 cut(s)	507, 1383
BsaJI	CCNNGG	2 cut(s)	136, 490
BsaWI	WCCGGW	2 cut(s)	334, 1294
Bsc4I	CCNNNNNNNGG	1 cut(s)	1197
Bse1I	ACTGG	3 cut(s)	394, 638, 1009
Bse21I	CCTNAGG	1 cut(s)	829
BseAI	TCCGGA	2 cut(s)	334, 1294
BseBI	CCWGG	2 cut(s)	137, 1077
BseDI	CCNNGG	2 cut(s)	136, 490
BseGI	GGATG	6 cut(s)	262, 277, 469, 811, 880, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	1197
BseMII	CTCAG	2 cut(s)	498, 1119
BseNI	ACTGG	3 cut(s)	394, 638, 1009
BseRI	GAGGAG	4 cut(s)	266, 323, 326, 700
BseSI	GKGCMC	1 cut(s)	1098
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	981, 1305
BshFI	GGCC	3 cut(s)	135, 625, 1257
BshNI	GGYRCC	1 cut(s)	1093
BsiHKAI	GWGCWC	1 cut(s)	782
BsiSI	CCGG	2 cut(s)	335, 1295
BslI	CCNNNNNNNGG	1 cut(s)	1197
BsmI	GAATGC	1 cut(s)	1290
BsnI	GGCC	3 cut(s)	135, 625, 1257
Bsp1286I	GDGCHC	3 cut(s)	782, 1042, 1098
Bsp13I	TCCGGA	2 cut(s)	334, 1294
Bsp143I	GATC	2 cut(s)	528, 1165
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	5 cut(s)	30, 113, 195, 764, 1169
BspANI	GGCC	3 cut(s)	135, 625, 1257
BspCNI	CTCAG	2 cut(s)	499, 1118
BspEI	TCCGGA	2 cut(s)	334, 1294
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	3 cut(s)	448, 1095, 1167
BspMI	ACCTGC	1 cut(s)	750
BspPI	GGATC	2 cut(s)	1160, 1173
BspT107I	GGYRCC	1 cut(s)	1093
BspTI	CTTAAG	1 cut(s)	767
BsrI	ACTGG	3 cut(s)	394, 638, 1009
BssECI	CCNNGG	2 cut(s)	136, 490
BssMI	GATC	2 cut(s)	528, 1165
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	2 cut(s)	137, 1077
Bst4CI	ACNGT	5 cut(s)	649, 917, 1129, 1267, 1283
BstAFI	CTTAAG	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	87, 479, 1288
BstDEI	CTNAG	5 cut(s)	507, 829, 985, 1105, 1383
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	6 cut(s)	262, 277, 469, 811, 880, 1125
BstKTI	GATC	2 cut(s)	531, 1168
BstMBI	GATC	2 cut(s)	528, 1165
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 203, 670, 763, 1177
BstNI	CCWGG	2 cut(s)	137, 1077
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	2 cut(s)	135, 1075
BstSLI	GKGCMC	1 cut(s)	1098
BstV1I	GCAGC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	1165
Bsu36I	CCTNAGG	1 cut(s)	829
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	3 cut(s)	135, 625, 1257
BtgI	CCRYGG	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	6 cut(s)	262, 277, 469, 811, 880, 1125
BtsIMutI	CAGTG	4 cut(s)	645, 1002, 1134, 1140
BveI	ACCTGC	1 cut(s)	750
Cac8I	GCNNGC	3 cut(s)	87, 479, 1288
CciI	TCATGA	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	609
CspCI	CAANNNNNGTGG	2 cut(s)	735, 770
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	5 cut(s)	507, 829, 985, 1105, 1383
DpnI	GATC	2 cut(s)	530, 1167
DpnII	GATC	2 cut(s)	528, 1165
EaeI	YGGCCR	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	1042
Eco32I	GATATC	1 cut(s)	851
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	3 cut(s)	462, 850, 1164
Eco81I	CCTNAGG	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	135, 1075
EcoRV	GATATC	1 cut(s)	851
EcoT14I	CCWWGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	1338
EcoT38I	GRGCYC	1 cut(s)	1042
ErhI	CCWWGG	1 cut(s)	490
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
FblI	GTMKAC	1 cut(s)	990
Fnu4HI	GCNGC	2 cut(s)	30, 142
FokI	GGATG	6 cut(s)	269, 284, 476, 818, 887, 1132
FriOI	GRGCYC	1 cut(s)	1042
Fsp4HI	GCNGC	2 cut(s)	30, 142
FspBI	CTAG	3 cut(s)	18, 150, 627
GluI	GCNGC	2 cut(s)	30, 142
HaeIII	GGCC	3 cut(s)	135, 625, 1257
HapII	CCGG	2 cut(s)	335, 1295
HincII	GTYRAC	1 cut(s)	1125
HindII	GTYRAC	1 cut(s)	1125
HinfI	GANTC	5 cut(s)	46, 419, 470, 583, 1182
HpaII	CCGG	2 cut(s)	335, 1295
HphI	GGTGA	4 cut(s)	87, 523, 1180, 1319
Hpy166II	GTNNAC	4 cut(s)	407, 991, 1125, 1213
Hpy188I	TCNGA	7 cut(s)	51, 521, 655, 848, 869, 1029, 1083
Hpy188III	TCNNGA	3 cut(s)	335, 725, 1295
Hpy8I	GTNNAC	4 cut(s)	407, 991, 1125, 1213
HpyAV	CCTTC	5 cut(s)	437, 691, 796, 864, 892
HpyCH4III	ACNGT	5 cut(s)	649, 917, 1129, 1267, 1283
HpyCH4V	TGCA	8 cut(s)	347, 364, 602, 659, 998, 1238, 1286, 1336
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 203, 670, 763, 1177
HpyF3I	CTNAG	5 cut(s)	507, 829, 985, 1105, 1383
Kpn2I	TCCGGA	2 cut(s)	334, 1294
Kzo9I	GATC	2 cut(s)	528, 1165
LmnI	GCTCC	5 cut(s)	4, 277, 355, 901, 1297
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	4 cut(s)	72, 589, 646, 957
MaeI	CTAG	3 cut(s)	18, 150, 627
MaeIII	GTNAC	4 cut(s)	106, 811, 1186, 1394
MalI	GATC	2 cut(s)	530, 1167
MboI	GATC	2 cut(s)	528, 1165
MboII	GAAGA	4 cut(s)	223, 856, 976, 1157
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	1165
MhlI	GDGCHC	3 cut(s)	782, 1042, 1098
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	7 cut(s)	12, 261, 564, 603, 678, 751, 839
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	479, 1176
MmeI	TCCRAC	2 cut(s)	405, 1052
Mox20I	TGGCCA	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	1338
MroI	TCCGGA	2 cut(s)	334, 1294
MroXI	GAANNNNTTC	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	4 cut(s)	329, 573, 768, 953
MslI	CAYNNNNRTG	2 cut(s)	458, 1005
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	2 cut(s)	115, 144
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	2 cut(s)	335, 1295
MspR9I	CCNGG	2 cut(s)	137, 1077
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	1290
MvaI	CCWGG	2 cut(s)	137, 1077
MwoI	GCNNNNNNNGC	5 cut(s)	141, 203, 670, 763, 1177
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	2 cut(s)	528, 1165
NlaIV	GGNNCC	3 cut(s)	448, 1095, 1167
NmuCI	GTSAC	2 cut(s)	106, 1186
NsiI	ATGCAT	1 cut(s)	1338
NspI	RCATGY	1 cut(s)	615
OliI	CACNNNNGTG	1 cut(s)	1005
PagI	TCATGA	1 cut(s)	724
PctI	GAATGC	1 cut(s)	1290
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	46, 419, 583
PkrI	GCNGC	2 cut(s)	31, 143
PleI	GAGTC	2 cut(s)	478, 1176
PpsI	GAGTC	2 cut(s)	478, 1176
Psp6I	CCWGG	2 cut(s)	135, 1075
PspGI	CCWGG	2 cut(s)	135, 1075
PspN4I	GGNNCC	3 cut(s)	448, 1095, 1167
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	1165
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	2 cut(s)	458, 1005
SaqAI	TTAA	4 cut(s)	329, 573, 768, 953
SatI	GCNGC	2 cut(s)	30, 142
Sau3AI	GATC	2 cut(s)	528, 1165
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	2 cut(s)	479, 1176
ScrFI	CCNGG	2 cut(s)	137, 1077
SduI	GDGCHC	3 cut(s)	782, 1042, 1098
SfaNI	GCATC	4 cut(s)	72, 589, 646, 957
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	458, 1005
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	7 cut(s)	12, 261, 564, 603, 678, 751, 839
SsiI	CCGC	5 cut(s)	30, 113, 195, 764, 1169
SspI	AATATT	2 cut(s)	388, 1230
SspMI	CTAG	3 cut(s)	18, 150, 627
StyD4I	CCNGG	2 cut(s)	135, 1075
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	5 cut(s)	649, 917, 1129, 1267, 1283
TaqI	TCGA	3 cut(s)	299, 527, 962
TasI	AATT	7 cut(s)	12, 261, 564, 603, 678, 751, 839
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	46, 419, 583
Tru1I	TTAA	4 cut(s)	329, 573, 768, 953
Tru9I	TTAA	4 cut(s)	329, 573, 768, 953
TscAI	CASTG	4 cut(s)	652, 1009, 1134, 1147
TseFI	GTSAC	2 cut(s)	106, 1186
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	2 cut(s)	106, 1186
TspDTI	ATGAA	6 cut(s)	273, 411, 911, 1077, 1150, 1209
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	4 cut(s)	652, 1009, 1134, 1147
Vha464I	CTTAAG	1 cut(s)	767
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	990
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	3 cut(s)	18, 150, 627
Zsp2I	ATGCAT	1 cut(s)	1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.