Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006435

Physical Location & Seq

Genomic Coordinates Reverse (-)

37931900 .. 37932586

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCCTCTGATTGCTTTGACAAGTTGCTTGTGCTGCTTTGGAGTATTTGGAAGAATAGGAATGACAAGTTATGGAGAGATCGGTCTCAGTCAGGACCTAGCATTGTGGCCGCTTCGATGGCATGGTTTGAGGAGTATTCCCAGGCCACTCAGGGTCCTGCGGTTATCAATCGACGAGGACCTTCTGGTCGAAAACAGTGGTCTCCTCCAGGGGTTGGTGTTCTAAAGCTGAATGTTGATGGTGCGTTCCTTCCTTCTGTTCAGTATGGAGGCACAGAGGGAGTTCTCAGGACTGAACAAGGGGGTTTTGTAGCTGCTTTTTCCTACAGAGCTAACTTTGTGGTCTCTCCTTTACACGCTGAACTGTTGGCCTTGAAGTATGGCTTAGAATTCCTACAGGCTATACACGTCACGAAGGTGGTCGTGGAGAGTGATTGCTTAGTAGCAATCCGGGCCATTAATTCTTTGAATGGTGACTTGTCTGAGTTAGGTGCACTGATCCATGACATCAAAGGCCTTGTGGGTGCTGTGGGGGATGTTACAGTTGGTTTTACTCCTAGGCAAGCCAATATGGTTGCTCATCGCCTAGCTAGTTATAGTTTTGATTCAAACATCCACCTCGATTGGTTTGTTAATGCTCCAGAATTTGCACTGGATGCCCTCATGTACGATCTTAATCGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

228

Amino Acids

25.03

Weight (kDa)

6.2

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	78 - 199	4e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006435)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	215
AciI	CCGC	2 cut(s)	111, 161
AclWI	GGATC	1 cut(s)	493
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	389, 644
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	376, 469, 609
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	141, 208
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	4 cut(s)	229, 314, 332, 590
AluI	AGCT	4 cut(s)	229, 314, 332, 590
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	3 cut(s)	90, 207, 349
Alw44I	GTGCAC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	5 cut(s)	108, 144, 369, 453, 514
ApaLI	GTGCAC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	34, 314
ApoI	RAATTY	2 cut(s)	389, 644
AseI	ATTAAT	1 cut(s)	459
AspA2I	CCTAGG	1 cut(s)	557
AspS9I	GGNCC	4 cut(s)	95, 155, 179, 453
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	3 cut(s)	95, 155, 179
AvrII	CCTAGG	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	2 cut(s)	21, 301
BccI	CCATC	2 cut(s)	112, 233
BciT130I	CCWGG	2 cut(s)	143, 210
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	3 cut(s)	90, 207, 349
BfaI	CTAG	4 cut(s)	99, 558, 587, 591
BfmI	CTRYAG	2 cut(s)	325, 395
BisI	GCNGC	3 cut(s)	35, 111, 315
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	3 cut(s)	36, 112, 316
Bme1390I	CCNGG	3 cut(s)	143, 210, 452
Bme18I	GGWCC	3 cut(s)	95, 155, 179
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	4 cut(s)	95, 155, 179, 453
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	3 cut(s)	143, 210, 452
BmsI	GCATC	1 cut(s)	646
BpmI	CTGGAG	2 cut(s)	192, 624
BpuMI	CCSGG	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	675
BsaI	GGTCTC	3 cut(s)	90, 207, 349
BsaJI	CCNNGG	3 cut(s)	141, 209, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	675
BseBI	CCWGG	2 cut(s)	143, 210
BseDI	CCNNGG	3 cut(s)	141, 209, 557
BseGI	GGATG	3 cut(s)	541, 612, 661
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	4 cut(s)	101, 164, 301, 474
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	2 cut(s)	146, 195
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	21, 301
BshFI	GGCC	5 cut(s)	110, 146, 371, 455, 516
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	3 cut(s)	90, 207, 349
BsnI	GGCC	5 cut(s)	110, 146, 371, 455, 516
Bso31I	GGTCTC	3 cut(s)	90, 207, 349
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	79, 498, 670
BspACI	CCGC	2 cut(s)	111, 161
BspANI	GGCC	5 cut(s)	110, 146, 371, 455, 516
BspCNI	CTCAG	4 cut(s)	100, 163, 300, 475
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	493
BspTNI	GGTCTC	3 cut(s)	90, 207, 349
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	3 cut(s)	141, 209, 557
BssMI	GATC	3 cut(s)	79, 498, 670
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	143, 210
Bst4CI	ACNGT	3 cut(s)	198, 366, 544
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	6 cut(s)	87, 150, 287, 385, 439, 483
BstF5I	GGATG	3 cut(s)	541, 612, 661
BstKTI	GATC	3 cut(s)	82, 501, 673
BstMAI	GTCTC	3 cut(s)	90, 207, 349
BstMBI	GATC	3 cut(s)	79, 498, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 119, 452, 656
BstNI	CCWGG	2 cut(s)	143, 210
BstSCI	CCNGG	3 cut(s)	141, 208, 450
BstSFI	CTRYAG	2 cut(s)	325, 395
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	2 cut(s)	21, 301
BsuRI	GGCC	5 cut(s)	110, 146, 371, 455, 516
BtgZI	GCGATG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	3 cut(s)	541, 612, 661
BtsIMutI	CAGTG	3 cut(s)	203, 494, 650
Cac8I	GCNNGC	1 cut(s)	564
Cfr13I	GGNCC	4 cut(s)	95, 155, 179, 453
Csp6I	GTAC	1 cut(s)	667
CspCI	CAANNNNNGTGG	2 cut(s)	605, 640
CviAII	CATG	3 cut(s)	123, 503, 664
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	6 cut(s)	87, 150, 287, 385, 439, 483
DpnI	GATC	3 cut(s)	81, 500, 672
DpnII	GATC	3 cut(s)	79, 498, 670
DrdI	GACNNNNNNGTC	1 cut(s)	186
DseDI	GACNNNNNNGTC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	557
Eco147I	AGGCCT	1 cut(s)	516
Eco31I	GGTCTC	3 cut(s)	90, 207, 349
Eco47I	GGWCC	3 cut(s)	95, 155, 179
EcoO109I	RGGNCCY	3 cut(s)	95, 155, 179
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	141, 208
EcoT14I	CCWWGG	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	3 cut(s)	126, 506, 667
FaiI	YATR	9 cut(s)	73, 124, 267, 381, 404, 504, 572, 597, 665
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	3 cut(s)	122, 502, 663
Fnu4HI	GCNGC	3 cut(s)	35, 111, 315
FokI	GGATG	3 cut(s)	548, 599, 668
Fsp4HI	GCNGC	3 cut(s)	35, 111, 315
FspBI	CTAG	4 cut(s)	99, 558, 587, 591
GluI	GCNGC	3 cut(s)	35, 111, 315
GsuI	CTGGAG	2 cut(s)	192, 624
HaeIII	GGCC	5 cut(s)	110, 146, 371, 455, 516
HapII	CCGG	1 cut(s)	451
Hin1II	CATG	3 cut(s)	126, 506, 667
HinfI	GANTC	1 cut(s)	605
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	2 cut(s)	10, 484
Hpy188III	TCNNGA	4 cut(s)	93, 289, 412, 641
Hpy8I	GTNNAC	1 cut(s)	494
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	4 cut(s)	192, 260, 264, 409
HpyCH4III	ACNGT	3 cut(s)	198, 366, 544
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	494, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 119, 452, 656
HpyF3I	CTNAG	6 cut(s)	87, 150, 287, 385, 439, 483
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	126, 506, 667
Kzo9I	GATC	3 cut(s)	79, 498, 670
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	2 cut(s)	21, 301
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	4 cut(s)	99, 558, 587, 591
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	409, 473, 538
MalI	GATC	3 cut(s)	81, 500, 672
MboI	GATC	3 cut(s)	79, 498, 670
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	3 cut(s)	389, 460, 644
MnlI	CCTC	8 cut(s)	16, 124, 170, 216, 263, 271, 629, 671
MseI	TTAA	3 cut(s)	459, 633, 675
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	3 cut(s)	143, 210, 452
MvaI	CCWGG	2 cut(s)	143, 210
MwoI	GCNNNNNNNGC	4 cut(s)	34, 119, 452, 656
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	3 cut(s)	79, 498, 670
NlaIII	CATG	3 cut(s)	126, 506, 667
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	409, 473
OliI	CACNNNNGTG	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	605
PflMI	CCANNNNNTGG	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	36, 112, 316
PpuMI	RGGWCCY	3 cut(s)	95, 155, 179
PshBI	ATTAAT	1 cut(s)	459
Psp5II	RGGWCCY	3 cut(s)	95, 155, 179
Psp6I	CCWGG	2 cut(s)	141, 208
PspGI	CCWGG	2 cut(s)	141, 208
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	4 cut(s)	95, 155, 179, 453
PspPPI	RGGWCCY	3 cut(s)	95, 155, 179
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	459, 633, 675
SatI	GCNGC	3 cut(s)	35, 111, 315
Sau3AI	GATC	3 cut(s)	79, 498, 670
Sau96I	GGNCC	4 cut(s)	95, 155, 179, 453
ScrFI	CCNGG	3 cut(s)	143, 210, 452
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	2 cut(s)	325, 395
SinI	GGWCC	3 cut(s)	95, 155, 179
SmiMI	CAYNNNNRTG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	389, 460, 644
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	2 cut(s)	111, 161
SspMI	CTAG	4 cut(s)	99, 558, 587, 591
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	141, 208, 450
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	3 cut(s)	198, 366, 544
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	4 cut(s)	116, 172, 190, 621
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	389, 460, 644
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	3 cut(s)	459, 633, 675
Tru9I	TTAA	3 cut(s)	459, 633, 675
TscAI	CASTG	3 cut(s)	203, 501, 657
TseFI	GTSAC	2 cut(s)	409, 473
TseI	GCWGC	2 cut(s)	34, 314
Tsp45I	GTSAC	2 cut(s)	409, 473
TspRI	CASTG	3 cut(s)	203, 501, 657
Van91I	CCANNNNNTGG	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	492
VpaK11BI	GGWCC	3 cut(s)	95, 155, 179
VspI	ATTAAT	1 cut(s)	459
XapI	RAATTY	2 cut(s)	389, 644
XmaJI	CCTAGG	1 cut(s)	557
XspI	CTAG	4 cut(s)	99, 558, 587, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.