Rh2DG467000

Domain of unknown function (DUF4220)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000618
Physical Location & Seq
Reverse (-)
67649832 .. 67653170
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG467000.1

Sequence Viewer

Length: 360 bp
ATGCTCAACTACTCTAGATGTTCTCAGTACATCAACAATCCTGGATCAGACTGGGTTGCAACACTCTCACTCAGCCTACTTCCCAGCAATTCGATAGACCATGATGCGAATTCAAAAGACCTAGACTACATCATCATAGCATTTTGGGCTCCATTTCTTCTTCTTCACCTCGGTGGGCCAGACACCATTACCGCGTCATCTTTGGAAGACAATGAGTTGTGGTCGAGGCACTTCCTTGTGCTACTAGTCCAGGTTGCAGTCGCTTTCTACATCTACCTTAGAGCCTGGGGTGGTTACGCCAGATACGTTAGGCATTATCAAATTTGGAGAAAGTACTTGGGTTCTGAGGTCTGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4220 DUF594

Protein Analysis

119

Amino Acids

13.72

Weight (kDa)

6.38

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4220 PF13968 16 - 98 4.7e-29 Domain of unknown function (DUF4220)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04580 FvH4_3g37050 FvH4_3g37060 FvH4_4g30270 FvH4_6g34780 FvH4_6g34780
malus_domestica MD11G1092500.v1.1 MD17G1025500.v1.1
prunus_persica Prupe.1G206300_v2.0.a1 Prupe.3G040700_v2.0.a1 Prupe.3G040900_v2.0.a1 Prupe.3G041300_v2.0.a1 Prupe.3G041600_v2.0.a1 Prupe.3G061600_v2.0.a1 Prupe.4G109300_v2.0.a1 Prupe.6G069600_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.8G014800_v2.0.a1 Prupe.8G037600_v2.0.a1
pyrus_communis pycom09g10050 pycom17g16040
rosa_chinensis RchiOBHm_Chr2g0145601 RchiOBHm_Chr5g0066461 RchiOBHm_Chr5g0066471 RchiOBHm_Chr5g0066481
rosa_laevigata RLG00000019691 RLG00000020148 RLG00000020153 RLG00000035869 RLG00000035878 RLG00000035880
rosa_multiflora Rmu_co8287763.1_g000001 Rmu_co8480723.1_g000001 Rmu_co8493537.1_g000001 Rmu_sc0002170.1_g000044 Rmu_sc0002599.1_g000001 Rmu_sc0002718.1_g000013 Rmu_sc0003046.1_g000008 Rmu_sc0007761.1_g000002
rosa_roxburghii Rroxscaffold_152G00434590 Rroxscaffold_1G00014400 Rroxscaffold_1G00014410 Rroxscaffold_1G00014570 Rroxscaffold_2G00100650 Rroxscaffold_2G00106640
rosa_rugosa Rorug02G0392200 Rorug02G0392400 Rorug05G0378500 Rorug05G0378500 Rorug05G0378500
rosa_samantha Rh2AG446400 Rh2AG446500 Rh2BG457100 Rh2BG457200 Rh2BG457300 Rh2BG458200 Rh2CG432200 Rh2CG433100 Rh2CG433200 Rh2DG466800 Rh2DG466900 Rh2DG467000 Rh2DG467800 Rh3DG193900 Rh5AG437600 Rh5AG437700 Rh5AG437800 Rh5BG453700 Rh5DG468800 Rh7AG352500 Rh7CG369800 Rh7DG349000
rosa_wichuraiana Rw2G036410 Rw2G036460 Rw3G014910 Rw5G040940 Rw7G029760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 2 cut(s) 109, 321
AfaI GTAC 2 cut(s) 29, 335
AgsI TTSAA 1 cut(s) 114
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 3 cut(s) 40, 249, 284
AleI CACNNNNGTG 1 cut(s) 171
AlwI GGATC 1 cut(s) 52
AoxI GGCC 1 cut(s) 176
ApoI RAATTY 2 cut(s) 109, 321
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 158
BanII GRGCYC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 213
BciT130I CCWGG 3 cut(s) 42, 251, 286
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 3 cut(s) 15, 122, 245
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 3 cut(s) 42, 251, 286
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 3 cut(s) 42, 251, 286
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 169, 285
Bse1I ACTGG 1 cut(s) 56
BseBI CCWGG 3 cut(s) 42, 251, 286
BseDI CCNNGG 2 cut(s) 169, 285
BseMII CTCAG 3 cut(s) 38, 85, 336
BseNI ACTGG 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 178
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 3 cut(s) 37, 84, 337
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 169, 285
BssMI GATC 1 cut(s) 44
Bst2UI CCWGG 3 cut(s) 42, 251, 286
BstDEI CTNAG 4 cut(s) 24, 71, 278, 345
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 3 cut(s) 42, 251, 286
BstSCI CCNGG 3 cut(s) 40, 249, 284
BstUI CGCG 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 183
Csp6I GTAC 2 cut(s) 28, 334
CviAII CATG 1 cut(s) 101
CviJI RGCY 4 cut(s) 75, 149, 178, 284
CviKI_1 RGCY 4 cut(s) 75, 149, 178, 284
CviQI GTAC 2 cut(s) 28, 334
DdeI CTNAG 4 cut(s) 24, 71, 278, 345
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 40, 249, 284
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 1 cut(s) 104
FaiI YATR 2 cut(s) 102, 137
FatI CATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 151
FspBI CTAG 3 cut(s) 15, 122, 245
GsaI CCCAGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 178
HgaI GACGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 104
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 49, 346
Hpy188III TCNNGA 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 59, 257, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 4 cut(s) 24, 71, 278, 345
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 154
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 15, 122, 245
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 4 cut(s) 149, 152, 155, 218
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 88, 109, 321
MnlI CCTC 3 cut(s) 179, 219, 340
MslI CAYNNNNRTG 1 cut(s) 171
MspR9I CCNGG 3 cut(s) 42, 251, 286
MvaI CCWGG 3 cut(s) 42, 251, 286
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 1 cut(s) 44
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 150
OliI CACNNNNGTG 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PfoI TCCNGGA 1 cut(s) 40
Psp6I CCWGG 3 cut(s) 40, 249, 284
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 3 cut(s) 40, 249, 284
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 176
RsaI GTAC 2 cut(s) 29, 335
RsaNI GTAC 2 cut(s) 28, 334
RseI CAYNNNNRTG 1 cut(s) 171
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 335
ScrFI CCNGG 3 cut(s) 42, 251, 286
SduI GDGCHC 1 cut(s) 151
SetI ASST 6 cut(s) 123, 171, 255, 279, 309, 351
SfaNI GCATC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 171
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 3 cut(s) 88, 109, 321
SsiI CCGC 1 cut(s) 192
SspMI CTAG 3 cut(s) 15, 122, 245
StyD4I CCNGG 3 cut(s) 40, 249, 284
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 92, 224
TasI AATT 3 cut(s) 88, 109, 321
TatI WGTACW 2 cut(s) 27, 333
XapI RAATTY 2 cut(s) 109, 321
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 3 cut(s) 15, 122, 245
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.