Rmu_co8287763.1_g000001

Domain of unknown function (DUF4220)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8287763.1
OG0000618
Physical Location & Seq
Reverse (-)
387 .. 629
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8287763.1_g000001.1.cds

Sequence Viewer

Length: 243 bp
atgctccctcctcctgatccaggccccaactacgccagatacatgaatgagttccgctctaaggaatctgaaggcttcaaggttgagttagggagagtgattgaaactcctaaagtcggttattattcccatacagctccaagaaacatttttccgaatgcagccaatctgcaagatgcccatcttttcttcaatatcttcaaagcgctgtttgctgatctcatactcgatcaacatccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4220 DUF594

Protein Analysis

80

Amino Acids

9.16

Weight (kDa)

6.25

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04580 FvH4_3g37050 FvH4_3g37060 FvH4_4g30270 FvH4_6g34780 FvH4_6g34780
malus_domestica MD11G1092500.v1.1 MD17G1025500.v1.1
prunus_persica Prupe.1G206300_v2.0.a1 Prupe.3G040700_v2.0.a1 Prupe.3G040900_v2.0.a1 Prupe.3G041300_v2.0.a1 Prupe.3G041600_v2.0.a1 Prupe.3G061600_v2.0.a1 Prupe.4G109300_v2.0.a1 Prupe.6G069600_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.8G014800_v2.0.a1 Prupe.8G037600_v2.0.a1
pyrus_communis pycom09g10050 pycom17g16040
rosa_chinensis RchiOBHm_Chr2g0145601 RchiOBHm_Chr5g0066461 RchiOBHm_Chr5g0066471 RchiOBHm_Chr5g0066481
rosa_laevigata RLG00000019691 RLG00000020148 RLG00000020153 RLG00000035869 RLG00000035878 RLG00000035880
rosa_multiflora Rmu_co8287763.1_g000001 Rmu_co8480723.1_g000001 Rmu_co8493537.1_g000001 Rmu_sc0002170.1_g000044 Rmu_sc0002599.1_g000001 Rmu_sc0002718.1_g000013 Rmu_sc0003046.1_g000008 Rmu_sc0007761.1_g000002
rosa_roxburghii Rroxscaffold_152G00434590 Rroxscaffold_1G00014400 Rroxscaffold_1G00014410 Rroxscaffold_1G00014570 Rroxscaffold_2G00100650 Rroxscaffold_2G00106640
rosa_rugosa Rorug02G0392200 Rorug02G0392400 Rorug05G0378500 Rorug05G0378500 Rorug05G0378500
rosa_samantha Rh2AG446400 Rh2AG446500 Rh2BG457100 Rh2BG457200 Rh2BG457300 Rh2BG458200 Rh2CG432200 Rh2CG433100 Rh2CG433200 Rh2DG466800 Rh2DG466900 Rh2DG467000 Rh2DG467800 Rh3DG193900 Rh5AG437600 Rh5AG437700 Rh5AG437800 Rh5BG453700 Rh5DG468800 Rh7AG352500 Rh7CG369800 Rh7DG349000
rosa_wichuraiana Rw2G036410 Rw2G036460 Rw3G014910 Rw5G040940 Rw7G029760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 57
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 90
AfeI AGCGCT 1 cut(s) 207
AfiI CCNNNNNNNGG 3 cut(s) 20, 61, 116
AgsI TTSAA 4 cut(s) 79, 104, 193, 202
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 1 cut(s) 11
Aor51HI AGCGCT 1 cut(s) 207
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 209
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BsaBI GATNNNNATC 2 cut(s) 180, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 61, 116
Bse8I GATNNNNATC 2 cut(s) 180, 234
BseBI CCWGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 2 cut(s) 180, 234
BseLI CCNNNNNNNGG 3 cut(s) 20, 61, 116
BseXI GCAGC 1 cut(s) 173
BshFI GGCC 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 20, 61, 116
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 16, 217, 229
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 57
BssMI GATC 3 cut(s) 16, 217, 229
Bst2UI CCWGG 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 19, 220, 232
BstMBI GATC 3 cut(s) 16, 217, 229
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 235
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 2 cut(s) 43, 240
CviJI RGCY 4 cut(s) 24, 75, 137, 164
CviKI_1 RGCY 4 cut(s) 24, 75, 137, 164
DdeI CTNAG 1 cut(s) 60
DpnI GATC 3 cut(s) 18, 219, 231
DpnII GATC 3 cut(s) 16, 217, 229
Eco47III AGCGCT 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 19
FaeI CATG 2 cut(s) 46, 243
FaiI YATR 4 cut(s) 44, 132, 224, 241
FatI CATG 2 cut(s) 42, 239
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 162
GlaI GCGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 1 cut(s) 24
HhaI GCGC 1 cut(s) 208
Hin1II CATG 2 cut(s) 46, 243
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 70, 156
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 161, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 46, 243
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 3 cut(s) 16, 217, 229
LmnI GCTCC 2 cut(s) 9, 142
LpnPI CCDG 4 cut(s) 6, 27, 33, 49
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 1 cut(s) 166
MalI GATC 3 cut(s) 18, 219, 231
MbiI CCGCTC 1 cut(s) 57
MboI GATC 3 cut(s) 16, 217, 229
MboII GAAGA 2 cut(s) 181, 190
MnlI CCTC 2 cut(s) 18, 21
MroXI GAANNNNTTC 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 3 cut(s) 16, 217, 229
NlaIII CATG 2 cut(s) 46, 243
NlaIV GGNNCC 1 cut(s) 25
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 23
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 3 cut(s) 16, 217, 229
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 21
SetI ASST 2 cut(s) 84, 139
SfaNI GCATC 1 cut(s) 166
SgeI CNNG 9 cut(s) 26, 32, 33, 48, 55, 91, 153, 185, 239
SsiI CCGC 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 19
TaqI TCGA 1 cut(s) 228
TfiI GAWTC 1 cut(s) 65
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 59
XagI CCTNNNNNAGG 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.