Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 53 - 125 | 6.5e-21 | Transposase-associated domain |
| Transposase_21 | PF02992 | 338 - 498 | 1.3e-71 | Transposase family tnp2 |
| Transposase_24 | PF03004 | 501 - 628 | 5.8e-13 | Plant transposase (Ptta/En/Spm family) |
| DUF8039 | PF26133 | 842 - 921 | 8.9e-13 | Domain of unknown function (DUF8039) |
| Peptidase_C48 | PF02902 | 1065 - 1168 | 3.8e-09 | Ulp1 protease family, C-terminal catalytic domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3093 |
| Acc36I | ACCTGC | 2 cut(s) | 730, 913 |
| Acc65I | GGTACC | 1 cut(s) | 3066 |
| AccB1I | GGYRCC | 2 cut(s) | 2869, 3066 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1079, 1412, 1683, 1844 |
| AccBSI | CCGCTC | 1 cut(s) | 2068 |
| AccII | CGCG | 2 cut(s) | 2643, 2660 |
| AccIII | TCCGGA | 1 cut(s) | 3268 |
| AciI | CCGC | 5 cut(s) | 1528, 1858, 2068, 2658, 3299 |
| AclWI | GGATC | 5 cut(s) | 96, 324, 2588, 2601, 3260 |
| AcoI | YGGCCR | 2 cut(s) | 1070, 2152 |
| AcsI | RAATTY | 7 cut(s) | 64, 542, 695, 1514, 2247, 2849, 3409 |
| AcuI | CTGAAG | 3 cut(s) | 131, 1818, 2982 |
| AdeI | CACNNNGTG | 1 cut(s) | 1683 |
| AfaI | GTAC | 7 cut(s) | 384, 477, 734, 903, 923, 3059, 3068 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 851, 1079, 1412, 1683, 1844 |
| AflII | CTTAAG | 1 cut(s) | 1144 |
| AflIII | ACRYGT | 2 cut(s) | 848, 3498 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2490 |
| AjnI | CCWGG | 3 cut(s) | 583, 1545, 3205 |
| AleI | CACNNNNGTG | 1 cut(s) | 3605 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 21, 53, 2991, 3023 |
| Alw26I | GTCTC | 2 cut(s) | 237, 413 |
| AlwI | GGATC | 5 cut(s) | 96, 324, 2588, 2601, 3260 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1040 |
| Ama87I | CYCGRG | 1 cut(s) | 3235 |
| Aor13HI | TCCGGA | 1 cut(s) | 3268 |
| ApaI | GGGCCC | 2 cut(s) | 1253, 3172 |
| ApeKI | GCWGC | 2 cut(s) | 662, 1578 |
| ApoI | RAATTY | 7 cut(s) | 64, 542, 695, 1514, 2247, 2849, 3409 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1810, 1842 |
| Asp718I | GGTACC | 1 cut(s) | 3066 |
| AspA2I | CCTAGG | 1 cut(s) | 938 |
| AspLEI | GCGC | 4 cut(s) | 1578, 2643, 2662, 3284 |
| AspS9I | GGNCC | 7 cut(s) | 1167, 1249, 1250, 1674, 3168, 3169, 3295 |
| AsuC2I | CCSGG | 1 cut(s) | 1263 |
| AsuHPI | GGTGA | 3 cut(s) | 1339, 2924, 3251 |
| AvaI | CYCGRG | 1 cut(s) | 3235 |
| AvaII | GGWCC | 1 cut(s) | 3295 |
| AvrII | CCTAGG | 1 cut(s) | 938 |
| AxyI | CCTNAGG | 1 cut(s) | 1370 |
| BaeGI | GKGCMC | 2 cut(s) | 1253, 3172 |
| BalI | TGGCCA | 2 cut(s) | 1072, 2154 |
| BamHI | GGATCC | 1 cut(s) | 2593 |
| BanI | GGYRCC | 2 cut(s) | 2869, 3066 |
| BanII | GRGCYC | 2 cut(s) | 1253, 3172 |
| BbsI | GAAGAC | 1 cut(s) | 752 |
| BbvCI | CCTCAGC | 1 cut(s) | 2520 |
| BbvI | GCAGC | 2 cut(s) | 674, 1590 |
| BccI | CCATC | 8 cut(s) | 145, 1007, 1115, 1703, 2231, 2624, 2881, 2924 |
| BceAI | ACGGC | 2 cut(s) | 1118, 1712 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 704, 738 |
| BciT130I | CCWGG | 3 cut(s) | 585, 1547, 3207 |
| BciVI | GTATCC | 3 cut(s) | 116, 1602, 3446 |
| BclI | TGATCA | 3 cut(s) | 3076, 3241, 3562 |
| BcnI | CCSGG | 1 cut(s) | 1263 |
| BcoDI | GTCTC | 2 cut(s) | 237, 413 |
| BfaI | CTAG | 9 cut(s) | 200, 240, 861, 939, 1779, 2009, 2624, 2756, 3435 |
| BfmI | CTRYAG | 2 cut(s) | 117, 1032 |
| BfoI | RGCGCY | 1 cut(s) | 3285 |
| BfrI | CTTAAG | 1 cut(s) | 1144 |
| BfuAI | ACCTGC | 2 cut(s) | 730, 913 |
| BfuI | GTATCC | 3 cut(s) | 116, 1602, 3446 |
| BisI | GCNGC | 3 cut(s) | 663, 1579, 2658 |
| BlnI | CCTAGG | 1 cut(s) | 938 |
| BlsI | GCNGC | 3 cut(s) | 664, 1580, 2659 |
| Bme1390I | CCNGG | 4 cut(s) | 585, 1263, 1547, 3207 |
| Bme18I | GGWCC | 1 cut(s) | 3295 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2490 |
| BmeT110I | CYCGRG | 1 cut(s) | 3235 |
| BmgT120I | GGNCC | 7 cut(s) | 1167, 1249, 1250, 1674, 3168, 3169, 3295 |
| BmiI | GGNNCC | 8 cut(s) | 1251, 2448, 2595, 2871, 2958, 3068, 3170, 3297 |
| BmrFI | CCNGG | 4 cut(s) | 585, 1263, 1547, 3207 |
| BmsI | GCATC | 8 cut(s) | 156, 553, 649, 1036, 1218, 1333, 2156, 2908 |
| BpiI | GAAGAC | 1 cut(s) | 752 |
| BpmI | CTGGAG | 1 cut(s) | 1821 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2520 |
| BpuEI | CTTGAG | 4 cut(s) | 2152, 2175, 2684, 2759 |
| BpuMI | CCSGG | 1 cut(s) | 1263 |
| BsaAI | YACGTR | 1 cut(s) | 2476 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1482, 3335, 3561 |
| BsaI | GGTCTC | 1 cut(s) | 237 |
| BsaJI | CCNNGG | 6 cut(s) | 583, 938, 1199, 2155, 2349, 2442 |
| BsaWI | WCCGGW | 2 cut(s) | 1646, 3268 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1622, 1652, 1860, 1890, 2072, 2102 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 851, 1079, 1412, 1683, 1844 |
| Bse1I | ACTGG | 3 cut(s) | 680, 3021, 3043 |
| Bse21I | CCTNAGG | 1 cut(s) | 1370 |
| Bse3DI | GCAATG | 1 cut(s) | 2274 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1482, 3335, 3561 |
| BseAI | TCCGGA | 1 cut(s) | 3268 |
| BseBI | CCWGG | 3 cut(s) | 585, 1547, 3207 |
| BseDI | CCNNGG | 6 cut(s) | 583, 938, 1199, 2155, 2349, 2442 |
| BseJI | GATNNNNATC | 3 cut(s) | 1482, 3335, 3561 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 851, 1079, 1412, 1683, 1844 |
| BseMI | GCAATG | 1 cut(s) | 2274 |
| BseMII | CTCAG | 3 cut(s) | 522, 2403, 2511 |
| BseNI | ACTGG | 3 cut(s) | 680, 3021, 3043 |
| BseRI | GAGGAG | 8 cut(s) | 1742, 1982, 2003, 2027, 2474, 2477, 2681, 3541 |
| BseSI | GKGCMC | 2 cut(s) | 1253, 3172 |
| BseXI | GCAGC | 2 cut(s) | 674, 1590 |
| BsgI | GTGCAG | 1 cut(s) | 1970 |
| Bsh1236I | CGCG | 2 cut(s) | 2643, 2660 |
| BshNI | GGYRCC | 2 cut(s) | 2869, 3066 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3235 |
| BsiSI | CCGG | 5 cut(s) | 1262, 1647, 2450, 3269, 3388 |
| BslFI | GGGAC | 2 cut(s) | 1591, 1846 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 851, 1079, 1412, 1683, 1844 |
| BsmAI | GTCTC | 2 cut(s) | 237, 413 |
| BsmFI | GGGAC | 2 cut(s) | 1591, 1846 |
| BsmI | GAATGC | 4 cut(s) | 2534, 2591, 2921, 3420 |
| Bso31I | GGTCTC | 1 cut(s) | 237 |
| BsoBI | CYCGRG | 1 cut(s) | 3235 |
| Bsp120I | GGGCCC | 2 cut(s) | 1249, 3168 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1253, 3172 |
| Bsp13I | TCCGGA | 1 cut(s) | 3268 |
| Bsp143I | GATC | 7 cut(s) | 88, 316, 2593, 3076, 3241, 3265, 3562 |
| Bsp19I | CCATGG | 1 cut(s) | 1199 |
| BspACI | CCGC | 5 cut(s) | 1528, 1858, 2068, 2658, 3299 |
| BspCNI | CTCAG | 3 cut(s) | 523, 2404, 2512 |
| BspEI | TCCGGA | 1 cut(s) | 3268 |
| BspFNI | CGCG | 2 cut(s) | 2643, 2660 |
| BspLI | GGNNCC | 8 cut(s) | 1251, 2448, 2595, 2871, 2958, 3068, 3170, 3297 |
| BspMAI | CTGCAG | 1 cut(s) | 1036 |
| BspMI | ACCTGC | 2 cut(s) | 730, 913 |
| BspPI | GGATC | 5 cut(s) | 96, 324, 2588, 2601, 3260 |
| BspT107I | GGYRCC | 2 cut(s) | 2869, 3066 |
| BspTI | CTTAAG | 1 cut(s) | 1144 |
| BspTNI | GGTCTC | 1 cut(s) | 237 |
| BsrBI | CCGCTC | 1 cut(s) | 2068 |
| BsrDI | GCAATG | 1 cut(s) | 2274 |
| BsrI | ACTGG | 3 cut(s) | 680, 3021, 3043 |
| BssECI | CCNNGG | 6 cut(s) | 583, 938, 1199, 2155, 2349, 2442 |
| BssMI | GATC | 7 cut(s) | 88, 316, 2593, 3076, 3241, 3265, 3562 |
| BssT1I | CCWWGG | 5 cut(s) | 938, 1199, 2155, 2349, 2442 |
| Bst2UI | CCWGG | 3 cut(s) | 585, 1547, 3207 |
| Bst6I | CTCTTC | 5 cut(s) | 971, 1208, 1760, 1846, 2826 |
| BstAFI | CTTAAG | 1 cut(s) | 1144 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1040 |
| BstBAI | YACGTR | 1 cut(s) | 2476 |
| BstC8I | GCNNGC | 9 cut(s) | 171, 790, 993, 1107, 2070, 2721, 3022, 3192, 3418 |
| BstDEI | CTNAG | 5 cut(s) | 41, 531, 1370, 2412, 2520 |
| BstDSI | CCRYGG | 1 cut(s) | 1199 |
| BstEII | GGTNACC | 2 cut(s) | 1180, 1415 |
| BstFNI | CGCG | 2 cut(s) | 2643, 2660 |
| BstH2I | RGCGCY | 1 cut(s) | 3285 |
| BstHHI | GCGC | 4 cut(s) | 1578, 2643, 2662, 3284 |
| BstKTI | GATC | 7 cut(s) | 91, 319, 2596, 3079, 3244, 3268, 3565 |
| BstMAI | GTCTC | 2 cut(s) | 237, 413 |
| BstMBI | GATC | 7 cut(s) | 88, 316, 2593, 3076, 3241, 3265, 3562 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1040, 1561, 2090, 2640, 2867 |
| BstNI | CCWGG | 3 cut(s) | 585, 1547, 3207 |
| BstNSI | RCATGY | 6 cut(s) | 173, 852, 995, 1455, 2147, 3502 |
| BstPI | GGTNACC | 2 cut(s) | 1180, 1415 |
| BstSCI | CCNGG | 4 cut(s) | 583, 1261, 1545, 3205 |
| BstSFI | CTRYAG | 2 cut(s) | 117, 1032 |
| BstSLI | GKGCMC | 2 cut(s) | 1253, 3172 |
| BstUI | CGCG | 2 cut(s) | 2643, 2660 |
| BstV1I | GCAGC | 2 cut(s) | 674, 1590 |
| BstV2I | GAAGAC | 1 cut(s) | 752 |
| BstX2I | RGATCY | 2 cut(s) | 88, 2593 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2581 |
| BstYI | RGATCY | 2 cut(s) | 88, 2593 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1370 |
| BsuI | GTATCC | 3 cut(s) | 116, 1602, 3446 |
| BtgI | CCRYGG | 1 cut(s) | 1199 |
| BtsIMutI | CAGTG | 4 cut(s) | 2409, 2574, 2718, 3503 |
| BveI | ACCTGC | 2 cut(s) | 730, 913 |
| Cac8I | GCNNGC | 9 cut(s) | 171, 790, 993, 1107, 2070, 2721, 3022, 3192, 3418 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1040 |
| CfoI | GCGC | 4 cut(s) | 1578, 2643, 2662, 3284 |
| Cfr13I | GGNCC | 7 cut(s) | 1167, 1249, 1250, 1674, 3168, 3169, 3295 |
| CseI | GACGC | 3 cut(s) | 1032, 1544, 3318 |
| Csp6I | GTAC | 7 cut(s) | 383, 476, 733, 902, 922, 3058, 3067 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2214, 2249, 3430, 3465 |
| CviQI | GTAC | 7 cut(s) | 383, 476, 733, 902, 922, 3058, 3067 |
| DdeI | CTNAG | 5 cut(s) | 41, 531, 1370, 2412, 2520 |
| DpnI | GATC | 7 cut(s) | 90, 318, 2595, 3078, 3243, 3267, 3564 |
| DpnII | GATC | 7 cut(s) | 88, 316, 2593, 3076, 3241, 3265, 3562 |
| DraIII | CACNNNGTG | 1 cut(s) | 1683 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2490 |
| EaeI | YGGCCR | 2 cut(s) | 1070, 2152 |
| Eam1104I | CTCTTC | 5 cut(s) | 971, 1208, 1760, 1846, 2826 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2490 |
| EarI | CTCTTC | 5 cut(s) | 971, 1208, 1760, 1846, 2826 |
| Eco130I | CCWWGG | 5 cut(s) | 938, 1199, 2155, 2349, 2442 |
| Eco147I | AGGCCT | 1 cut(s) | 1538 |
| Eco24I | GRGCYC | 2 cut(s) | 1253, 3172 |
| Eco31I | GGTCTC | 1 cut(s) | 237 |
| Eco32I | GATATC | 2 cut(s) | 1245, 3481 |
| Eco47I | GGWCC | 1 cut(s) | 3295 |
| Eco57I | CTGAAG | 3 cut(s) | 131, 1818, 2982 |
| Eco81I | CCTNAGG | 1 cut(s) | 1370 |
| Eco88I | CYCGRG | 1 cut(s) | 3235 |
| Eco91I | GGTNACC | 2 cut(s) | 1180, 1415 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1250, 3168 |
| EcoO65I | GGTNACC | 2 cut(s) | 1180, 1415 |
| EcoRI | GAATTC | 1 cut(s) | 542 |
| EcoRII | CCWGG | 3 cut(s) | 583, 1545, 3205 |
| EcoRV | GATATC | 2 cut(s) | 1245, 3481 |
| EcoT14I | CCWWGG | 5 cut(s) | 938, 1199, 2155, 2349, 2442 |
| EcoT22I | ATGCAT | 5 cut(s) | 171, 1453, 2149, 2292, 2923 |
| EcoT38I | GRGCYC | 2 cut(s) | 1253, 3172 |
| ErhI | CCWWGG | 5 cut(s) | 938, 1199, 2155, 2349, 2442 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 305, 337, 1001, 1033, 3174, 3206 |
| FaqI | GGGAC | 2 cut(s) | 1591, 1846 |
| FauI | CCCGC | 3 cut(s) | 1851, 2061, 3306 |
| FauNDI | CATATG | 1 cut(s) | 3604 |
| FbaI | TGATCA | 3 cut(s) | 3076, 3241, 3562 |
| Fnu4HI | GCNGC | 3 cut(s) | 663, 1579, 2658 |
| FriOI | GRGCYC | 2 cut(s) | 1253, 3172 |
| Fsp4HI | GCNGC | 3 cut(s) | 663, 1579, 2658 |
| FspBI | CTAG | 9 cut(s) | 200, 240, 861, 939, 1779, 2009, 2624, 2756, 3435 |
| GlaI | GCGC | 4 cut(s) | 1577, 2642, 2661, 3283 |
| GluI | GCNGC | 3 cut(s) | 663, 1579, 2658 |
| GsuI | CTGGAG | 1 cut(s) | 1821 |
| HaeII | RGCGCY | 1 cut(s) | 3285 |
| HapII | CCGG | 5 cut(s) | 1262, 1647, 2450, 3269, 3388 |
| HgaI | GACGC | 3 cut(s) | 1032, 1544, 3318 |
| HhaI | GCGC | 4 cut(s) | 1578, 2643, 2662, 3284 |
| Hin6I | GCGC | 4 cut(s) | 1576, 2641, 2660, 3282 |
| HinP1I | GCGC | 4 cut(s) | 1576, 2641, 2660, 3282 |
| HincII | GTYRAC | 3 cut(s) | 2395, 3121, 3598 |
| HindII | GTYRAC | 3 cut(s) | 2395, 3121, 3598 |
| HpaII | CCGG | 5 cut(s) | 1262, 1647, 2450, 3269, 3388 |
| HphI | GGTGA | 3 cut(s) | 1339, 2924, 3251 |
| Hpy166II | GTNNAC | 8 cut(s) | 733, 1282, 1339, 2395, 2495, 3058, 3121, 3598 |
| Hpy188III | TCNNGA | 9 cut(s) | 92, 1387, 1425, 1559, 1816, 1838, 2192, 2776, 3269 |
| Hpy8I | GTNNAC | 8 cut(s) | 733, 1282, 1339, 2395, 2495, 3058, 3121, 3598 |
| Hpy99I | CGWCG | 1 cut(s) | 1560 |
| HpyCH4IV | ACGT | 4 cut(s) | 342, 1909, 2338, 2475 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1040, 1561, 2090, 2640, 2867 |
| HpyF3I | CTNAG | 5 cut(s) | 41, 531, 1370, 2412, 2520 |
| HpySE526I | ACGT | 4 cut(s) | 342, 1909, 2338, 2475 |
| HspAI | GCGC | 4 cut(s) | 1576, 2641, 2660, 3282 |
| Kpn2I | TCCGGA | 1 cut(s) | 3268 |
| KpnI | GGTACC | 1 cut(s) | 3070 |
| Ksp22I | TGATCA | 3 cut(s) | 3076, 3241, 3562 |
| Kzo9I | GATC | 7 cut(s) | 88, 316, 2593, 3076, 3241, 3265, 3562 |
| LmnI | GCTCC | 5 cut(s) | 2212, 2253, 2351, 2446, 2956 |
| Lsp1109I | GCAGC | 2 cut(s) | 674, 1590 |
| LweI | GCATC | 8 cut(s) | 156, 553, 649, 1036, 1218, 1333, 2156, 2908 |
| MaeI | CTAG | 9 cut(s) | 200, 240, 861, 939, 1779, 2009, 2624, 2756, 3435 |
| MaeII | ACGT | 4 cut(s) | 342, 1909, 2338, 2475 |
| MaeIII | GTNAC | 6 cut(s) | 1180, 1415, 1655, 1876, 2407, 3501 |
| MalI | GATC | 7 cut(s) | 90, 318, 2595, 3078, 3243, 3267, 3564 |
| MbiI | CCGCTC | 1 cut(s) | 2068 |
| MboI | GATC | 7 cut(s) | 88, 316, 2593, 3076, 3241, 3265, 3562 |
| MfeI | CAATTG | 1 cut(s) | 963 |
| MflI | RGATCY | 2 cut(s) | 88, 2593 |
| MhlI | GDGCHC | 2 cut(s) | 1253, 3172 |
| MlsI | TGGCCA | 2 cut(s) | 1072, 2154 |
| MluNI | TGGCCA | 2 cut(s) | 1072, 2154 |
| MlyI | GAGTC | 3 cut(s) | 1739, 1828, 2831 |
| MmeI | TCCRAC | 5 cut(s) | 480, 696, 1608, 2193, 2310 |
| Mox20I | TGGCCA | 2 cut(s) | 1072, 2154 |
| Mph1103I | ATGCAT | 5 cut(s) | 171, 1453, 2149, 2292, 2923 |
| MroI | TCCGGA | 1 cut(s) | 3268 |
| MscI | TGGCCA | 2 cut(s) | 1072, 2154 |
| MseI | TTAA | 8 cut(s) | 983, 1019, 1145, 1295, 1350, 2316, 3035, 3231 |
| MslI | CAYNNNNRTG | 4 cut(s) | 605, 2579, 3053, 3605 |
| Msp20I | TGGCCA | 2 cut(s) | 1072, 2154 |
| MspCI | CTTAAG | 1 cut(s) | 1144 |
| MspI | CCGG | 5 cut(s) | 1262, 1647, 2450, 3269, 3388 |
| MspR9I | CCNGG | 4 cut(s) | 585, 1263, 1547, 3207 |
| MunI | CAATTG | 1 cut(s) | 963 |
| Mva1269I | GAATGC | 4 cut(s) | 2534, 2591, 2921, 3420 |
| MvaI | CCWGG | 3 cut(s) | 585, 1547, 3207 |
| MvnI | CGCG | 2 cut(s) | 2643, 2660 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1040, 1561, 2090, 2640, 2867 |
| NciI | CCSGG | 1 cut(s) | 1263 |
| NcoI | CCATGG | 1 cut(s) | 1199 |
| NdeI | CATATG | 1 cut(s) | 3604 |
| NdeII | GATC | 7 cut(s) | 88, 316, 2593, 3076, 3241, 3265, 3562 |
| NlaIV | GGNNCC | 8 cut(s) | 1251, 2448, 2595, 2871, 2958, 3068, 3170, 3297 |
| NmuCI | GTSAC | 4 cut(s) | 1655, 1876, 2407, 3501 |
| NsiI | ATGCAT | 5 cut(s) | 171, 1453, 2149, 2292, 2923 |
| NspI | RCATGY | 6 cut(s) | 173, 852, 995, 1455, 2147, 3502 |
| OliI | CACNNNNGTG | 1 cut(s) | 3605 |
| PaeI | GCATGC | 2 cut(s) | 173, 995 |
| PceI | AGGCCT | 1 cut(s) | 1538 |
| PciI | ACATGT | 2 cut(s) | 848, 3498 |
| PctI | GAATGC | 4 cut(s) | 2534, 2591, 2921, 3420 |
| PfeI | GAWTC | 9 cut(s) | 30, 76, 392, 434, 440, 934, 1037, 2039, 2195 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1079, 1412, 1683, 1844 |
| PfoI | TCCNGGA | 1 cut(s) | 1545 |
| PkrI | GCNGC | 3 cut(s) | 664, 1580, 2659 |
| PleI | GAGTC | 3 cut(s) | 1738, 1828, 2831 |
| PpsI | GAGTC | 3 cut(s) | 1738, 1828, 2831 |
| Ppu21I | YACGTR | 1 cut(s) | 2476 |
| PscI | ACATGT | 2 cut(s) | 848, 3498 |
| PsiI | TTATAA | 1 cut(s) | 3093 |
| Psp6I | CCWGG | 3 cut(s) | 583, 1545, 3205 |
| PspEI | GGTNACC | 2 cut(s) | 1180, 1415 |
| PspGI | CCWGG | 3 cut(s) | 583, 1545, 3205 |
| PspN4I | GGNNCC | 8 cut(s) | 1251, 2448, 2595, 2871, 2958, 3068, 3170, 3297 |
| PspOMI | GGGCCC | 2 cut(s) | 1249, 3168 |
| PspPI | GGNCC | 7 cut(s) | 1167, 1249, 1250, 1674, 3168, 3169, 3295 |
| PstI | CTGCAG | 1 cut(s) | 1036 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1040 |
| PsuI | RGATCY | 2 cut(s) | 88, 2593 |
| RsaI | GTAC | 7 cut(s) | 384, 477, 734, 903, 923, 3059, 3068 |
| RsaNI | GTAC | 7 cut(s) | 383, 476, 733, 902, 922, 3058, 3067 |
| RseI | CAYNNNNRTG | 4 cut(s) | 605, 2579, 3053, 3605 |
| SaqAI | TTAA | 8 cut(s) | 983, 1019, 1145, 1295, 1350, 2316, 3035, 3231 |
| SatI | GCNGC | 3 cut(s) | 663, 1579, 2658 |
| Sau3AI | GATC | 7 cut(s) | 88, 316, 2593, 3076, 3241, 3265, 3562 |
| Sau96I | GGNCC | 7 cut(s) | 1167, 1249, 1250, 1674, 3168, 3169, 3295 |
| SchI | GAGTC | 3 cut(s) | 1739, 1828, 2831 |
| ScrFI | CCNGG | 4 cut(s) | 585, 1263, 1547, 3207 |
| SduI | GDGCHC | 2 cut(s) | 1253, 3172 |
| SfaNI | GCATC | 8 cut(s) | 156, 553, 649, 1036, 1218, 1333, 2156, 2908 |
| SfcI | CTRYAG | 2 cut(s) | 117, 1032 |
| SinI | GGWCC | 1 cut(s) | 3295 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 605, 2579, 3053, 3605 |
| SmlI | CTYRAG | 5 cut(s) | 1144, 2167, 2190, 2663, 2774 |
| SmoI | CTYRAG | 5 cut(s) | 1144, 2167, 2190, 2663, 2774 |
| SphI | GCATGC | 2 cut(s) | 173, 995 |
| SseBI | AGGCCT | 1 cut(s) | 1538 |
| SsiI | CCGC | 5 cut(s) | 1528, 1858, 2068, 2658, 3299 |
| SspI | AATATT | 1 cut(s) | 1959 |
| SspMI | CTAG | 9 cut(s) | 200, 240, 861, 939, 1779, 2009, 2624, 2756, 3435 |
| StuI | AGGCCT | 1 cut(s) | 1538 |
| StyD4I | CCNGG | 4 cut(s) | 583, 1261, 1545, 3205 |
| StyI | CCWWGG | 5 cut(s) | 938, 1199, 2155, 2349, 2442 |
| TaiI | ACGT | 4 cut(s) | 345, 1912, 2341, 2478 |
| TaqI | TCGA | 6 cut(s) | 33, 61, 93, 104, 974, 2042 |
| TatI | WGTACW | 1 cut(s) | 475 |
| TauI | GCSGC | 1 cut(s) | 2660 |
| TfiI | GAWTC | 9 cut(s) | 30, 76, 392, 434, 440, 934, 1037, 2039, 2195 |
| Tru1I | TTAA | 8 cut(s) | 983, 1019, 1145, 1295, 1350, 2316, 3035, 3231 |
| Tru9I | TTAA | 8 cut(s) | 983, 1019, 1145, 1295, 1350, 2316, 3035, 3231 |
| TscAI | CASTG | 4 cut(s) | 2416, 2581, 2718, 3510 |
| TseFI | GTSAC | 4 cut(s) | 1655, 1876, 2407, 3501 |
| TseI | GCWGC | 2 cut(s) | 662, 1578 |
| Tsp45I | GTSAC | 4 cut(s) | 1655, 1876, 2407, 3501 |
| TspGWI | ACGGA | 2 cut(s) | 2199, 2317 |
| TspRI | CASTG | 4 cut(s) | 2416, 2581, 2718, 3510 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1079, 1412, 1683, 1844 |
| Vha464I | CTTAAG | 1 cut(s) | 1144 |
| VpaK11BI | GGWCC | 1 cut(s) | 3295 |
| XapI | RAATTY | 7 cut(s) | 64, 542, 695, 1514, 2247, 2849, 3409 |
| XceI | RCATGY | 6 cut(s) | 173, 852, 995, 1455, 2147, 3502 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2609 |
| XmaJI | CCTAGG | 1 cut(s) | 938 |
| XspI | CTAG | 9 cut(s) | 200, 240, 861, 939, 1779, 2009, 2624, 2756, 3435 |
| Zsp2I | ATGCAT | 5 cut(s) | 171, 1453, 2149, 2292, 2923 |