Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006435

Physical Location & Seq

Genomic Coordinates Reverse (-)

26880583 .. 26914410

Gene Structure 33828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0256700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1890 bp

ATGGCCACTGTCTGCCCTCCCCACACAATCTCACCCCCTGCCATTGTTTCTTCTTCTCCAGTCCGATGCTCTCACTCCCAATCGCAGCTCCTATTCCGTTCAAATCTCCCGAACCGCCGCCACCACAGCCCGAGCCTCCCGATTTCGGCTCCCAATCTCCGCGCCGCTACCAAAGGACGAGTTCTCTGCTCGCAAAACCCTAACCCTGCCCCCACGCGCCGCCCCGACTACGTCCCCAACCGCATCTCCGACCCGAACTATGTCCGCATCCTCGACACCACGCTCCGCGACGGCGAGCAGTCCCCCGGCGCCTCGCTCACCTCCAAGGAGAAGCTCGACATTGCGCGCCAGCTGGCCAAGCTCGGCGTCGACATAATCGACGCCGGGTTCCCGGCGGCATCGAAGGACGACTTCGTAGCCGTGAAGATGATCGCGAAAGAGGTCGGGAATTTTGTGGATAAAGACGGTTATGTCCCTGTGATCTGTGGGCTGTCCAGGTGCAATGAGAAGGATATTAAGACGGCATGGGAGGCGGTCAAGTATGCAAAGAGGCCGAGGATTCAGACTTTCATTGCTACCAGTCCGATTCATATGGAGCATAAGCTGAGGAAGACGAAGGAGCAGGTGATCGAAATGGCGAGGAGTATGGTGAGCTATGCTAGGAGCTTGGGTTGCCAAGATGTCCAGTTTAGCCCGGAAGATGCCGGCAGATCTGAGAAGGAATTTCTATATCAGATTTTAGGTGAAGTTATAAAGGCCGGGGCAACAACTCTGAACATTCCTGACACTGTGGGTTATAATGTGCCAACTGAATTTGGTCAGTTGATTGCTGACATTAAATCTAATACCCCTGGAATTGATGACGTTATCATCTCGGCTCACTGCCACAATGATCTTGGACTTTCTACTGCCAACACTTTAGCGGGGGCAAGTAGAGGTGCTAGGCAACTGGAAGTAACAATCAATGGAATTGGTGAAAGGGCTGGTAATGCTTCATTAGAGGAGGTTGTCATGACCTTAAACTGCCGTGGGGAGCATGTATTTGGGGGGCTTTATACCGGAATAAATCCTCGGCATATTTATATGACAAGCAAGATGGTTTCAGAGTACACTGGAATGCATGTGCAGCAACACAAGGCTATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGTATCCATCAGGATGGAATGCTCAAGGACAAACGTACATATGAAATTATATCTCCTGAAGATATTGGGTATGACGGGTCCAGTGAAGCTGCCATTGTCCTAGGGAAACTTAGTGGACGCCATGCTTTGAAAAATCAGCTTCAACAGCTTGGTTATGAGCTGGATGATGTTCAACTTGAGACTGTATTCTGGCGCTTCAAAGGAGTAGCTGAACAGAAAAAGAGAGTCACTGATGCAGACCTCAGAGCATTGGTGTCAGATGAAGTTTTTCAGCCAGAAGTTGTCTGGAAGCTTCATGATCTACAGGTTACCTGTGGAACTCTTGGTCTTTCTACAGCAACTGTTAAACTAATTGATGCTGATGGGAGAGAGCATATTGCATGTTCAGTTGGAACGGGTCCAGTGGATTCAGCTTACAAGGCTGTTGATCTCATTGTGAAGGAACCAGTAACACTTGTTGAGTACTCTATGAATGCGGTCACAGAAGGAATAGATGCAATAGCCACTACTCGTGTTGCAATTCGAGTTGAAAACAGTGATATGGTCACTGGTGAGATATCTCAACGGACATTCAGTGGGATTGGGGCAGGAATGGACATTGTTGTTTCTAGTGTCAAGGCCTACACTGGGGCATTGAACAAGATGCTAGGTTTCAAGGAAAGGTTTCCATTGGAGATTGCAGCAGAATCAGCAGAACGAACCCCAGTGTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

629

Amino Acids

68.38

Weight (kDa)

6.4

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	88 - 367	5.3e-87	HMGL-like
HCS_D2	PF22617	381 - 465	8.4e-28	Homocitrate synthase post-HMGL domain-like
LeuA_dimer	PF08502	466 - 607	1.4e-31	LeuA allosteric (dimerisation) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006435)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	752, 798
AarI	CACCTGC	1 cut(s)	613
AasI	GACNNNNNNGTC	1 cut(s)	470
Acc36I	ACCTGC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	5 cut(s)	162, 217, 288, 346, 434
AcoI	YGGCCR	2 cut(s)	3, 354
AcsI	RAATTY	3 cut(s)	448, 722, 812
AcuI	CTGAAG	1 cut(s)	1251
AcyI	GRCGYC	4 cut(s)	309, 366, 381, 1291
AfaI	GTAC	3 cut(s)	1109, 1210, 1637
AfiI	CCNNNNNNNGG	2 cut(s)	145, 1800
AgsI	TTSAA	8 cut(s)	102, 1303, 1316, 1346, 1372, 1703, 1810, 1828
AjnI	CCWGG	2 cut(s)	494, 850
Alw26I	GTCTC	1 cut(s)	1346
AlwNI	CAGNNNCTG	2 cut(s)	1514, 1883
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	5 cut(s)	3, 354, 551, 756, 1791
ApeKI	GCWGC	4 cut(s)	85, 1126, 1262, 1853
ApoI	RAATTY	3 cut(s)	448, 722, 812
Asp700I	GAANNNNTTC	2 cut(s)	1440, 1836
AspA2I	CCTAGG	1 cut(s)	1273
AspLEI	GCGC	6 cut(s)	164, 219, 311, 346, 348, 1368
AspS9I	GGNCC	2 cut(s)	1251, 1571
AsuC2I	CCSGG	5 cut(s)	306, 385, 392, 695, 760
AsuHPI	GGTGA	7 cut(s)	24, 310, 637, 661, 755, 986, 1736
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	2 cut(s)	1251, 1571
AvrII	CCTAGG	1 cut(s)	1273
BalI	TGGCCA	2 cut(s)	5, 356
BanI	GGYRCC	1 cut(s)	308
BauI	CACGAG	1 cut(s)	1683
BbsI	GAAGAC	1 cut(s)	617
BbvCI	CCTCAGC	1 cut(s)	605
BbvI	GCAGC	4 cut(s)	97, 1138, 1249, 1865
BccI	CCATC	4 cut(s)	1090, 1181, 1188, 1529
BceAI	ACGGC	4 cut(s)	307, 404, 537, 1011
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	2 cut(s)	496, 852
BciVI	GTATCC	1 cut(s)	1187
BcnI	CCSGG	5 cut(s)	306, 385, 392, 695, 760
BcoDI	GTCTC	1 cut(s)	1346
BfaI	CTAG	5 cut(s)	660, 942, 1274, 1782, 1820
BfmI	CTRYAG	2 cut(s)	1475, 1506
BfoI	RGCGCY	2 cut(s)	312, 1369
BfuAI	ACCTGC	1 cut(s)	613
BfuI	GTATCC	1 cut(s)	1187
BglII	AGATCT	1 cut(s)	710
BisI	GCNGC	8 cut(s)	86, 118, 165, 220, 396, 1127, 1263, 1854
BlnI	CCTAGG	1 cut(s)	1273
BlsI	GCNGC	8 cut(s)	87, 119, 166, 221, 397, 1128, 1264, 1855
BmcAI	AGTACT	1 cut(s)	1637
Bme1390I	CCNGG	7 cut(s)	306, 385, 392, 496, 695, 760, 852
Bme18I	GGWCC	2 cut(s)	1251, 1571
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	1251, 1571
BmiI	GGNNCC	6 cut(s)	150, 310, 389, 1252, 1572, 1617
BmrFI	CCNGG	7 cut(s)	306, 385, 392, 496, 695, 760, 852
BmrI	ACTGGG	2 cut(s)	1809, 1871
BmsI	GCATC	9 cut(s)	56, 252, 276, 407, 691, 1396, 1519, 1657, 1806
BmuI	ACTGGG	2 cut(s)	1809, 1871
BpiI	GAAGAC	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	1181, 1370
BpuMI	CCSGG	5 cut(s)	306, 385, 392, 695, 760
BsaHI	GRCGYC	4 cut(s)	309, 366, 381, 1291
BsaJI	CCNNGG	8 cut(s)	304, 324, 554, 759, 850, 1027, 1070, 1273
BsaWI	WCCGGW	1 cut(s)	1058
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 1800
Bse118I	RCCGGY	1 cut(s)	704
Bse3DI	GCAATG	3 cut(s)	339, 508, 570
BseBI	CCWGG	2 cut(s)	496, 852
BseDI	CCNNGG	8 cut(s)	304, 324, 554, 759, 850, 1027, 1070, 1273
BseGI	GGATG	3 cut(s)	267, 1192, 1342
BseLI	CCNNNNNNNGG	2 cut(s)	145, 1800
BseMI	GCAATG	3 cut(s)	339, 508, 570
BseMII	CTCAG	3 cut(s)	596, 705, 1429
BsePI	GCGCGC	1 cut(s)	344
BseRI	GAGGAG	2 cut(s)	655, 1016
BseXI	GCAGC	4 cut(s)	97, 1138, 1249, 1865
BsgI	GTGCAG	1 cut(s)	1145
Bsh1236I	CGCG	5 cut(s)	162, 217, 288, 346, 434
BshFI	GGCC	5 cut(s)	5, 356, 553, 758, 1793
BshNI	GGYRCC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	7 cut(s)	306, 384, 392, 695, 705, 759, 1059
BslFI	GGGAC	3 cut(s)	218, 286, 458
BslI	CCNNNNNNNGG	2 cut(s)	145, 1800
BsmAI	GTCTC	1 cut(s)	1346
BsmFI	GGGAC	3 cut(s)	218, 286, 458
BsmI	GAATGC	3 cut(s)	1122, 1197, 1651
BsnI	GGCC	5 cut(s)	5, 356, 553, 758, 1793
BsoBI	CYCGRG	1 cut(s)	130
Bsp143I	GATC	7 cut(s)	429, 480, 627, 710, 892, 1471, 1600
Bsp68I	TCGCGA	1 cut(s)	434
BspANI	GGCC	5 cut(s)	5, 356, 553, 758, 1793
BspCNI	CTCAG	3 cut(s)	597, 706, 1428
BspFNI	CGCG	5 cut(s)	162, 217, 288, 346, 434
BspHI	TCATGA	2 cut(s)	1011, 1468
BspLI	GGNNCC	6 cut(s)	150, 310, 389, 1252, 1572, 1617
BspMI	ACCTGC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	3 cut(s)	339, 508, 570
BsrFI	RCCGGY	1 cut(s)	704
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	8 cut(s)	304, 324, 554, 759, 850, 1027, 1070, 1273
BssHII	GCGCGC	1 cut(s)	344
BssMI	GATC	7 cut(s)	429, 480, 627, 710, 892, 1471, 1600
BssNI	GRCGYC	4 cut(s)	309, 366, 381, 1291
BssSI	CACGAG	1 cut(s)	1683
BssT1I	CCWWGG	2 cut(s)	324, 1273
Bst2BI	CACGAG	1 cut(s)	1683
Bst2UI	CCWGG	2 cut(s)	496, 852
Bst4CI	ACNGT	6 cut(s)	10, 467, 790, 1357, 1516, 1709
BstACI	GRCGYC	4 cut(s)	309, 366, 381, 1291
BstC8I	GCNNGC	6 cut(s)	191, 296, 346, 350, 354, 706
BstDEI	CTNAG	4 cut(s)	605, 714, 1283, 1415
BstDSI	CCRYGG	1 cut(s)	1027
BstEII	GGTNACC	1 cut(s)	1480
BstF5I	GGATG	3 cut(s)	267, 1192, 1342
BstFNI	CGCG	5 cut(s)	162, 217, 288, 346, 434
BstH2I	RGCGCY	2 cut(s)	312, 1369
BstHHI	GCGC	6 cut(s)	164, 219, 311, 346, 348, 1368
BstKTI	GATC	7 cut(s)	432, 483, 630, 713, 895, 1474, 1603
BstMAI	GTCTC	1 cut(s)	1346
BstMBI	GATC	7 cut(s)	429, 480, 627, 710, 892, 1471, 1600
BstMWI	GCNNNNNNNGC	9 cut(s)	126, 358, 530, 672, 989, 1126, 1318, 1592, 1862
BstNI	CCWGG	2 cut(s)	496, 852
BstNSI	RCATGY	3 cut(s)	1040, 1124, 1557
BstPI	GGTNACC	1 cut(s)	1480
BstSCI	CCNGG	7 cut(s)	304, 383, 390, 494, 693, 758, 850
BstSFI	CTRYAG	2 cut(s)	1475, 1506
BstUI	CGCG	5 cut(s)	162, 217, 288, 346, 434
BstV1I	GCAGC	4 cut(s)	97, 1138, 1249, 1865
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	710
BstXI	CCANNNNNNTGG	1 cut(s)	1187
BstYI	RGATCY	1 cut(s)	710
BsuI	GTATCC	1 cut(s)	1187
BsuRI	GGCC	5 cut(s)	5, 356, 553, 758, 1793
BtgI	CCRYGG	1 cut(s)	1027
BtsCI	GGATG	3 cut(s)	267, 1192, 1342
BtsI	GCAGTG	1 cut(s)	880
BtuMI	TCGCGA	1 cut(s)	434
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	6 cut(s)	191, 296, 346, 350, 354, 706
CaiI	CAGNNNCTG	2 cut(s)	1514, 1883
CciI	TCATGA	2 cut(s)	1011, 1468
CfoI	GCGC	6 cut(s)	164, 219, 311, 346, 348, 1368
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	1251, 1571
CseI	GACGC	3 cut(s)	355, 389, 1299
Csp6I	GTAC	3 cut(s)	1108, 1209, 1636
CviAII	CATG	8 cut(s)	525, 1012, 1037, 1121, 1166, 1295, 1469, 1554
CviQI	GTAC	3 cut(s)	1108, 1209, 1636
DdeI	CTNAG	4 cut(s)	605, 714, 1283, 1415
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	7 cut(s)	431, 482, 629, 712, 894, 1473, 1602
DpnII	GATC	7 cut(s)	429, 480, 627, 710, 892, 1471, 1600
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
EaeI	YGGCCR	2 cut(s)	3, 354
Eco130I	CCWWGG	2 cut(s)	324, 1273
Eco147I	AGGCCT	1 cut(s)	1793
Eco32I	GATATC	1 cut(s)	1731
Eco47I	GGWCC	2 cut(s)	1251, 1571
Eco57I	CTGAAG	1 cut(s)	1251
Eco88I	CYCGRG	1 cut(s)	130
Eco91I	GGTNACC	1 cut(s)	1480
EcoO65I	GGTNACC	1 cut(s)	1480
EcoRII	CCWGG	2 cut(s)	494, 850
EcoRV	GATATC	1 cut(s)	1731
EcoT14I	CCWWGG	2 cut(s)	324, 1273
EcoT22I	ATGCAT	1 cut(s)	1122
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
ErhI	CCWWGG	2 cut(s)	324, 1273
FaeI	CATG	8 cut(s)	528, 1015, 1040, 1124, 1169, 1298, 1472, 1557
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	3 cut(s)	218, 286, 458
FatI	CATG	8 cut(s)	524, 1011, 1036, 1120, 1165, 1294, 1468, 1553
FauI	CCCGC	1 cut(s)	916
FauNDI	CATATG	2 cut(s)	591, 1213
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	8 cut(s)	86, 118, 165, 220, 396, 1127, 1263, 1854
FokI	GGATG	3 cut(s)	254, 1199, 1349
Fsp4HI	GCNGC	8 cut(s)	86, 118, 165, 220, 396, 1127, 1263, 1854
FspBI	CTAG	5 cut(s)	660, 942, 1274, 1782, 1820
GlaI	GCGC	6 cut(s)	163, 218, 310, 345, 347, 1367
GluI	GCNGC	8 cut(s)	86, 118, 165, 220, 396, 1127, 1263, 1854
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	2 cut(s)	312, 1369
HaeIII	GGCC	5 cut(s)	5, 356, 553, 758, 1793
HapII	CCGG	7 cut(s)	306, 384, 392, 695, 705, 759, 1059
HgaI	GACGC	3 cut(s)	355, 389, 1299
HhaI	GCGC	6 cut(s)	164, 219, 311, 346, 348, 1368
Hin1I	GRCGYC	4 cut(s)	309, 366, 381, 1291
Hin1II	CATG	8 cut(s)	528, 1015, 1040, 1124, 1169, 1298, 1472, 1557
Hin6I	GCGC	6 cut(s)	162, 217, 309, 344, 346, 1366
HinP1I	GCGC	6 cut(s)	162, 217, 309, 344, 346, 1366
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	1463
HinfI	GANTC	5 cut(s)	559, 586, 1398, 1580, 1859
HpaII	CCGG	7 cut(s)	306, 384, 392, 695, 705, 759, 1059
HphI	GGTGA	7 cut(s)	24, 310, 637, 661, 755, 986, 1736
Hpy166II	GTNNAC	3 cut(s)	370, 1110, 1289
Hpy8I	GTNNAC	3 cut(s)	370, 1110, 1289
Hpy99I	CGWCG	3 cut(s)	293, 371, 383
HpyAV	CCTTC	6 cut(s)	397, 502, 610, 712, 1606, 1652
HpyCH4III	ACNGT	6 cut(s)	10, 467, 790, 1357, 1516, 1709
HpyCH4IV	ACGT	3 cut(s)	231, 864, 1207
HpyF10VI	GCNNNNNNNGC	9 cut(s)	126, 358, 530, 672, 989, 1126, 1318, 1592, 1862
HpyF3I	CTNAG	4 cut(s)	605, 714, 1283, 1415
HpySE526I	ACGT	3 cut(s)	231, 864, 1207
Hsp92I	GRCGYC	4 cut(s)	309, 366, 381, 1291
Hsp92II	CATG	8 cut(s)	528, 1015, 1040, 1124, 1169, 1298, 1472, 1557
HspAI	GCGC	6 cut(s)	162, 217, 309, 344, 346, 1366
KasI	GGCGCC	1 cut(s)	308
KroI	GCCGGC	1 cut(s)	704
KroNI	GCCGGC	1 cut(s)	706
Kzo9I	GATC	7 cut(s)	429, 480, 627, 710, 892, 1471, 1600
LmnI	GCTCC	8 cut(s)	93, 154, 288, 595, 619, 663, 1033, 1148
Lsp1109I	GCAGC	4 cut(s)	97, 1138, 1249, 1865
LweI	GCATC	9 cut(s)	56, 252, 276, 407, 691, 1396, 1519, 1657, 1806
MaeI	CTAG	5 cut(s)	660, 942, 1274, 1782, 1820
MaeII	ACGT	3 cut(s)	231, 864, 1207
MaeIII	GTNAC	6 cut(s)	955, 1399, 1480, 1621, 1651, 1717
MalI	GATC	7 cut(s)	431, 482, 629, 712, 894, 1473, 1602
MboI	GATC	7 cut(s)	429, 480, 627, 710, 892, 1471, 1600
MboII	GAAGA	6 cut(s)	42, 45, 436, 622, 710, 1244
MflI	RGATCY	1 cut(s)	710
MlsI	TGGCCA	2 cut(s)	5, 356
MluCI	AATT	8 cut(s)	448, 722, 812, 855, 969, 1218, 1524, 1692
MluNI	TGGCCA	2 cut(s)	5, 356
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	1407
MmeI	TCCRAC	3 cut(s)	273, 1126, 1543
Mox20I	TGGCCA	2 cut(s)	5, 356
Mph1103I	ATGCAT	1 cut(s)	1122
MroNI	GCCGGC	1 cut(s)	704
MroXI	GAANNNNTTC	2 cut(s)	1440, 1836
MscI	TGGCCA	2 cut(s)	5, 356
MseI	TTAA	4 cut(s)	516, 837, 1019, 1518
MslI	CAYNNNNRTG	3 cut(s)	1115, 1170, 1185
Msp20I	TGGCCA	2 cut(s)	5, 356
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	7 cut(s)	306, 384, 392, 695, 705, 759, 1059
MspR9I	CCNGG	7 cut(s)	306, 385, 392, 496, 695, 760, 852
Mva1269I	GAATGC	3 cut(s)	1122, 1197, 1651
MvaI	CCWGG	2 cut(s)	496, 852
MvnI	CGCG	5 cut(s)	162, 217, 288, 346, 434
MwoI	GCNNNNNNNGC	9 cut(s)	126, 358, 530, 672, 989, 1126, 1318, 1592, 1862
NaeI	GCCGGC	1 cut(s)	706
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	5 cut(s)	306, 385, 392, 695, 760
NdeI	CATATG	2 cut(s)	591, 1213
NdeII	GATC	7 cut(s)	429, 480, 627, 710, 892, 1471, 1600
NgoMIV	GCCGGC	1 cut(s)	704
NlaIII	CATG	8 cut(s)	528, 1015, 1040, 1124, 1169, 1298, 1472, 1557
NlaIV	GGNNCC	6 cut(s)	150, 310, 389, 1252, 1572, 1617
NmeAIII	GCCGAG	4 cut(s)	342, 579, 854, 1051
NmuCI	GTSAC	3 cut(s)	1399, 1651, 1717
NruI	TCGCGA	1 cut(s)	434
NsiI	ATGCAT	1 cut(s)	1122
NspI	RCATGY	3 cut(s)	1040, 1124, 1557
PagI	TCATGA	2 cut(s)	1011, 1468
PaqCI	CACCTGC	1 cut(s)	613
PauI	GCGCGC	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	1793
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	3 cut(s)	1122, 1197, 1651
PdiI	GCCGGC	1 cut(s)	706
PdmI	GAANNNNTTC	2 cut(s)	1440, 1836
PfeI	GAWTC	4 cut(s)	559, 586, 1580, 1859
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	8 cut(s)	87, 119, 166, 221, 397, 1128, 1264, 1855
PleI	GAGTC	1 cut(s)	1406
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	1406
PsiI	TTATAA	2 cut(s)	752, 798
Psp6I	CCWGG	2 cut(s)	494, 850
PspEI	GGTNACC	1 cut(s)	1480
PspGI	CCWGG	2 cut(s)	494, 850
PspN4I	GGNNCC	6 cut(s)	150, 310, 389, 1252, 1572, 1617
PspPI	GGNCC	2 cut(s)	1251, 1571
PstNI	CAGNNNCTG	2 cut(s)	1514, 1883
PsuI	RGATCY	1 cut(s)	710
PsyI	GACNNNGTC	1 cut(s)	230
PteI	GCGCGC	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	352
RruI	TCGCGA	1 cut(s)	434
RsaI	GTAC	3 cut(s)	1109, 1210, 1637
RsaNI	GTAC	3 cut(s)	1108, 1209, 1636
RseI	CAYNNNNRTG	3 cut(s)	1115, 1170, 1185
SalI	GTCGAC	1 cut(s)	368
SaqAI	TTAA	4 cut(s)	516, 837, 1019, 1518
SatI	GCNGC	8 cut(s)	86, 118, 165, 220, 396, 1127, 1263, 1854
Sau3AI	GATC	7 cut(s)	429, 480, 627, 710, 892, 1471, 1600
Sau96I	GGNCC	2 cut(s)	1251, 1571
ScaI	AGTACT	1 cut(s)	1637
SchI	GAGTC	1 cut(s)	1407
ScrFI	CCNGG	7 cut(s)	306, 385, 392, 496, 695, 760, 852
SfaNI	GCATC	9 cut(s)	56, 252, 276, 407, 691, 1396, 1519, 1657, 1806
SfcI	CTRYAG	2 cut(s)	1475, 1506
SfoI	GGCGCC	1 cut(s)	310
SinI	GGWCC	2 cut(s)	1251, 1571
SmiMI	CAYNNNNRTG	3 cut(s)	1115, 1170, 1185
SmlI	CTYRAG	2 cut(s)	1196, 1349
SmoI	CTYRAG	2 cut(s)	1196, 1349
Sse9I	AATT	8 cut(s)	448, 722, 812, 855, 969, 1218, 1524, 1692
SseBI	AGGCCT	1 cut(s)	1793
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	5 cut(s)	660, 942, 1274, 1782, 1820
StuI	AGGCCT	1 cut(s)	1793
StyD4I	CCNGG	7 cut(s)	304, 383, 390, 494, 693, 758, 850
StyI	CCWWGG	2 cut(s)	324, 1273
TaaI	ACNGT	6 cut(s)	10, 467, 790, 1357, 1516, 1709
TaiI	ACGT	3 cut(s)	234, 867, 1210
TaqI	TCGA	7 cut(s)	273, 336, 369, 378, 401, 630, 1696
TasI	AATT	8 cut(s)	448, 722, 812, 855, 969, 1218, 1524, 1692
TatI	WGTACW	2 cut(s)	1107, 1635
TauI	GCSGC	4 cut(s)	120, 167, 222, 398
TfiI	GAWTC	4 cut(s)	559, 586, 1580, 1859
Tru1I	TTAA	4 cut(s)	516, 837, 1019, 1518
Tru9I	TTAA	4 cut(s)	516, 837, 1019, 1518
TseFI	GTSAC	3 cut(s)	1399, 1651, 1717
TseI	GCWGC	4 cut(s)	85, 1126, 1262, 1853
Tsp45I	GTSAC	3 cut(s)	1399, 1651, 1717
TspDTI	ATGAA	8 cut(s)	559, 578, 984, 1182, 1230, 1449, 1457, 1658
TspGWI	ACGGA	2 cut(s)	86, 1753
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	1251, 1571
XapI	RAATTY	3 cut(s)	448, 722, 812
XceI	RCATGY	3 cut(s)	1040, 1124, 1557
XcmI	CCANNNNNNNNNTGG	2 cut(s)	893, 1455
XmaJI	CCTAGG	1 cut(s)	1273
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	2 cut(s)	1440, 1836
XspI	CTAG	5 cut(s)	660, 942, 1274, 1782, 1820
ZrmI	AGTACT	1 cut(s)	1637
Zsp2I	ATGCAT	1 cut(s)	1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.