Rorug02G0392400

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000618
Physical Location & Seq
Forward (+)
50263489 .. 50268603
5115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0392400.1

Sequence Viewer

Length: 2106 bp
ATGAGTCGGAGCTCCGATCCGGTCGACCCGCTTCTGGGCTTCACTCTCTTCCCCAAGGCCAAGTTCTCGTCGGACCCTTCCAAGCCCTACGACTTCGATCACGACCTCCAAGCCATCAACCTCCACCTCAAGTCCACCACGGCCTCACTATCGGGTCTTAAAGATCAGGCGAAGAACATTTTAAGCGGCAGTTCAGCTATTCCGCAGTCTGATATGTCACAAGCATTGAAACACCTAAACAGAGTGGTTCCTGCAAATGATGTGGACAATCACCGAGAGAGAAGACCTGCCTTGGGTCTTAAACGCGCTCGTTTTTCTTTGAAACCTAATTCCAGTCAACCTGATATTACTTTGGGACCAACATTCGATTCTAAAAAATACAAAGACCCCGACGAATACTTCACTTTCTATGAAAGAAATGAGAATGCTAAAAGAGAACTGGAGAAGCAGATGGGTGGTGCTGTATTTGATGGAGATATGCAGAATCCATCACCGATTACACGTGCCCGGCGACCAGGAATTCCGCGGAGGTCAGTGAAATACAAGCATCGCATTTCATCGCTTTACAATGAAATCGTTGAGAATGCTATATCCACTCAAGAGACGTTTGAAACGAGCATTCTCAGTCCATTGAATCACAACTCACAAACAGAATCCCATGAAAAAGTTGCATTGGCGGAGATGGATTTAGCTGGTTCAAAAGTTAAGGAAGACAACAAATGGAATAATGACATTCTGGATGGGCTACTGTCTCAGCCTACCGAAGATCTAGAAGGGGATGGCGCTTTCCGTCTCTTAAAGGAGAGCTTGTACATTAAAAATTTTGAACTAGAGGATATATGCCTTCCAGAATTCCCAGATACCAAAAAGGCTGATTTGAAGTCTTCAAGAAAAACCTTGCCAAACCCTAGACCTGTGAAACCTAGTCAGGGGGCAGAAGGGTCCATTCATTTAGCTTCTCCAACACCACCAAAGAGCCCTTTGGCTTCGTTGTCTTTATTGAGTAAGAGAAGTTTAGTGTCAATTCCATCAAATGATCCATTTTCAGCTTTTGATATTGATCAGTTTCCGGTGACAAATCCTTCTTCAGTTGAGAATAGAAACAAACAATCTGATCGGATTGACATTGCAGAGCAGAAAATGATTTCTGATACGTTGATGTCACCTTTAATTAAACAAAGTGACAAGATTGAAGGTGCCAAGACAGGTTCATGTGAGGTGACTGTTAAGGAATTCACTAATGCAGTGAAAAGGTCTAAGAGGAACAGTTTAAGTAAACTTGGTGTTGGTTATGATGTTGACATGGAGGAGGAGATTGGAGGCAGTAAGGTTACGAGTGAGACATTAAGTATGCCTGAGGATGATACAGATACTTGGGCAAATGGTGTTGATAATAGCGACAAGATACAGGTGGAAGACAAGCTGCAGGAACCAGGTCCTGAAGTTAATGTGGCAGACTCAACTTTGGAAAAGCTTAAGGGCGCTCACAGTCAAGTTGCTGATGATGTGATTGATAGTGATGAGATACAAGAGGAAGACAAAGTGCAGGAAGCAATGCCTGAACATAATGTGGAGCAAGACAAACTGCAGGATGCAGTGGCATGTGCAGAGCATGGATTTGATGCGGAAGACTCAACAGTGGAAGACTTGAACGATGCTCCAAGTCAATTAGCAGATCAATTACACTCAGCTCCAGTTGAGGAGCAATCAAGGGATAGTTTCTCCAGAAACCCTGACTTTGGTCTAGAGAAGCAGAATGAGATGATGCAAAAGCATATGGGAGTTTCATTAAACAAACCTATTGAAGCAAACTCACGTCCACGCAGAAAGCAGAAGAAAAAAGAAGTTTCTAAGAGGCAAAGTCTAGCAGGTCATGGTACCTCAATGAAATCTGGGGTAAGGCGAAGCACCAGGATCAGGACAAGACCTTTGGAGTATTGGAAAGGGGAACGACTATTATTTGGACGCATACATAATAGTCTGCCGACGGTAATTGGGATGAAGTACGCCTCTCCAGGAAAGGGTGAGGGAAAAGCTTCTCTGAAGGTGAAGTCGTTTGTCTCTGATAAACACAAAGTGCTTGTTGACCTAGTTTCGTTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

701

Amino Acids

77.92

Weight (kDa)

5.89

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04580 FvH4_3g37050 FvH4_3g37060 FvH4_4g30270 FvH4_6g34780 FvH4_6g34780
malus_domestica MD11G1092500.v1.1 MD17G1025500.v1.1
prunus_persica Prupe.1G206300_v2.0.a1 Prupe.3G040700_v2.0.a1 Prupe.3G040900_v2.0.a1 Prupe.3G041300_v2.0.a1 Prupe.3G041600_v2.0.a1 Prupe.3G061600_v2.0.a1 Prupe.4G109300_v2.0.a1 Prupe.6G069600_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.8G014800_v2.0.a1 Prupe.8G037600_v2.0.a1
pyrus_communis pycom09g10050 pycom17g16040
rosa_chinensis RchiOBHm_Chr2g0145601 RchiOBHm_Chr5g0066461 RchiOBHm_Chr5g0066471 RchiOBHm_Chr5g0066481
rosa_laevigata RLG00000019691 RLG00000020148 RLG00000020153 RLG00000035869 RLG00000035878 RLG00000035880
rosa_multiflora Rmu_co8287763.1_g000001 Rmu_co8480723.1_g000001 Rmu_co8493537.1_g000001 Rmu_sc0002170.1_g000044 Rmu_sc0002599.1_g000001 Rmu_sc0002718.1_g000013 Rmu_sc0003046.1_g000008 Rmu_sc0007761.1_g000002
rosa_roxburghii Rroxscaffold_152G00434590 Rroxscaffold_1G00014400 Rroxscaffold_1G00014410 Rroxscaffold_1G00014570 Rroxscaffold_2G00100650 Rroxscaffold_2G00106640
rosa_rugosa Rorug02G0392200 Rorug02G0392400 Rorug05G0378500 Rorug05G0378500 Rorug05G0378500
rosa_samantha Rh2AG446400 Rh2AG446500 Rh2BG457100 Rh2BG457200 Rh2BG457300 Rh2BG458200 Rh2CG432200 Rh2CG433100 Rh2CG433200 Rh2DG466800 Rh2DG466900 Rh2DG467000 Rh2DG467800 Rh3DG193900 Rh5AG437600 Rh5AG437700 Rh5AG437800 Rh5BG453700 Rh5DG468800 Rh7AG352500 Rh7CG369800 Rh7DG349000
rosa_wichuraiana Rw2G036410 Rw2G036460 Rw3G014910 Rw5G040940 Rw7G029760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 295, 1859
Acc65I GGTACC 1 cut(s) 1877
AccB1I GGYRCC 2 cut(s) 1196, 1877
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 306, 526
AciI CCGC 7 cut(s) 29, 186, 203, 524, 526, 677, 1625
AclWI GGATC 3 cut(s) 11, 1031, 1922
AcsI RAATTY 4 cut(s) 519, 820, 851, 1232
AcuI CTGAAG 3 cut(s) 1071, 1461, 2063
AcvI CACGTG 1 cut(s) 503
AdeI CACNNNGTG 1 cut(s) 2077
AfaI GTAC 3 cut(s) 812, 1879, 2006
AfiI CCNNNNNNNGG 7 cut(s) 34, 35, 293, 929, 1739, 1917, 2021
AflII CTTAAG 1 cut(s) 1475
AflIII ACRYGT 1 cut(s) 500
AjiI CACGTC 1 cut(s) 1817
AjnI CCWGG 4 cut(s) 514, 1432, 1910, 2014
AjuI GAANNNNNNNTTGG 4 cut(s) 47, 79, 352, 384
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 5 cut(s) 596, 756, 797, 1334, 2065
AlwI GGATC 3 cut(s) 11, 1031, 1922
AlwNI CAGNNNCTG 1 cut(s) 1439
AoxI GGCC 2 cut(s) 57, 141
ApeKI GCWGC 1 cut(s) 1423
ApoI RAATTY 4 cut(s) 519, 820, 851, 1232
ArsI GACNNNNNNTTYG 2 cut(s) 1912, 1944
Asp700I GAANNNNTTC 1 cut(s) 2035
Asp718I GGTACC 1 cut(s) 1877
AspLEI GCGC 3 cut(s) 308, 785, 1484
AspS9I GGNCC 4 cut(s) 73, 356, 942, 1436
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 7 cut(s) 263, 483, 1084, 1155, 1231, 2036, 2059
AvaII GGWCC 4 cut(s) 73, 356, 942, 1436
AxyI CCTNAGG 1 cut(s) 1356
BaeGI GKGCMC 1 cut(s) 508
BanI GGYRCC 2 cut(s) 1196, 1877
BanII GRGCYC 2 cut(s) 14, 980
BbrPI CACGTG 1 cut(s) 503
BbsI GAAGAC 7 cut(s) 289, 717, 876, 1422, 1542, 1635, 1650
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 1410
BccI CCATC 8 cut(s) 122, 445, 464, 496, 676, 734, 773, 1036
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 4 cut(s) 516, 1434, 1912, 2016
BclI TGATCA 1 cut(s) 1060
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 5 cut(s) 596, 756, 797, 1334, 2065
BfaI CTAG 7 cut(s) 770, 830, 909, 924, 1745, 1865, 2090
BfmI CTRYAG 2 cut(s) 1424, 1586
BfoI RGCGCY 2 cut(s) 786, 1485
BfrI CTTAAG 1 cut(s) 1475
BfuAI ACCTGC 2 cut(s) 295, 1859
BglII AGATCT 1 cut(s) 766
BisI GCNGC 2 cut(s) 187, 1424
BlsI GCNGC 2 cut(s) 188, 1425
Bme1390I CCNGG 5 cut(s) 508, 516, 1434, 1912, 2016
Bme18I GGWCC 4 cut(s) 73, 356, 942, 1436
BmgBI CACGTC 1 cut(s) 1817
BmgT120I GGNCC 4 cut(s) 73, 356, 942, 1436
BmiI GGNNCC 7 cut(s) 75, 249, 357, 943, 1198, 1431, 1879
BmrFI CCNGG 5 cut(s) 508, 516, 1434, 1912, 2016
BmsI GCATC 5 cut(s) 556, 1582, 1612, 1645, 1755
BoxI GACNNNNGTC 1 cut(s) 1740
BpiI GAAGAC 7 cut(s) 289, 717, 876, 1422, 1542, 1635, 1650
BpmI CTGGAG 4 cut(s) 461, 1677, 1708, 1998
BpuEI CTTGAG 2 cut(s) 113, 582
BpuMI CCSGG 1 cut(s) 508
BsaAI YACGTR 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 1059
BsaJI CCNNGG 4 cut(s) 54, 138, 291, 524
BsaWI WCCGGW 2 cut(s) 19, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 35, 293, 929, 1739, 1917, 2021
Bse1I ACTGG 3 cut(s) 333, 444, 1694
Bse21I CCTNAGG 1 cut(s) 1356
Bse3DI GCAATG 2 cut(s) 1125, 1560
Bse8I GATNNNNATC 1 cut(s) 1059
BseBI CCWGG 4 cut(s) 516, 1434, 1912, 2016
BseDI CCNNGG 4 cut(s) 54, 138, 291, 524
BseGI GGATG 5 cut(s) 745, 784, 1366, 1597, 2004
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 7 cut(s) 34, 35, 293, 929, 1739, 1917, 2021
BseMI GCAATG 2 cut(s) 1125, 1560
BseMII CTCAG 4 cut(s) 637, 767, 1347, 1701
BseNI ACTGG 3 cut(s) 333, 444, 1694
BseRI GAGGAG 3 cut(s) 1322, 1325, 1715
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 1 cut(s) 1410
BsgI GTGCAG 2 cut(s) 1565, 1626
Bsh1236I CGCG 2 cut(s) 306, 526
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 59, 143
BshNI GGYRCC 2 cut(s) 1196, 1877
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 3 cut(s) 20, 508, 1070
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 7 cut(s) 34, 35, 293, 929, 1739, 1917, 2021
BsmAI GTCTC 5 cut(s) 596, 756, 797, 1334, 2065
BsmBI CGTCTC 2 cut(s) 596, 797
BsmFI GGGAC 1 cut(s) 369
BsmI GAATGC 3 cut(s) 430, 589, 618
BsnI GGCC 2 cut(s) 59, 143
Bsp1286I GDGCHC 3 cut(s) 14, 508, 980
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 9 cut(s) 16, 97, 163, 766, 1036, 1060, 1114, 1675, 1914
BspACI CCGC 7 cut(s) 29, 186, 203, 524, 526, 677, 1625
BspANI GGCC 2 cut(s) 59, 143
BspCNI CTCAG 4 cut(s) 636, 766, 1348, 1700
BspFNI CGCG 2 cut(s) 306, 526
BspLI GGNNCC 7 cut(s) 75, 249, 357, 943, 1198, 1431, 1879
BspMAI CTGCAG 2 cut(s) 1428, 1590
BspMI ACCTGC 2 cut(s) 295, 1859
BspPI GGATC 3 cut(s) 11, 1031, 1922
BspT107I GGYRCC 2 cut(s) 1196, 1877
BspTI CTTAAG 1 cut(s) 1475
BsrDI GCAATG 2 cut(s) 1125, 1560
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 3 cut(s) 333, 444, 1694
BssECI CCNNGG 4 cut(s) 54, 138, 291, 524
BssMI GATC 9 cut(s) 16, 97, 163, 766, 1036, 1060, 1114, 1675, 1914
BssT1I CCWWGG 2 cut(s) 54, 291
Bst2UI CCWGG 4 cut(s) 516, 1434, 1912, 2016
Bst4CI ACNGT 6 cut(s) 750, 1225, 1268, 1490, 1639, 1990
Bst6I CTCTTC 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 1475
BstAUI TGTACA 1 cut(s) 810
BstBAI YACGTR 1 cut(s) 503
BstDEI CTNAG 6 cut(s) 623, 753, 1257, 1356, 1687, 1851
BstDSI CCRYGG 2 cut(s) 138, 524
BstF5I GGATG 5 cut(s) 745, 784, 1366, 1597, 2004
BstFNI CGCG 2 cut(s) 306, 526
BstH2I RGCGCY 2 cut(s) 786, 1485
BstHHI GCGC 3 cut(s) 308, 785, 1484
BstKTI GATC 9 cut(s) 19, 100, 166, 769, 1039, 1063, 1117, 1678, 1917
BstMAI GTCTC 5 cut(s) 596, 756, 797, 1334, 2065
BstMBI GATC 9 cut(s) 16, 97, 163, 766, 1036, 1060, 1114, 1675, 1914
BstMCI CGRYCG 1 cut(s) 24
BstNI CCWGG 4 cut(s) 516, 1434, 1912, 2016
BstNSI RCATGY 1 cut(s) 1605
BstPAI GACNNNNGTC 1 cut(s) 1740
BstSCI CCNGG 5 cut(s) 506, 514, 1432, 1910, 2014
BstSFI CTRYAG 2 cut(s) 1424, 1586
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 2 cut(s) 306, 526
BstV1I GCAGC 1 cut(s) 1410
BstV2I GAAGAC 7 cut(s) 289, 717, 876, 1422, 1542, 1635, 1650
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
Bsu36I CCTNAGG 1 cut(s) 1356
BsuRI GGCC 2 cut(s) 59, 143
BtgI CCRYGG 2 cut(s) 138, 524
BtgZI GCGATG 2 cut(s) 533, 543
BtrI CACGTC 1 cut(s) 1817
BtsCI GGATG 5 cut(s) 745, 784, 1366, 1597, 2004
BtsI GCAGTG 2 cut(s) 1251, 1602
BtsIMutI CAGTG 4 cut(s) 540, 1251, 1602, 1644
BveI ACCTGC 2 cut(s) 295, 1859
CaiI CAGNNNCTG 1 cut(s) 1439
CfoI GCGC 3 cut(s) 308, 785, 1484
Cfr13I GGNCC 4 cut(s) 73, 356, 942, 1436
Cfr42I CCGCGG 1 cut(s) 527
CseI GACGC 1 cut(s) 1974
CsiI ACCWGGT 1 cut(s) 1432
Csp6I GTAC 3 cut(s) 811, 1878, 2005
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 6 cut(s) 659, 1212, 1303, 1602, 1613, 1874
CviQI GTAC 3 cut(s) 811, 1878, 2005
DdeI CTNAG 6 cut(s) 623, 753, 1257, 1356, 1687, 1851
DpnI GATC 9 cut(s) 18, 99, 165, 768, 1038, 1062, 1116, 1677, 1916
DpnII GATC 9 cut(s) 16, 97, 163, 766, 1036, 1060, 1114, 1675, 1914
DraIII CACNNNGTG 1 cut(s) 2077
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 1 cut(s) 692
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 54, 291
Eco24I GRGCYC 2 cut(s) 14, 980
Eco47I GGWCC 4 cut(s) 73, 356, 942, 1436
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 3 cut(s) 1071, 1461, 2063
Eco72I CACGTG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 1356
EcoICRI GAGCTC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 1436
EcoRI GAATTC 3 cut(s) 519, 851, 1232
EcoRII CCWGG 4 cut(s) 514, 1432, 1910, 2014
EcoT14I CCWWGG 2 cut(s) 54, 291
EcoT38I GRGCYC 2 cut(s) 14, 980
ErhI CCWWGG 2 cut(s) 54, 291
Esp3I CGTCTC 2 cut(s) 596, 797
FaeI CATG 6 cut(s) 662, 1215, 1306, 1605, 1616, 1877
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FaqI GGGAC 1 cut(s) 369
FatI CATG 6 cut(s) 658, 1211, 1302, 1601, 1612, 1873
FauI CCCGC 1 cut(s) 36
FauNDI CATATG 1 cut(s) 1776
FbaI TGATCA 1 cut(s) 1060
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 187, 1424
FokI GGATG 5 cut(s) 752, 791, 1373, 1604, 2011
FriOI GRGCYC 2 cut(s) 14, 980
Fsp4HI GCNGC 2 cut(s) 187, 1424
FspBI CTAG 7 cut(s) 770, 830, 909, 924, 1745, 1865, 2090
GlaI GCGC 3 cut(s) 307, 784, 1483
GluI GCNGC 2 cut(s) 187, 1424
GsuI CTGGAG 4 cut(s) 461, 1677, 1708, 1998
HaeII RGCGCY 2 cut(s) 786, 1485
HaeIII GGCC 2 cut(s) 59, 143
HapII CCGG 3 cut(s) 20, 508, 1070
HgaI GACGC 1 cut(s) 1974
HhaI GCGC 3 cut(s) 308, 785, 1484
Hin1II CATG 6 cut(s) 662, 1215, 1306, 1605, 1616, 1877
Hin6I GCGC 3 cut(s) 306, 783, 1482
HinP1I GCGC 3 cut(s) 306, 783, 1482
HincII GTYRAC 4 cut(s) 25, 338, 1300, 2086
HindII GTYRAC 4 cut(s) 25, 338, 1300, 2086
HindIII AAGCTT 2 cut(s) 1472, 2034
HinfI GANTC 7 cut(s) 4, 368, 484, 634, 653, 1457, 1631
HpaII CCGG 3 cut(s) 20, 508, 1070
HphI GGTGA 7 cut(s) 263, 483, 1084, 1155, 1231, 2036, 2059
Hpy166II GTNNAC 8 cut(s) 25, 135, 265, 338, 1277, 1300, 1820, 2086
Hpy188I TCNGA 9 cut(s) 9, 16, 73, 211, 1114, 1119, 1150, 2043, 2065
Hpy8I GTNNAC 8 cut(s) 25, 135, 265, 338, 1277, 1300, 1820, 2086
Hpy99I CGWCG 3 cut(s) 73, 395, 1990
HpyAV CCTTC 7 cut(s) 87, 767, 854, 932, 1092, 1187, 2038
HpyCH4III ACNGT 6 cut(s) 750, 1225, 1268, 1490, 1639, 1990
HpyCH4IV ACGT 4 cut(s) 502, 605, 1154, 1816
HpyF3I CTNAG 6 cut(s) 623, 753, 1257, 1356, 1687, 1851
HpySE526I ACGT 4 cut(s) 502, 605, 1154, 1816
Hsp92II CATG 6 cut(s) 662, 1215, 1306, 1605, 1616, 1877
HspAI GCGC 3 cut(s) 306, 783, 1482
KpnI GGTACC 1 cut(s) 1881
Ksp22I TGATCA 1 cut(s) 1060
KspI CCGCGG 1 cut(s) 527
Kzo9I GATC 9 cut(s) 16, 97, 163, 766, 1036, 1060, 1114, 1675, 1914
LmnI GCTCC 6 cut(s) 9, 17, 1573, 1663, 1696, 1702
Lsp1109I GCAGC 1 cut(s) 1410
LweI GCATC 5 cut(s) 556, 1582, 1612, 1645, 1755
MabI ACCWGGT 1 cut(s) 1432
MaeI CTAG 7 cut(s) 770, 830, 909, 924, 1745, 1865, 2090
MaeII ACGT 4 cut(s) 502, 605, 1154, 1816
MaeIII GTNAC 7 cut(s) 216, 1072, 1161, 1181, 1219, 1330, 2097
MalI GATC 9 cut(s) 18, 99, 165, 768, 1038, 1062, 1116, 1677, 1916
MboI GATC 9 cut(s) 16, 97, 163, 766, 1036, 1060, 1114, 1675, 1914
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 3 cut(s) 14, 508, 980
MlyI GAGTC 3 cut(s) 13, 1451, 1625
MmeI TCCRAC 2 cut(s) 51, 986
MroXI GAANNNNTTC 1 cut(s) 2035
MspA1I CMGCKG 1 cut(s) 526
MspCI CTTAAG 1 cut(s) 1475
MspI CCGG 3 cut(s) 20, 508, 1070
MspR9I CCNGG 5 cut(s) 508, 516, 1434, 1912, 2016
Mva1269I GAATGC 3 cut(s) 430, 589, 618
MvaI CCWGG 4 cut(s) 516, 1434, 1912, 2016
MvnI CGCG 2 cut(s) 306, 526
NciI CCSGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 1776
NdeII GATC 9 cut(s) 16, 97, 163, 766, 1036, 1060, 1114, 1675, 1914
NlaIII CATG 6 cut(s) 662, 1215, 1306, 1605, 1616, 1877
NlaIV GGNNCC 7 cut(s) 75, 249, 357, 943, 1198, 1431, 1879
NmuCI GTSAC 5 cut(s) 216, 1072, 1161, 1181, 1219
NspI RCATGY 1 cut(s) 1605
PacI TTAATTAA 1 cut(s) 1173
PcsI WCGNNNNNNNCGW 2 cut(s) 508, 611
PctI GAATGC 3 cut(s) 430, 589, 618
PdmI GAANNNNTTC 1 cut(s) 2035
PfeI GAWTC 4 cut(s) 368, 484, 634, 653
PfoI TCCNGGA 1 cut(s) 2014
PkrI GCNGC 2 cut(s) 188, 1425
PleI GAGTC 3 cut(s) 12, 1451, 1625
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
PpsI GAGTC 3 cut(s) 12, 1451, 1625
Ppu21I YACGTR 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 1436
PshAI GACNNNNGTC 1 cut(s) 1740
Psp124BI GAGCTC 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 1436
Psp6I CCWGG 4 cut(s) 514, 1432, 1910, 2014
PspCI CACGTG 1 cut(s) 503
PspGI CCWGG 4 cut(s) 514, 1432, 1910, 2014
PspN4I GGNNCC 7 cut(s) 75, 249, 357, 943, 1198, 1431, 1879
PspPI GGNCC 4 cut(s) 73, 356, 942, 1436
PspPPI RGGWCCY 1 cut(s) 1436
PstI CTGCAG 2 cut(s) 1428, 1590
PstNI CAGNNNCTG 1 cut(s) 1439
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 3 cut(s) 812, 1879, 2006
RsaNI GTAC 3 cut(s) 811, 1878, 2005
SacI GAGCTC 1 cut(s) 14
SacII CCGCGG 1 cut(s) 527
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 2 cut(s) 187, 1424
Sau3AI GATC 9 cut(s) 16, 97, 163, 766, 1036, 1060, 1114, 1675, 1914
Sau96I GGNCC 4 cut(s) 73, 356, 942, 1436
SchI GAGTC 3 cut(s) 13, 1451, 1625
ScrFI CCNGG 5 cut(s) 508, 516, 1434, 1912, 2016
SduI GDGCHC 3 cut(s) 14, 508, 980
SexAI ACCWGGT 1 cut(s) 1432
SfaNI GCATC 5 cut(s) 556, 1582, 1612, 1645, 1755
SfcI CTRYAG 2 cut(s) 1424, 1586
Sfr303I CCGCGG 1 cut(s) 527
SgrBI CCGCGG 1 cut(s) 527
SinI GGWCC 4 cut(s) 73, 356, 942, 1436
SmlI CTYRAG 3 cut(s) 128, 597, 1475
SmoI CTYRAG 3 cut(s) 128, 597, 1475
SsiI CCGC 7 cut(s) 29, 186, 203, 524, 526, 677, 1625
SspMI CTAG 7 cut(s) 770, 830, 909, 924, 1745, 1865, 2090
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 5 cut(s) 506, 514, 1432, 1910, 2014
StyI CCWWGG 2 cut(s) 54, 291
TaaI ACNGT 6 cut(s) 750, 1225, 1268, 1490, 1639, 1990
TaiI ACGT 4 cut(s) 505, 608, 1157, 1819
TaqI TCGA 3 cut(s) 24, 96, 366
TatI WGTACW 1 cut(s) 810
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 4 cut(s) 368, 484, 634, 653
TscAI CASTG 4 cut(s) 540, 1251, 1602, 1644
TseFI GTSAC 5 cut(s) 216, 1072, 1161, 1181, 1219
TseI GCWGC 1 cut(s) 1423
Tsp45I GTSAC 5 cut(s) 216, 1072, 1161, 1181, 1219
TspDTI ATGAA 9 cut(s) 426, 546, 585, 675, 938, 1200, 1776, 1901, 2015
TspGWI ACGGA 1 cut(s) 779
TspRI CASTG 4 cut(s) 540, 1251, 1602, 1644
Vha464I CTTAAG 1 cut(s) 1475
VpaK11BI GGWCC 4 cut(s) 73, 356, 942, 1436
XapI RAATTY 4 cut(s) 519, 820, 851, 1232
XbaI TCTAGA 2 cut(s) 769, 1744
XceI RCATGY 1 cut(s) 1605
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 2035
XspI CTAG 7 cut(s) 770, 830, 909, 924, 1745, 1865, 2090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.