Rh2DG466900

Domain of unknown function (DUF4220)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
67643891 .. 67649808
5918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG466900.1

Sequence Viewer

Length: 327 bp
ATGCTCCCTCCTCCTGATCCAGGCCCCAACTACGCCAGATACATGAATGAGTTCCGCTCTAAGGAATCTGAAGGCTTCAAGGTTGAGTTAGGGAGAGTGATTGAAACTCCTAAAAAGGTCCAGATATACAAGAAACTGAAGATATATAGGAACTTGAAAAAGCACCTTTACATCGATTCAAAGGATGTTTATCAGGAGTTGAAAGAATTGATATTTGATCAGCTTCTAAAGAAATCAAGGACTGCCCCAGAACTCGAGGATTGCAAGAAATTATGTACTCATAGGGGTGTCTGGATTCTTGATAGTGAGAAATGCCATGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.87

Weight (kDa)

9.2

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000618)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04580 FvH4_3g37050 FvH4_3g37060 FvH4_4g30270 FvH4_6g34780 FvH4_6g34780
malus_domestica MD11G1092500.v1.1 MD17G1025500.v1.1
prunus_persica Prupe.1G206300_v2.0.a1 Prupe.3G040700_v2.0.a1 Prupe.3G040900_v2.0.a1 Prupe.3G041300_v2.0.a1 Prupe.3G041600_v2.0.a1 Prupe.3G061600_v2.0.a1 Prupe.4G109300_v2.0.a1 Prupe.6G069600_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.6G069800_v2.0.a1 Prupe.8G014800_v2.0.a1 Prupe.8G037600_v2.0.a1
pyrus_communis pycom09g10050 pycom17g16040
rosa_chinensis RchiOBHm_Chr2g0145601 RchiOBHm_Chr5g0066461 RchiOBHm_Chr5g0066471 RchiOBHm_Chr5g0066481
rosa_laevigata RLG00000019691 RLG00000020148 RLG00000020153 RLG00000035869 RLG00000035878 RLG00000035880
rosa_multiflora Rmu_co8287763.1_g000001 Rmu_co8480723.1_g000001 Rmu_co8493537.1_g000001 Rmu_sc0002170.1_g000044 Rmu_sc0002599.1_g000001 Rmu_sc0002718.1_g000013 Rmu_sc0003046.1_g000008 Rmu_sc0007761.1_g000002
rosa_roxburghii Rroxscaffold_152G00434590 Rroxscaffold_1G00014400 Rroxscaffold_1G00014410 Rroxscaffold_1G00014570 Rroxscaffold_2G00100650 Rroxscaffold_2G00106640
rosa_rugosa Rorug02G0392200 Rorug02G0392400 Rorug05G0378500 Rorug05G0378500 Rorug05G0378500
rosa_samantha Rh2AG446400 Rh2AG446500 Rh2BG457100 Rh2BG457200 Rh2BG457300 Rh2BG458200 Rh2CG432200 Rh2CG433100 Rh2CG433200 Rh2DG466800 Rh2DG466900 Rh2DG467000 Rh2DG467800 Rh3DG193900 Rh5AG437600 Rh5AG437700 Rh5AG437800 Rh5BG453700 Rh5DG468800 Rh7AG352500 Rh7CG369800 Rh7DG349000
rosa_wichuraiana Rw2G036410 Rw2G036460 Rw3G014910 Rw5G040940 Rw7G029760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 57
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 11
AcuI CTGAAG 2 cut(s) 90, 158
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 20, 61
AgsI TTSAA 5 cut(s) 79, 104, 157, 180, 202
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
AlwI GGATC 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 23, 118
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 23, 118
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bsa29I ATCGAT 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 61
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 174
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 20, 61
BshFI GGCC 1 cut(s) 24
BshVI ATCGAT 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 20, 61
BsnI GGCC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 254
Bsp143I GATC 2 cut(s) 16, 217
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 24
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 57
BssMI GATC 2 cut(s) 16, 217
Bst2UI CCWGG 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 2 cut(s) 19, 220
BstMBI GATC 2 cut(s) 16, 217
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 1 cut(s) 24
BsuTUI ATCGAT 1 cut(s) 174
BtsCI GGATG 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 23, 118
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 43, 317
CviJI RGCY 3 cut(s) 24, 75, 223
CviKI_1 RGCY 3 cut(s) 24, 75, 223
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 18, 219
DpnII GATC 2 cut(s) 16, 217
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 90, 158
Eco88I CYCGRG 1 cut(s) 254
EcoNI CCTNNNNNAGG 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 19
FaeI CATG 2 cut(s) 46, 320
FaiI YATR 7 cut(s) 44, 127, 145, 147, 274, 282, 318
FatI CATG 2 cut(s) 42, 316
FbaI TGATCA 1 cut(s) 217
FokI GGATG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 24
Hin1II CATG 2 cut(s) 46, 320
HinfI GANTC 3 cut(s) 65, 176, 295
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 5 cut(s) 14, 121, 194, 292, 299
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 264
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 46, 320
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 16, 217
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 8 cut(s) 6, 27, 33, 49, 134, 179, 261, 277
MalI GATC 2 cut(s) 18, 219
MbiI CCGCTC 1 cut(s) 57
MboI GATC 2 cut(s) 16, 217
MboII GAAGA 1 cut(s) 151
MluCI AATT 2 cut(s) 206, 269
MnlI CCTC 3 cut(s) 18, 21, 250
MroXI GAANNNNTTC 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
NdeII GATC 2 cut(s) 16, 217
NlaIII CATG 2 cut(s) 46, 320
NlaIV GGNNCC 1 cut(s) 25
PaeR7I CTCGAG 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 3 cut(s) 65, 176, 295
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 23, 118
PspXI VCTCGAGB 1 cut(s) 254
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 285
Sau3AI GATC 2 cut(s) 16, 217
Sau96I GGNCC 2 cut(s) 23, 118
ScrFI CCNGG 1 cut(s) 21
SetI ASST 4 cut(s) 84, 120, 168, 225
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 118
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 206, 269
SsiI CCGC 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 19
TaqI TCGA 2 cut(s) 174, 255
TasI AATT 2 cut(s) 206, 269
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 3 cut(s) 65, 176, 295
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 118
XagI CCTNNNNNAGG 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.