Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006435

Physical Location & Seq

Genomic Coordinates Reverse (-)

22750754 .. 22751299

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTGCAAACTATAGCCCCCTCAAGTTCTGGTTCTGCATTTTCTTAGTCTTGCTAAGATTCTCCAGCTCCGAGTCTCGTTCTCCTCCATCGACTTCCAACAGGATGAAGATCAGCCACCGACCTCCTCGGGCATTCTTGATGGAGACTGCCAAACAAGTGTTGAAGACGAGCATTGCAAGACAAGCAGCTGCAGCAGGAAGAACTCCATTCGTGTCGAAGCGAGTCAGTCCCGGGGGACCTGATGGACACCATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

86

Amino Acids

9.55

Weight (kDa)

11.57

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006435)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	2 cut(s)	69, 191
AluI	AGCT	2 cut(s)	69, 191
Alw26I	GTCTC	2 cut(s)	81, 140
Ama87I	CYCGRG	2 cut(s)	129, 233
ApeKI	GCWGC	4 cut(s)	5, 188, 191, 194
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	2 cut(s)	234, 235
AvaI	CYCGRG	2 cut(s)	129, 233
AvaII	GGWCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	178, 200, 206
BccI	CCATC	3 cut(s)	97, 136, 239
BcnI	CCSGG	2 cut(s)	234, 235
BcoDI	GTCTC	2 cut(s)	81, 140
BfmI	CTRYAG	2 cut(s)	13, 192
BisI	GCNGC	4 cut(s)	6, 189, 192, 195
BlsI	GCNGC	4 cut(s)	7, 190, 193, 196
Bme1390I	CCNGG	2 cut(s)	234, 235
Bme18I	GGWCC	1 cut(s)	239
BmeT110I	CYCGRG	2 cut(s)	129, 233
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	234, 235
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	234, 235
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	128, 233, 234
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	128, 233, 234
BseGI	GGATG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	174
BseRI	GAGGAG	2 cut(s)	75, 117
BseXI	GCAGC	3 cut(s)	178, 200, 206
BsiHKCI	CYCGRG	2 cut(s)	129, 233
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	216, 252
BsmAI	GTCTC	2 cut(s)	81, 140
BsmFI	GGGAC	2 cut(s)	216, 252
BsmI	GAATGC	1 cut(s)	134
BsoBI	CYCGRG	2 cut(s)	129, 233
Bsp143I	GATC	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	128, 233, 234
BssMI	GATC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	46, 56
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	81, 140
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 194
BstSCI	CCNGG	2 cut(s)	232, 233
BstSFI	CTRYAG	2 cut(s)	13, 192
BstV1I	GCAGC	3 cut(s)	178, 200, 206
BstV2I	GAAGAC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	239
Cfr9I	CCCGGG	1 cut(s)	233
CviJI	RGCY	5 cut(s)	5, 18, 69, 117, 191
CviKI_1	RGCY	5 cut(s)	5, 18, 69, 117, 191
DdeI	CTNAG	2 cut(s)	46, 56
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	239
Eco88I	CYCGRG	2 cut(s)	129, 233
EcoO109I	RGGNCCY	1 cut(s)	239
FaiI	YATR	1 cut(s)	15
FaqI	GGGAC	2 cut(s)	216, 252
Fnu4HI	GCNGC	4 cut(s)	6, 189, 192, 195
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	6, 189, 192, 195
GluI	GCNGC	4 cut(s)	6, 189, 192, 195
GsuI	CTGGAG	1 cut(s)	49
HapII	CCGG	1 cut(s)	234
HinfI	GANTC	3 cut(s)	60, 74, 225
HpaII	CCGG	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	8, 39, 179, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 194
HpyF3I	CTNAG	2 cut(s)	46, 56
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	6 cut(s)	16, 79, 88, 183, 247, 255
Lsp1109I	GCAGC	3 cut(s)	178, 200, 206
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	3 cut(s)	121, 178, 213
MlyI	GAGTC	2 cut(s)	83, 234
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	4 cut(s)	32, 96, 135, 138
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	234, 235
Mva1269I	GAATGC	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	185, 194
NciI	CCSGG	2 cut(s)	234, 235
NdeII	GATC	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	4 cut(s)	7, 190, 193, 196
PleI	GAGTC	2 cut(s)	82, 233
PpsI	GAGTC	2 cut(s)	82, 233
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	239
PspPPI	RGGWCCY	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	191
SatI	GCNGC	4 cut(s)	6, 189, 192, 195
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	2 cut(s)	83, 234
ScrFI	CCNGG	2 cut(s)	234, 235
SetI	ASST	4 cut(s)	71, 127, 193, 244
SfcI	CTRYAG	2 cut(s)	13, 192
SinI	GGWCC	1 cut(s)	239
SmaI	CCCGGG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	232, 233
TaqI	TCGA	2 cut(s)	92, 218
TfiI	GAWTC	1 cut(s)	60
TseI	GCWGC	4 cut(s)	5, 188, 191, 194
TspDTI	ATGAA	1 cut(s)	122
TspMI	CCCGGG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	239
XmaI	CCCGGG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.