Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006435

Physical Location & Seq

Genomic Coordinates Forward (+)

42186452 .. 42186902

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGACAAGTACCATTATGCGTGTGGAGGAAAAGATTGATGAACTGGGAGGTCTTGTTGGATGGATAAAAGAAGAATTGTTCAAAGTAGTGAGAGAAGATGGTAATCGGGATGTCAGTATAAAAAGGGACGAGGCTAATCATGAAAGGAAGAAAGTGGAACAGTCAGCAAATGACACTATTGGGCAAAACCATCAGGAAAGTGATGATTTCAATATTCAAAGTTCAAAAGAAGTTGAGGTTAATGACGAGTCATCATGTCAAATACATAGTGAGGACAACTCTGAGGCAGCACATCATAAGGATTTCCATATTCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

106

Amino Acids

12.22

Weight (kDa)

4.78

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006435)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	10
AgsI	TTSAA	4 cut(s)	82, 211, 218, 225
ApeKI	GCWGC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	3 cut(s)	54, 92, 198
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BsaBI	GATNNNNATC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bse1I	ACTGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	102
BseGI	GGATG	2 cut(s)	65, 115
BseJI	GATNNNNATC	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	65, 115
BstV1I	GCAGC	1 cut(s)	299
BtsCI	GGATG	2 cut(s)	65, 115
CciI	TCATGA	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	140, 255
CviJI	RGCY	1 cut(s)	134
CviKI_1	RGCY	1 cut(s)	134
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	282
FaeI	CATG	2 cut(s)	143, 258
FaiI	YATR	7 cut(s)	17, 119, 141, 256, 267, 297, 309
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	2 cut(s)	139, 254
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	2 cut(s)	72, 122
Fsp4HI	GCNGC	1 cut(s)	288
GluI	GCNGC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	143, 258
HinfI	GANTC	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	283, 320
Hpy188III	TCNNGA	3 cut(s)	107, 140, 194
HpyCH4III	ACNGT	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	143, 258
LpnPI	CCDG	2 cut(s)	29, 179
Lsp1109I	GCAGC	1 cut(s)	299
MboII	GAAGA	3 cut(s)	83, 107, 160
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	6 cut(s)	19, 41, 124, 229, 265, 277
MseI	TTAA	1 cut(s)	240
NlaIII	CATG	2 cut(s)	143, 258
PagI	TCATGA	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	257
SetI	ASST	2 cut(s)	52, 240
Sse9I	AATT	1 cut(s)	74
SspI	AATATT	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	162
TasI	AATT	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	54, 156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.