RchiOBHm_Chr5g0066461

Domain of unknown function (DUF4220)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000618
Physical Location & Seq
Reverse (-)
72621860 .. 72622270
411 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34223

Sequence Viewer

Length: 411 bp
ATGGTTCTAAGCAGCCTTTGCTTACAAATTATCCTCATACACTTTGGAAGCCGAAGAAAATTCAGTACCAGAAACTCGATGAGAATTATCACATGGATAGCCTACTTATCAGCGGATTGGGTTGCTATTGTCGCACTTGGAGTGATCTCCAACTTCCAAAGAGATTGTAACCAAGAAAATTCCTCTCATCCAAACAGCCAGATGATCATGGCTTTTTGGACCCCATTTCTTCTTGTGCACCTTGGCGGCCCAGACAGCATCACTGCTTATTCACTTGAAGACAATGAGCTCTGGTTAAGGCACCTCTTGGGCTTACTAGTCCAAGTTGCGGTTTCTTTATACATATTTTTAAGATCATGGACAGCTAGCACGTACCAGCTCTCACTTCTAGCATGGAATTATCAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4220 DUF594

Protein Analysis

136

Amino Acids

15.61

Weight (kDa)

7.86

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4220 PF13968 32 - 122 9.6e-35 Domain of unknown function (DUF4220)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04580 FvH4_3g37050 FvH4_3g37060 FvH4_4g30270 FvH4_6g34780 FvH4_6g34780
malus_domestica MD11G1092500.v1.1 MD17G1025500.v1.1
prunus_persica Prupe.1G206300_v2.0.a1 Prupe.3G040700_v2.0.a1 Prupe.3G040900_v2.0.a1 Prupe.3G041300_v2.0.a1 Prupe.3G041600_v2.0.a1 Prupe.3G061600_v2.0.a1 Prupe.4G109300_v2.0.a1 Prupe.6G069600_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.8G014800_v2.0.a1 Prupe.8G037600_v2.0.a1
pyrus_communis pycom09g10050 pycom17g16040
rosa_chinensis RchiOBHm_Chr2g0145601 RchiOBHm_Chr5g0066461 RchiOBHm_Chr5g0066471 RchiOBHm_Chr5g0066481
rosa_laevigata RLG00000019691 RLG00000020148 RLG00000020153 RLG00000035869 RLG00000035878 RLG00000035880
rosa_multiflora Rmu_co8287763.1_g000001 Rmu_co8480723.1_g000001 Rmu_co8493537.1_g000001 Rmu_sc0002170.1_g000044 Rmu_sc0002599.1_g000001 Rmu_sc0002718.1_g000013 Rmu_sc0003046.1_g000008 Rmu_sc0007761.1_g000002
rosa_roxburghii Rroxscaffold_152G00434590 Rroxscaffold_1G00014400 Rroxscaffold_1G00014410 Rroxscaffold_1G00014570 Rroxscaffold_2G00100650 Rroxscaffold_2G00106640
rosa_rugosa Rorug02G0392200 Rorug02G0392400 Rorug05G0378500 Rorug05G0378500 Rorug05G0378500
rosa_samantha Rh2AG446400 Rh2AG446500 Rh2BG457100 Rh2BG457200 Rh2BG457300 Rh2BG458200 Rh2CG432200 Rh2CG433100 Rh2CG433200 Rh2DG466800 Rh2DG466900 Rh2DG467000 Rh2DG467800 Rh3DG193900 Rh5AG437600 Rh5AG437700 Rh5AG437800 Rh5BG453700 Rh5DG468800 Rh7AG352500 Rh7CG369800 Rh7DG349000
rosa_wichuraiana Rw2G036410 Rw2G036460 Rw3G014910 Rw5G040940 Rw7G029760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 300
AciI CCGC 3 cut(s) 113, 246, 329
AcsI RAATTY 2 cut(s) 59, 178
AfaI GTAC 2 cut(s) 67, 374
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 316
AluBI AGCT 3 cut(s) 289, 365, 379
AluI AGCT 3 cut(s) 289, 365, 379
Alw21I GWGCWC 2 cut(s) 240, 291
Alw44I GTGCAC 1 cut(s) 236
AoxI GGCC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 2 cut(s) 59, 178
AspS9I GGNCC 2 cut(s) 219, 248
AsuNHI GCTAGC 1 cut(s) 365
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 240
BanI GGYRCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 2 cut(s) 240, 291
BbvI GCAGC 1 cut(s) 24
BclI TGATCA 1 cut(s) 204
BcuI ACTAGT 1 cut(s) 316
BfaI CTAG 3 cut(s) 317, 366, 389
BisI GCNGC 2 cut(s) 13, 247
BlsI GCNGC 2 cut(s) 14, 248
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 219, 248
BmiI GGNNCC 2 cut(s) 221, 302
BmsI GCATC 1 cut(s) 267
BmtI GCTAGC 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 2 cut(s) 240, 291
BslI CCNNNNNNNGG 1 cut(s) 328
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 240, 291
Bsp143I GATC 3 cut(s) 144, 204, 353
BspACI CCGC 3 cut(s) 113, 246, 329
BspANI GGCC 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 221, 302
BspOI GCTAGC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 3 cut(s) 144, 204, 353
BssT1I CCWWGG 1 cut(s) 241
BstAPI GCANNNNNTGC 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 3 cut(s) 147, 207, 356
BstMBI GATC 3 cut(s) 144, 204, 353
BstMWI GCNNNNNNNGC 3 cut(s) 18, 131, 255
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 219, 248
Csp6I GTAC 2 cut(s) 66, 373
CviAII CATG 4 cut(s) 93, 208, 357, 393
CviQI GTAC 2 cut(s) 66, 373
DdeI CTNAG 1 cut(s) 8
DpnI GATC 3 cut(s) 146, 206, 355
DpnII GATC 3 cut(s) 144, 204, 353
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 4 cut(s) 96, 211, 360, 396
FaiI YATR 8 cut(s) 38, 94, 209, 340, 344, 358, 394, 409
FatI CATG 4 cut(s) 92, 207, 356, 392
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 13, 247
FokI GGATG 1 cut(s) 174
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 2 cut(s) 13, 247
FspBI CTAG 3 cut(s) 317, 366, 389
GluI GCNGC 2 cut(s) 13, 247
HaeIII GGCC 1 cut(s) 249
Hin1II CATG 4 cut(s) 96, 211, 360, 396
Hpy166II GTNNAC 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 131, 255
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 4 cut(s) 96, 211, 360, 396
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 3 cut(s) 144, 204, 353
LpnPI CCDG 5 cut(s) 82, 212, 264, 277, 389
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 267
MaeI CTAG 3 cut(s) 317, 366, 389
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 167
MalI GATC 3 cut(s) 146, 206, 355
MboI GATC 3 cut(s) 144, 204, 353
MboII GAAGA 3 cut(s) 66, 221, 290
MhlI GDGCHC 2 cut(s) 240, 291
MluCI AATT 5 cut(s) 27, 59, 84, 178, 397
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 3 cut(s) 44, 193, 314
MseI TTAA 2 cut(s) 296, 350
MspA1I CMGCKG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 18, 131, 255
NdeII GATC 3 cut(s) 144, 204, 353
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 4 cut(s) 96, 211, 360, 396
NlaIV GGNNCC 2 cut(s) 221, 302
PkrI GCNGC 2 cut(s) 14, 248
Ppu21I YACGTR 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 221, 302
PspPI GGNCC 2 cut(s) 219, 248
RsaI GTAC 2 cut(s) 67, 374
RsaNI GTAC 2 cut(s) 66, 373
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 296, 350
SatI GCNGC 2 cut(s) 13, 247
Sau3AI GATC 3 cut(s) 144, 204, 353
Sau96I GGNCC 2 cut(s) 219, 248
SduI GDGCHC 2 cut(s) 240, 291
SetI ASST 6 cut(s) 243, 291, 306, 367, 374, 381
SfaNI GCATC 1 cut(s) 267
SinI GGWCC 1 cut(s) 219
SpeI ACTAGT 1 cut(s) 316
Sse9I AATT 5 cut(s) 27, 59, 84, 178, 397
SsiI CCGC 3 cut(s) 113, 246, 329
SspMI CTAG 3 cut(s) 317, 366, 389
SstI GAGCTC 1 cut(s) 291
StyI CCWWGG 1 cut(s) 241
TaiI ACGT 1 cut(s) 374
TaqI TCGA 1 cut(s) 77
TasI AATT 5 cut(s) 27, 59, 84, 178, 397
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 296, 350
Tru9I TTAA 2 cut(s) 296, 350
TscAI CASTG 1 cut(s) 268
TseI GCWGC 1 cut(s) 12
TspRI CASTG 1 cut(s) 268
VneI GTGCAC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 219
XapI RAATTY 2 cut(s) 59, 178
XspI CTAG 3 cut(s) 317, 366, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.