Rroxscaffold_2G00106640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000618
Physical Location & Seq
Reverse (-)
30223670 .. 30231731
8062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106640.1

Sequence Viewer

Length: 423 bp
ATGTCCCCGTGCTCAATGATGTTCCAATGCCCAATCGGGACCTGTACAAGAGCTTCTTTCGATGTTGATGGCCTCAATCGCTTGTTGACGTCACGGCGGCAAATGGTGAGGCAAGAACAAGACCCGATTGATCAAGCGATTGTGGCGCTGATTTCACCGATGGGAAAGACTCATGGGCTGGAAACCCAACAGGGGAGCGAACATAGATTCTTTAGACCGCAACATGCGGAACGGCTTGGAGAAGGAGGAGAACTACTCGATCGTTATGTCCGGCTTCTTATGACACATTTAAGTTTGATCGAACAAATCCACCGAGTGGTCCCTAAAAAAGTTGATGAGGATGAAGTTGAGGATTTCCAAGCACCGATTCCAAAGGGTAAGGACTCTAATTGGGTTTTCATTTGTCTCTCTTCCTTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.91

Weight (kDa)

5.93

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04580 FvH4_3g37050 FvH4_3g37060 FvH4_4g30270 FvH4_6g34780 FvH4_6g34780
malus_domestica MD11G1092500.v1.1 MD17G1025500.v1.1
prunus_persica Prupe.1G206300_v2.0.a1 Prupe.3G040700_v2.0.a1 Prupe.3G040900_v2.0.a1 Prupe.3G041300_v2.0.a1 Prupe.3G041600_v2.0.a1 Prupe.3G061600_v2.0.a1 Prupe.4G109300_v2.0.a1 Prupe.6G069600_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.8G014800_v2.0.a1 Prupe.8G037600_v2.0.a1
pyrus_communis pycom09g10050 pycom17g16040
rosa_chinensis RchiOBHm_Chr2g0145601 RchiOBHm_Chr5g0066461 RchiOBHm_Chr5g0066471 RchiOBHm_Chr5g0066481
rosa_laevigata RLG00000019691 RLG00000020148 RLG00000020153 RLG00000035869 RLG00000035878 RLG00000035880
rosa_multiflora Rmu_co8287763.1_g000001 Rmu_co8480723.1_g000001 Rmu_co8493537.1_g000001 Rmu_sc0002170.1_g000044 Rmu_sc0002599.1_g000001 Rmu_sc0002718.1_g000013 Rmu_sc0003046.1_g000008 Rmu_sc0007761.1_g000002
rosa_roxburghii Rroxscaffold_152G00434590 Rroxscaffold_1G00014400 Rroxscaffold_1G00014410 Rroxscaffold_1G00014570 Rroxscaffold_2G00100650 Rroxscaffold_2G00106640
rosa_rugosa Rorug02G0392200 Rorug02G0392400 Rorug05G0378500 Rorug05G0378500 Rorug05G0378500
rosa_samantha Rh2AG446400 Rh2AG446500 Rh2BG457100 Rh2BG457200 Rh2BG457300 Rh2BG458200 Rh2CG432200 Rh2CG433100 Rh2CG433200 Rh2DG466800 Rh2DG466900 Rh2DG467000 Rh2DG467800 Rh3DG193900 Rh5AG437600 Rh5AG437700 Rh5AG437800 Rh5BG453700 Rh5DG468800 Rh7AG352500 Rh7CG369800 Rh7DG349000
rosa_wichuraiana Rw2G036410 Rw2G036460 Rw3G014910 Rw5G040940 Rw7G029760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 316
AciI CCGC 3 cut(s) 97, 218, 227
AcyI GRCGYC 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 316
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 2 cut(s) 192, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AluBI AGCT 2 cut(s) 53, 419
AluI AGCT 2 cut(s) 53, 419
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 410
AoxI GGCC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 39, 319
AsuHPI GGTGA 2 cut(s) 118, 147
AvaII GGWCC 2 cut(s) 39, 319
BarI GAAGNNNNNNTAC 2 cut(s) 37, 69
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 2 cut(s) 62, 154
BceAI ACGGC 2 cut(s) 110, 248
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 410
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme18I GGWCC 2 cut(s) 39, 319
BmgT120I GGNCC 2 cut(s) 39, 319
BmiI GGNNCC 2 cut(s) 40, 321
BplI GAGNNNNNCTC 2 cut(s) 240, 272
Bpu10I CCTNAGC 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 316
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 192, 316
BseRI GAGGAG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 2 cut(s) 52, 305
BslI CCNNNNNNNGG 2 cut(s) 192, 316
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 2 cut(s) 52, 305
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 44
Bsp143I GATC 3 cut(s) 130, 259, 297
BspACI CCGC 3 cut(s) 97, 218, 227
BspANI GGCC 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 40, 321
BsrGI TGTACA 1 cut(s) 44
BssMI GATC 3 cut(s) 130, 259, 297
BssNI GRCGYC 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 415
BstACI GRCGYC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 415, 420
BstF5I GGATG 1 cut(s) 346
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 3 cut(s) 133, 262, 300
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 130, 259, 297
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 78, 143
BstNSI RCATGY 1 cut(s) 227
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 346
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 39, 319
Csp6I GTAC 1 cut(s) 45
CviAII CATG 2 cut(s) 173, 224
CviJI RGCY 6 cut(s) 53, 72, 178, 235, 274, 419
CviKI_1 RGCY 6 cut(s) 53, 72, 178, 235, 274, 419
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 2 cut(s) 415, 420
DpnI GATC 3 cut(s) 132, 261, 299
DpnII GATC 3 cut(s) 130, 259, 297
DraIII CACNNNGTG 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco47I GGWCC 2 cut(s) 39, 319
EcoO109I RGGNCCY 1 cut(s) 39
FaeI CATG 2 cut(s) 176, 227
FaiI YATR 5 cut(s) 174, 204, 225, 267, 281
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FaqI GGGAC 2 cut(s) 52, 305
FatI CATG 2 cut(s) 172, 223
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 98
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 176, 227
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 4 cut(s) 169, 207, 367, 383
HpaII CCGG 1 cut(s) 271
HphI GGTGA 2 cut(s) 118, 147
Hpy166II GTNNAC 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 143
HpyF3I CTNAG 2 cut(s) 415, 420
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 176, 227
HspAI GCGC 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 259, 297
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 4 cut(s) 55, 164, 176, 284
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 90
MalI GATC 3 cut(s) 132, 261, 299
MboI GATC 3 cut(s) 130, 259, 297
MboII GAAGA 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 388
MlyI GAGTC 2 cut(s) 163, 377
MnlI CCTC 5 cut(s) 83, 102, 239, 331, 343
MseI TTAA 1 cut(s) 290
MspI CCGG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 78, 143
NdeII GATC 3 cut(s) 130, 259, 297
NlaIII CATG 2 cut(s) 176, 227
NlaIV GGNNCC 2 cut(s) 40, 321
NmuCI GTSAC 1 cut(s) 90
NspI RCATGY 1 cut(s) 227
PfeI GAWTC 2 cut(s) 207, 367
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 1 cut(s) 99
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 2 cut(s) 163, 377
PpsI GAGTC 2 cut(s) 163, 377
PpuMI RGGWCCY 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 40, 321
PspPI GGNCC 2 cut(s) 39, 319
PspPPI RGGWCCY 1 cut(s) 39
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 3 cut(s) 130, 259, 297
Sau96I GGNCC 2 cut(s) 39, 319
SchI GAGTC 2 cut(s) 163, 377
SduI GDGCHC 1 cut(s) 14
SetI ASST 4 cut(s) 44, 55, 92, 421
SinI GGWCC 2 cut(s) 39, 319
Sse9I AATT 1 cut(s) 388
SsiI CCGC 3 cut(s) 97, 218, 227
TaiI ACGT 1 cut(s) 92
TaqI TCGA 3 cut(s) 60, 258, 300
TasI AATT 1 cut(s) 388
TatI WGTACW 1 cut(s) 44
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 2 cut(s) 207, 367
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 357, 388
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 39, 319
XceI RCATGY 1 cut(s) 227
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.