Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006435

Physical Location & Seq

Genomic Coordinates Reverse (-)

8282858 .. 8285504

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTTGCAAAATGTAGAGTGGAACAGCTTTGCCCCTTCCCCTATGACCTCATCCAGCAAGAGCTGTAGCGATATCCTAGTGTGGGATGCAACTGCAGCTGATCCTAAATTGCTGGTCTTTTTGAAATCGTACAGGAATTTCTTACACACTGAATCTGGTACCAATGGTAAACATGGTATCGAGAAACAACCGTTTCAGCTTCCTGATTTCATTGCTGCAACTGGTAGTGAGAAAATTAGACAGAGACGTTCCTCAATAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

87

Amino Acids

9.67

Weight (kDa)

8.93

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	27 - 82	5.8e-10	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006435)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0042000 Rorug01G0050800 Rorug01G0191900 Rorug02G0235300 Rorug02G0256700 Rorug02G0257600 Rorug02G0263400.1 Rorug02G0313300 Rorug02G0339400 Rorug02G0392400 Rorug03G0198300 Rorug03G0229600 Rorug04G0177800 Rorug04G0263800 Rorug05G0190400.1 Rorug05G0221200 Rorug05G0252900 Rorug05G0259700 Rorug05G0294100 Rorug05G0518500 Rorug05G0551300 Rorug05G0559800 Rorug06G0053400 Rorug06G0090000 Rorug07G0015700 Rorug07G0196700 Rorug07G0203000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	136
AfaI	GTAC	2 cut(s)	131, 160
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	4 cut(s)	27, 63, 98, 199
AluI	AGCT	4 cut(s)	27, 63, 98, 199
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	95, 215
ApoI	RAATTY	1 cut(s)	136
Asp718I	GGTACC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	107, 202
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	2 cut(s)	64, 93
BisI	GCNGC	2 cut(s)	96, 216
BlsI	GCNGC	2 cut(s)	97, 217
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	50, 91
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	107, 202
BshNI	GGYRCC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	50, 91
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSFI	CTRYAG	2 cut(s)	64, 93
BstV1I	GCAGC	2 cut(s)	107, 202
BtsCI	GGATG	2 cut(s)	50, 91
BtsIMutI	CAGTG	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	130, 159
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	4 cut(s)	27, 63, 98, 199
CviKI_1	RGCY	4 cut(s)	27, 63, 98, 199
CviQI	GTAC	2 cut(s)	130, 159
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	1 cut(s)	176
FaiI	YATR	2 cut(s)	44, 174
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	96, 216
FokI	GGATG	2 cut(s)	37, 98
Fsp4HI	GCNGC	2 cut(s)	96, 216
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	2 cut(s)	96, 216
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	181, 203
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	4 cut(s)	7, 89, 95, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	176
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	6 cut(s)	67, 98, 118, 141, 207, 216
Lsp1109I	GCAGC	2 cut(s)	107, 202
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	247
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MluCI	AATT	3 cut(s)	107, 136, 234
MnlI	CCTC	2 cut(s)	58, 262
MspA1I	CMGCKG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	97, 217
PspN4I	GGNNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	131, 160
RsaNI	GTAC	2 cut(s)	130, 159
SatI	GCNGC	2 cut(s)	96, 216
Sau3AI	GATC	1 cut(s)	100
SetI	ASST	6 cut(s)	29, 50, 65, 100, 201, 250
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	2 cut(s)	64, 93
Sse9I	AATT	3 cut(s)	107, 136, 234
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	107, 136, 234
TfiI	GAWTC	1 cut(s)	152
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	2 cut(s)	95, 215
TspDTI	ATGAA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	154
XapI	RAATTY	1 cut(s)	136
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.