Rmu_sc0002170.1_g000044

Domain of unknown function (DUF4220)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002170.1
OG0000618
Physical Location & Seq
Forward (+)
193390 .. 196429
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002170.1_g000044.1.cds

Sequence Viewer

Length: 2304 bp
atgcaacaacagtcaagtggctggttctgggtaaaatttttcccgttcttagattctgggatagagataatgcctgtggaaaaatttggtagcaattgggggtttccggccggttcttggggtggcgccgccggttctggactcctaggatggagggcttcaagacgtgcggcggggaacgaaagggagatcaaggcagggcttctgaaaatattttcagatatagtaggatcattttggaacgaatgggagctccgcataatggttctgtcaagccttgttctacagcttttccttctcaaattcgggaaccgatggacgaggccaagcatctggttatcagccagtgtttggtgctcatacatgctagcagattgggttgcatccgttgcgctgagcacccttttcagtaggagtggagaactccaagccaaatcttcagaaccaaaatatgcaatcatggcattttggggtcccttccttctcctacacattggtggcccggataccatcactgcctattcattggatgataatgatttatggttaagacgcctgattgcgctagcgttacaaggtctaatagcttcatacgtctgcttcttagttacaaccagcaccactgcccttggacttgtggctattcctgttcttattgctggaattatcaagtgcggggagagaacatggattctttggactgcaagtggcggacagtttaggaactcgttgttcaaggatttccccgaaccaaaacctagtgatccacgagacggtgatctagaatcccaacatactcgtaacatagggtacgggggtttggattcacagattggcgacaaaatcctcccggaggcacaatatcttcatgaagcggaaatattgttcggtttgttcaagtttctcattgcaaacatatcgttcaagttcaaaactgatgcctatagctctttcacaatatcgggcaagggacctgttgaggccttcaaactaatagaggttgagctaggcttcatgtatgatattctctacaccaaggcaagcctgatgcaatccccttggggcctgattttccgctccattagcttgttgtgctctatttctgcgttagtggccttcatggttgtcgtcaatattgacccttattcaaaaattaagcatacaattgatggggccgtaacttacatactactagttggagctattgtgcttgatacgcatggggcgttgacacatgttttttccaattggacattgctccggctgtccaagaaccggaaaaacaagtggaaatgttccatttatcgtcgtatcgctcggtggtcaggtgcaaattgtgataatagaaaaaaattgttcatcccacagctgaactttattcacttttgtctgggtagtgtgaaggtcagcgataattataagctgattaagctctatgatgcatgttatagatacctcgggttgtaccggaatatgacctttaccactgtggatgataagttaaagaaacggattcactcgcatctccaagtgatgcaaacaaggtatggattccattcatttgactttgggtatctgaggagtttattggacgagagaggtcttcattcacttattactttgctgcatactggtcattatgaattcttgaaacaaacactgcagaaagaatttgaccacagccttcttgtgtggcacattgccactcatctctgctaccatgatgatccgaacgaaaaaaaatcatcatcacggcaagatagcaaagcgttgtctgattatatgttctatcttgtcatattgcatccaaccatgctgcctaatgggattagtgacttgaggattcaacatacgcgcagagtggcccatagatatctccaacaactaataaggaagggggatgagactaatgagagtgacgcttgcagtaagttgcttctgttccccgatgaacatcaagatttgatgagaattgatgctcgacacaagtctgtgctaggtgacgcaattagggttgccaaggtactaaaggaaattcctgagcggtggaaattgataataagtgtgtgggtggagatgttgagctattcagcaactcattgttcatggaagcagcatgcggtacggcttggagaaggaggagaactactcactcatgtccggcttcttatgacacaatcaggtttgactgaacaaatccaccgagcggaccctaaaaaaattgatgacgatgaagttgagaatttccaagcgcagattaaggactctgattgggcttccatttgtctctcttccttagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4220 DUF594

Protein Analysis

767

Amino Acids

87.34

Weight (kDa)

8.87

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04580 FvH4_3g37050 FvH4_3g37060 FvH4_4g30270 FvH4_6g34780 FvH4_6g34780
malus_domestica MD11G1092500.v1.1 MD17G1025500.v1.1
prunus_persica Prupe.1G206300_v2.0.a1 Prupe.3G040700_v2.0.a1 Prupe.3G040900_v2.0.a1 Prupe.3G041300_v2.0.a1 Prupe.3G041600_v2.0.a1 Prupe.3G061600_v2.0.a1 Prupe.4G109300_v2.0.a1 Prupe.6G069600_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.8G014800_v2.0.a1 Prupe.8G037600_v2.0.a1
pyrus_communis pycom09g10050 pycom17g16040
rosa_chinensis RchiOBHm_Chr2g0145601 RchiOBHm_Chr5g0066461 RchiOBHm_Chr5g0066471 RchiOBHm_Chr5g0066481
rosa_laevigata RLG00000019691 RLG00000020148 RLG00000020153 RLG00000035869 RLG00000035878 RLG00000035880
rosa_multiflora Rmu_co8287763.1_g000001 Rmu_co8480723.1_g000001 Rmu_co8493537.1_g000001 Rmu_sc0002170.1_g000044 Rmu_sc0002599.1_g000001 Rmu_sc0002718.1_g000013 Rmu_sc0003046.1_g000008 Rmu_sc0007761.1_g000002
rosa_roxburghii Rroxscaffold_152G00434590 Rroxscaffold_1G00014400 Rroxscaffold_1G00014410 Rroxscaffold_1G00014570 Rroxscaffold_2G00100650 Rroxscaffold_2G00106640
rosa_rugosa Rorug02G0392200 Rorug02G0392400 Rorug05G0378500 Rorug05G0378500 Rorug05G0378500
rosa_samantha Rh2AG446400 Rh2AG446500 Rh2BG457100 Rh2BG457200 Rh2BG457300 Rh2BG458200 Rh2CG432200 Rh2CG433100 Rh2CG433200 Rh2DG466800 Rh2DG466900 Rh2DG467000 Rh2DG467800 Rh3DG193900 Rh5AG437600 Rh5AG437700 Rh5AG437800 Rh5BG453700 Rh5DG468800 Rh7AG352500 Rh7CG369800 Rh7DG349000
rosa_wichuraiana Rw2G036410 Rw2G036460 Rw3G014910 Rw5G040940 Rw7G029760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1419
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 351
AccBSI CCGCTC 3 cut(s) 1077, 2044, 2207
AccII CGCG 1 cut(s) 1855
AclWI GGATC 3 cut(s) 238, 758, 1721
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 7 cut(s) 35, 83, 302, 1643, 1670, 2034, 2242
AcuI CTGAAG 1 cut(s) 423
AcyI GRCGYC 2 cut(s) 126, 553
AfaI GTAC 4 cut(s) 812, 1466, 2025, 2124
AfiI CCNNNNNNNGG 7 cut(s) 117, 262, 351, 773, 853, 1275, 2206
AflIII ACRYGT 1 cut(s) 1234
AgsI TTSAA 9 cut(s) 162, 736, 898, 925, 931, 988, 1149, 1651, 1847
AhlI ACTAGT 1 cut(s) 1192
AjiI CACGTC 1 cut(s) 167
AleI CACNNNNGTG 1 cut(s) 495
AloI GAACNNNNNNTCC 2 cut(s) 869, 901
Alw21I GWGCWC 4 cut(s) 255, 359, 401, 1097
Alw26I GTCTC 3 cut(s) 765, 1898, 2291
AlwI GGATC 3 cut(s) 238, 758, 1721
Ama87I CYCGRG 1 cut(s) 1457
AoxI GGCC 8 cut(s) 108, 323, 499, 981, 1063, 1113, 1173, 1863
ApeKI GCWGC 3 cut(s) 1624, 1816, 2113
ApoI RAATTY 7 cut(s) 35, 83, 302, 1643, 1670, 2034, 2242
AspA2I CCTAGG 1 cut(s) 145
AspLEI GCGC 5 cut(s) 128, 394, 565, 1857, 2254
AspS9I GGNCC 7 cut(s) 473, 500, 971, 1063, 1173, 1864, 2209
AsuC2I CCSGG 2 cut(s) 503, 851
AsuHPI GGTGA 2 cut(s) 788, 2012
AsuNHI GCTAGC 2 cut(s) 367, 565
AvaI CYCGRG 1 cut(s) 1457
AvaII GGWCC 3 cut(s) 473, 971, 2209
AvrII CCTAGG 1 cut(s) 145
BaeI ACNNNNGTAYC 2 cut(s) 802, 835
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 255
BauI CACGAG 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 1595
Bbv12I GWGCWC 4 cut(s) 255, 359, 401, 1097
BbvI GCAGC 3 cut(s) 1611, 1803, 2125
BccI CCATC 4 cut(s) 144, 309, 518, 1163
BceAI ACGGC 3 cut(s) 1160, 1769, 2141
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BciVI GTATCC 1 cut(s) 499
BcnI CCSGG 2 cut(s) 503, 851
BcoDI GTCTC 3 cut(s) 765, 1898, 2291
BcuI ACTAGT 1 cut(s) 1192
BfaI CTAG 8 cut(s) 146, 368, 566, 759, 782, 1007, 1193, 1997
BfmI CTRYAG 3 cut(s) 284, 943, 1661
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 5 cut(s) 129, 171, 1625, 1817, 2114
BlnI CCTAGG 1 cut(s) 145
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 5 cut(s) 130, 172, 1626, 1818, 2115
Bme1390I CCNGG 2 cut(s) 503, 851
Bme18I GGWCC 3 cut(s) 473, 971, 2209
BmeT110I CYCGRG 1 cut(s) 1457
BmgBI CACGTC 1 cut(s) 167
BmgT120I GGNCC 7 cut(s) 473, 500, 971, 1063, 1173, 1864, 2209
BmiI GGNNCC 8 cut(s) 127, 311, 474, 475, 972, 1064, 1174, 2211
BmrFI CCNGG 2 cut(s) 503, 851
BmsI GCATC 9 cut(s) 339, 392, 928, 1038, 1429, 1524, 1531, 1813, 1966
BmtI GCTAGC 2 cut(s) 371, 569
BoxI GACNNNNGTC 1 cut(s) 1987
BpiI GAAGAC 1 cut(s) 1595
BplI GAGNNNNNCTC 2 cut(s) 2133, 2165
Bpu10I CCTNAGC 2 cut(s) 2040, 2296
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 1858
BpuMI CCSGG 2 cut(s) 503, 851
BsaBI GATNNNNATC 1 cut(s) 1953
BsaHI GRCGYC 2 cut(s) 126, 553
BsaJI CCNNGG 6 cut(s) 145, 628, 1035, 1058, 1456, 2019
BsaWI WCCGGW 2 cut(s) 1275, 1467
BsaXI ACNNNNNCTCC 2 cut(s) 1191, 1221
Bsc4I CCNNNNNNNGG 7 cut(s) 117, 262, 351, 773, 853, 1275, 2206
Bse118I RCCGGY 2 cut(s) 110, 131
Bse1I ACTGG 2 cut(s) 345, 1636
Bse3DI GCAATG 3 cut(s) 906, 1253, 1698
Bse8I GATNNNNATC 1 cut(s) 1953
BseDI CCNNGG 6 cut(s) 145, 628, 1035, 1058, 1456, 2019
BseGI GGATG 7 cut(s) 155, 383, 535, 1359, 1498, 1804, 1906
BseJI GATNNNNATC 1 cut(s) 1953
BseLI CCNNNNNNNGG 7 cut(s) 117, 262, 351, 773, 853, 1275, 2206
BseMI GCAATG 3 cut(s) 906, 1253, 1698
BseMII CTCAG 3 cut(s) 386, 1568, 2031
BseNI ACTGG 2 cut(s) 345, 1636
BseRI GAGGAG 2 cut(s) 1594, 2154
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 1611, 1803, 2125
Bsh1236I CGCG 1 cut(s) 1855
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 8 cut(s) 110, 325, 501, 983, 1065, 1115, 1175, 1865
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 4 cut(s) 255, 359, 401, 1097
BsiHKCI CYCGRG 1 cut(s) 1457
BsiSI CCGG 9 cut(s) 107, 111, 132, 503, 851, 1261, 1276, 1468, 2161
BslFI GGGAC 2 cut(s) 459, 984
BslI CCNNNNNNNGG 7 cut(s) 117, 262, 351, 773, 853, 1275, 2206
BsmAI GTCTC 3 cut(s) 765, 1898, 2291
BsmBI CGTCTC 1 cut(s) 765
BsmFI GGGAC 2 cut(s) 459, 984
BsnI GGCC 8 cut(s) 110, 325, 501, 983, 1065, 1115, 1175, 1865
BsoBI CYCGRG 1 cut(s) 1457
Bsp1286I GDGCHC 4 cut(s) 255, 359, 401, 1097
Bsp143I GATC 5 cut(s) 189, 230, 763, 778, 1726
Bsp1720I GCTNAGC 1 cut(s) 395
BspANI GGCC 8 cut(s) 110, 325, 501, 983, 1065, 1115, 1175, 1865
BspCNI CTCAG 3 cut(s) 387, 1569, 2032
BspFNI CGCG 1 cut(s) 1855
BspHI TCATGA 1 cut(s) 868
BspLI GGNNCC 8 cut(s) 127, 311, 474, 475, 972, 1064, 1174, 2211
BspMAI CTGCAG 1 cut(s) 1665
BspOI GCTAGC 2 cut(s) 371, 569
BspPI GGATC 3 cut(s) 238, 758, 1721
BspT107I GGYRCC 1 cut(s) 125
BsrBI CCGCTC 3 cut(s) 1077, 2044, 2207
BsrDI GCAATG 3 cut(s) 906, 1253, 1698
BsrFI RCCGGY 2 cut(s) 110, 131
BsrI ACTGG 2 cut(s) 345, 1636
BssAI RCCGGY 2 cut(s) 110, 131
BssECI CCNNGG 6 cut(s) 145, 628, 1035, 1058, 1456, 2019
BssMI GATC 5 cut(s) 189, 230, 763, 778, 1726
BssNI GRCGYC 2 cut(s) 126, 553
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 5 cut(s) 145, 628, 1035, 1058, 2019
Bst2BI CACGAG 1 cut(s) 768
Bst4CI ACNGT 4 cut(s) 12, 717, 776, 1489
Bst6I CTCTTC 1 cut(s) 2296
BstACI GRCGYC 2 cut(s) 126, 553
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 5 cut(s) 369, 567, 1042, 1924, 2118
BstDEI CTNAG 6 cut(s) 49, 395, 604, 1577, 2040, 2296
BstENI CCTNNNNNAGG 1 cut(s) 851
BstF5I GGATG 7 cut(s) 155, 383, 535, 1359, 1498, 1804, 1906
BstFNI CGCG 1 cut(s) 1855
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 5 cut(s) 128, 394, 565, 1857, 2254
BstKTI GATC 5 cut(s) 192, 233, 766, 781, 1729
BstMAI GTCTC 3 cut(s) 765, 1898, 2291
BstMBI GATC 5 cut(s) 189, 230, 763, 778, 1726
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 7 cut(s) 389, 461, 1083, 1092, 1112, 1216, 1429
BstNSI RCATGY 4 cut(s) 367, 1238, 1446, 2120
BstPAI GACNNNNGTC 1 cut(s) 1987
BstSCI CCNGG 2 cut(s) 501, 849
BstSFI CTRYAG 3 cut(s) 284, 943, 1661
BstUI CGCG 1 cut(s) 1855
BstV1I GCAGC 3 cut(s) 1611, 1803, 2125
BstV2I GAAGAC 1 cut(s) 1595
BstXI CCANNNNNNTGG 1 cut(s) 333
BstZI CGGCCG 1 cut(s) 108
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 8 cut(s) 110, 325, 501, 983, 1065, 1115, 1175, 1865
BtrI CACGTC 1 cut(s) 167
BtsCI GGATG 7 cut(s) 155, 383, 535, 1359, 1498, 1804, 1906
BtsI GCAGTG 3 cut(s) 513, 621, 1658
BtsIMutI CAGTG 5 cut(s) 352, 513, 621, 1485, 1658
Cac8I GCNNGC 5 cut(s) 369, 567, 1042, 1924, 2118
CciI TCATGA 1 cut(s) 868
CfoI GCGC 5 cut(s) 128, 394, 565, 1857, 2254
Cfr10I RCCGGY 2 cut(s) 110, 131
Cfr13I GGNCC 7 cut(s) 473, 500, 971, 1063, 1173, 1864, 2209
CseI GACGC 3 cut(s) 561, 1928, 2012
Csp6I GTAC 4 cut(s) 811, 1465, 2024, 2123
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviQI GTAC 4 cut(s) 811, 1465, 2024, 2123
DdeI CTNAG 6 cut(s) 49, 395, 604, 1577, 2040, 2296
DinI GGCGCC 1 cut(s) 127
DpnI GATC 5 cut(s) 191, 232, 765, 780, 1728
DpnII GATC 5 cut(s) 189, 230, 763, 778, 1726
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 2296
EarI CTCTTC 1 cut(s) 2296
EciI GGCGGA 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 253
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 5 cut(s) 145, 628, 1035, 1058, 2019
Eco147I AGGCCT 1 cut(s) 983
Eco24I GRGCYC 1 cut(s) 255
Eco32I GATATC 1 cut(s) 1874
Eco47I GGWCC 3 cut(s) 473, 971, 2209
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 1457
EcoICRI GAGCTC 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 851
EcoO109I RGGNCCY 3 cut(s) 473, 971, 1063
EcoRI GAATTC 1 cut(s) 1643
EcoRV GATATC 1 cut(s) 1874
EcoT14I CCWWGG 5 cut(s) 145, 628, 1035, 1058, 2019
EcoT22I ATGCAT 1 cut(s) 1444
EcoT38I GRGCYC 1 cut(s) 255
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 5 cut(s) 145, 628, 1035, 1058, 2019
Esp3I CGTCTC 1 cut(s) 765
FaqI GGGAC 2 cut(s) 459, 984
FauI CCCGC 2 cut(s) 166, 668
Fnu4HI GCNGC 5 cut(s) 129, 171, 1625, 1817, 2114
FokI GGATG 7 cut(s) 162, 370, 542, 1346, 1505, 1791, 1913
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 5 cut(s) 129, 171, 1625, 1817, 2114
FspBI CTAG 8 cut(s) 146, 368, 566, 759, 782, 1007, 1193, 1997
GlaI GCGC 5 cut(s) 127, 393, 564, 1856, 2253
GluI GCNGC 5 cut(s) 129, 171, 1625, 1817, 2114
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 8 cut(s) 110, 325, 501, 983, 1065, 1115, 1175, 1865
HapII CCGG 9 cut(s) 107, 111, 132, 503, 851, 1261, 1276, 1468, 2161
HgaI GACGC 3 cut(s) 561, 1928, 2012
HhaI GCGC 5 cut(s) 128, 394, 565, 1857, 2254
Hin1I GRCGYC 2 cut(s) 126, 553
Hin6I GCGC 5 cut(s) 126, 392, 563, 1855, 2252
HinP1I GCGC 5 cut(s) 126, 392, 563, 1855, 2252
HincII GTYRAC 1 cut(s) 1230
HindII GTYRAC 1 cut(s) 1230
HinfI GANTC 9 cut(s) 53, 141, 691, 785, 824, 1513, 1551, 1843, 2264
HpaII CCGG 9 cut(s) 107, 111, 132, 503, 851, 1261, 1276, 1468, 2161
HphI GGTGA 2 cut(s) 788, 2012
Hpy166II GTNNAC 1 cut(s) 1230
Hpy188I TCNGA 7 cut(s) 207, 220, 442, 1578, 1731, 1777, 2269
Hpy188III TCNNGA 8 cut(s) 138, 162, 307, 782, 869, 1648, 1958, 2039
Hpy8I GTNNAC 1 cut(s) 1230
Hpy99I CGWCG 1 cut(s) 1311
HpyAV CCTTC 9 cut(s) 305, 487, 491, 994, 1126, 1396, 1694, 1888, 2129
HpyCH4III ACNGT 4 cut(s) 12, 717, 776, 1489
HpyCH4IV ACGT 2 cut(s) 166, 594
HpyF10VI GCNNNNNNNGC 7 cut(s) 389, 461, 1083, 1092, 1112, 1216, 1429
HpyF3I CTNAG 6 cut(s) 49, 395, 604, 1577, 2040, 2296
HpySE526I ACGT 2 cut(s) 166, 594
Hsp92I GRCGYC 2 cut(s) 126, 553
HspAI GCGC 5 cut(s) 126, 392, 563, 1855, 2252
KasI GGCGCC 1 cut(s) 125
KflI GGGWCCC 1 cut(s) 473
Kzo9I GATC 5 cut(s) 189, 230, 763, 778, 1726
LmnI GCTCC 5 cut(s) 250, 258, 1082, 1199, 1263
Lsp1109I GCAGC 3 cut(s) 1611, 1803, 2125
LweI GCATC 9 cut(s) 339, 392, 928, 1038, 1429, 1524, 1531, 1813, 1966
MaeI CTAG 8 cut(s) 146, 368, 566, 759, 782, 1007, 1193, 1997
MaeII ACGT 2 cut(s) 166, 594
MaeIII GTNAC 7 cut(s) 570, 607, 800, 1177, 1832, 1916, 2000
MalI GATC 5 cut(s) 191, 232, 765, 780, 1728
MbiI CCGCTC 3 cut(s) 1077, 2044, 2207
MboI GATC 5 cut(s) 189, 230, 763, 778, 1726
MboII GAAGA 4 cut(s) 429, 857, 1595, 2283
MfeI CAATTG 3 cut(s) 94, 1164, 1246
MhlI GDGCHC 4 cut(s) 255, 359, 401, 1097
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 2 cut(s) 135, 2258
MmeI TCCRAC 3 cut(s) 1177, 1832, 1903
Mph1103I ATGCAT 1 cut(s) 1444
MseI TTAA 6 cut(s) 548, 1155, 1428, 1502, 2259, 2302
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 1369
MspI CCGG 9 cut(s) 107, 111, 132, 503, 851, 1261, 1276, 1468, 2161
MspR9I CCNGG 2 cut(s) 503, 851
MunI CAATTG 3 cut(s) 94, 1164, 1246
MvnI CGCG 1 cut(s) 1855
MwoI GCNNNNNNNGC 7 cut(s) 389, 461, 1083, 1092, 1112, 1216, 1429
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 2 cut(s) 503, 851
NdeII GATC 5 cut(s) 189, 230, 763, 778, 1726
NheI GCTAGC 2 cut(s) 367, 565
NlaIV GGNNCC 8 cut(s) 127, 311, 474, 475, 972, 1064, 1174, 2211
NmuCI GTSAC 3 cut(s) 1832, 1916, 2000
NsiI ATGCAT 1 cut(s) 1444
NspI RCATGY 4 cut(s) 367, 1238, 1446, 2120
OliI CACNNNNGTG 1 cut(s) 495
PaeI GCATGC 1 cut(s) 2120
PagI TCATGA 1 cut(s) 868
PceI AGGCCT 1 cut(s) 983
PciI ACATGT 1 cut(s) 1234
PcsI WCGNNNNNNNCGW 1 cut(s) 1223
PfeI GAWTC 7 cut(s) 53, 691, 785, 824, 1513, 1551, 1843
PflMI CCANNNNNTGG 1 cut(s) 351
PfoI TCCNGGA 1 cut(s) 849
PkrI GCNGC 5 cut(s) 130, 172, 1626, 1818, 2115
PleI GAGTC 2 cut(s) 135, 2258
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 2 cut(s) 135, 2258
PpuMI RGGWCCY 2 cut(s) 473, 971
PscI ACATGT 1 cut(s) 1234
PshAI GACNNNNGTC 1 cut(s) 1987
PsiI TTATAA 1 cut(s) 1419
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 2 cut(s) 473, 971
PspN4I GGNNCC 8 cut(s) 127, 311, 474, 475, 972, 1064, 1174, 2211
PspPI GGNCC 7 cut(s) 473, 500, 971, 1063, 1173, 1864, 2209
PspPPI RGGWCCY 2 cut(s) 473, 971
PstI CTGCAG 1 cut(s) 1665
PvuII CAGCTG 1 cut(s) 1369
RsaI GTAC 4 cut(s) 812, 1466, 2025, 2124
RsaNI GTAC 4 cut(s) 811, 1465, 2024, 2123
RseI CAYNNNNRTG 1 cut(s) 495
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 6 cut(s) 548, 1155, 1428, 1502, 2259, 2302
SatI GCNGC 5 cut(s) 129, 171, 1625, 1817, 2114
Sau3AI GATC 5 cut(s) 189, 230, 763, 778, 1726
Sau96I GGNCC 7 cut(s) 473, 500, 971, 1063, 1173, 1864, 2209
SchI GAGTC 2 cut(s) 135, 2258
ScrFI CCNGG 2 cut(s) 503, 851
SduI GDGCHC 4 cut(s) 255, 359, 401, 1097
SfaNI GCATC 9 cut(s) 339, 392, 928, 1038, 1429, 1524, 1531, 1813, 1966
SfcI CTRYAG 3 cut(s) 284, 943, 1661
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 3 cut(s) 473, 971, 2209
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 1837
SmoI CTYRAG 1 cut(s) 1837
SpeI ACTAGT 1 cut(s) 1192
SphI GCATGC 1 cut(s) 2120
SseBI AGGCCT 1 cut(s) 983
SspDI GGCGCC 1 cut(s) 125
SspI AATATT 3 cut(s) 213, 882, 1135
SspMI CTAG 8 cut(s) 146, 368, 566, 759, 782, 1007, 1193, 1997
SstI GAGCTC 1 cut(s) 255
StuI AGGCCT 1 cut(s) 983
StyD4I CCNGG 2 cut(s) 501, 849
StyI CCWWGG 5 cut(s) 145, 628, 1035, 1058, 2019
TaaI ACNGT 4 cut(s) 12, 717, 776, 1489
TaiI ACGT 2 cut(s) 169, 597
TaqI TCGA 1 cut(s) 1981
TauI GCSGC 2 cut(s) 131, 173
TfiI GAWTC 7 cut(s) 53, 691, 785, 824, 1513, 1551, 1843
Tru1I TTAA 6 cut(s) 548, 1155, 1428, 1502, 2259, 2302
Tru9I TTAA 6 cut(s) 548, 1155, 1428, 1502, 2259, 2302
TscAI CASTG 5 cut(s) 352, 520, 628, 1492, 1665
TseFI GTSAC 3 cut(s) 1832, 1916, 2000
TseI GCWGC 3 cut(s) 1624, 1816, 2113
Tsp45I GTSAC 3 cut(s) 1832, 1916, 2000
TspGWI ACGGA 2 cut(s) 376, 1525
TspRI CASTG 5 cut(s) 352, 520, 628, 1492, 1665
Van91I CCANNNNNTGG 1 cut(s) 351
VpaK11BI GGWCC 3 cut(s) 473, 971, 2209
XagI CCTNNNNNAGG 1 cut(s) 851
XapI RAATTY 7 cut(s) 35, 83, 302, 1643, 1670, 2034, 2242
XbaI TCTAGA 1 cut(s) 781
XceI RCATGY 4 cut(s) 367, 1238, 1446, 2120
XmaJI CCTAGG 1 cut(s) 145
XspI CTAG 8 cut(s) 146, 368, 566, 759, 782, 1007, 1193, 1997
Zsp2I ATGCAT 1 cut(s) 1444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.