Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002819

Physical Location & Seq

Genomic Coordinates Forward (+)

45042730 .. 45044128

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0331900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCAGCAGATGAAGCATGTCCAATGAAAGGTGGAGATGGCCCCAACAGTTATGCCAAGAACTCCATATACCAGAAAGGAGCGGTGGATGCTGCAAAAGAACTTTTGAGCAAGGCAATTGCAGAAAAGCTTGACCTAGAAATCCTGTTAGCCTCCAACAGTACTTTTCAGATTGCGGATTTGGGTTGCTCTATTGGACCAAATACATTTTGGGCAATTGAAAACATTCTTGAAGCCGTGGAATTGAAGTATCAAATTCAAGGGATGAAAAAGTCTCCTATAACCCTTGAATTTCAAGTTTTCTTTAATGATCATACCCCAAATGACTTCAACATGCTCTTCAAATCACTCCCTCTGAACAGGCAATATTATGCTGCGGGTGTGCCAGGTTCGTTCTATGGTCGCCTATTTCCTAAAGCTTCACTTCACTTTGTTCACTCTTCTACTGCCATTCATTGGCTTTCTAGAGTGCCAAAAGATCTAGCGGACAGAAACTCTCGTTCTTGGAATAAAGGAAAAATCCAATTCTCTCATTCCTCGGATGAAGTAATAAGGGCTTTTGAAGCTCAGTTTTCTGAGGACATGGAGTGCTTCCTGAATGCCAGGGCACAAGAAATTGTGTATGGAGGACTCGTGGCACTTATTGTTTCAGGCCGGCCCGATGGTACCCCTCATTCAGATTCTTCACTGAATGTGATCTATCACCTTTTAGGATCTTGCCTCATGGAAATGGCAAGGAAGGGAGTAGTTAGTGAAGAGAAAGTGGATGCATTTAACATAACTATGTTTTACATGTCTCCTCAAGAACTGAAAGCTGCTGTAGAACTAAATGGACGTTTTACCATAGAGTGTATGGAAAACTTACCTCGTCTCTCCACAATTGACAATGTCACTGAAAGTCCCCAACTGATTGCATCTCACGTTAGAGCTGTCACAGAGGTTCTCTTCCAGCAGCAATTCGGAGATGAAATCTTAGATGAGCTCTTTGATTTGTACCGTACAAAACTTGAAGAGAAGCCTTCTATCTTTGACCCAACAAAGGCGATTAACTTTCTCGTTGTGCTTAAACGCCAAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0034605 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043335 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

360

Amino Acids

40.3

Weight (kDa)

5.38

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	51 - 357	2e-102	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74310 AT1G74310 AT4G14670
fragaria_vesca	FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_7g22310 FvH4_7g22310 FvH4_7g22310
malus_domestica	MD06G1201600.v1.1 MD14G1210600.v1.1 MD14G1211000.v1.1
prunus_persica	Prupe.5G203700_v2.0.a1
pyrus_communis	pycom06g17750 pycom14g17400
rosa_chinensis	RchiOBHm_Chr1g0366791 RchiOBHm_Chr7g0182871 RchiOBHm_Chr7g0182901
rosa_laevigata	RLG00000005096 RLG00000005098 RLG00000027319
rosa_multiflora	Rmu_sc0000014.1_g000026 Rmu_sc0000318.1_g000026
rosa_roxburghii	Rroxscaffold_3G00230950 Rroxscaffold_3G00270960
rosa_rugosa	Rorug01G0331900 Rorug01G0333200 Rorug06G0451000
rosa_samantha	Rh1AG340000 Rh7AG054200 Rh7AG403300 Rh7BG053700 Rh7CG055300 Rh7DG053500 Rh7DG053600
rosa_wichuraiana	Rw0G008600 Rw1G030200 Rw7G004420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	665
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccBSI	CCGCTC	1 cut(s)	83
AciI	CCGC	4 cut(s)	83, 176, 377, 485
AclWI	GGATC	1 cut(s)	721
AcsI	RAATTY	2 cut(s)	255, 290
AfaI	GTAC	4 cut(s)	163, 667, 995, 1000
AfiI	CCNNNNNNNGG	3 cut(s)	29, 456, 1039
AflIII	ACRYGT	1 cut(s)	792
AjnI	CCWGG	2 cut(s)	385, 602
AluBI	AGCT	6 cut(s)	130, 419, 566, 815, 929, 982
AluI	AGCT	6 cut(s)	130, 419, 566, 815, 929, 982
Alw21I	GWGCWC	1 cut(s)	984
Alw26I	GTCTC	3 cut(s)	279, 801, 875
AlwI	GGATC	1 cut(s)	721
AoxI	GGCC	3 cut(s)	40, 652, 656
ApeKI	GCWGC	5 cut(s)	5, 92, 374, 815, 952
ApoI	RAATTY	2 cut(s)	255, 290
Asp700I	GAANNNNTTC	1 cut(s)	225
Asp718I	GGTACC	1 cut(s)	665
AspS9I	GGNCC	3 cut(s)	41, 197, 657
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	984
BauI	CACGAG	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	984
BbvI	GCAGC	5 cut(s)	17, 79, 361, 802, 964
BccI	CCATC	2 cut(s)	32, 656
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	2 cut(s)	387, 604
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	279, 801, 875
BfaI	CTAG	3 cut(s)	137, 465, 482
BfmI	CTRYAG	1 cut(s)	819
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	5 cut(s)	6, 93, 375, 816, 953
BlsI	GCNGC	5 cut(s)	7, 94, 376, 817, 954
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	387, 604
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	3 cut(s)	41, 197, 657
BmiI	GGNNCC	2 cut(s)	43, 667
BmrFI	CCNGG	2 cut(s)	387, 604
BmsI	GCATC	3 cut(s)	79, 757, 923
BpuEI	CTTGAG	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	237, 537, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 456, 1039
Bse118I	RCCGGY	1 cut(s)	654
BseBI	CCWGG	2 cut(s)	387, 604
BseDI	CCNNGG	3 cut(s)	237, 537, 603
BseGI	GGATG	4 cut(s)	94, 270, 547, 772
BseLI	CCNNNNNNNGG	3 cut(s)	29, 456, 1039
BseMII	CTCAG	2 cut(s)	567, 581
BseRI	GAGGAG	1 cut(s)	789
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	5 cut(s)	17, 79, 361, 802, 964
BshFI	GGCC	3 cut(s)	42, 654, 658
BshNI	GGYRCC	1 cut(s)	665
BsiHKAI	GWGCWC	1 cut(s)	984
BsiSI	CCGG	1 cut(s)	655
BslFI	GGGAC	1 cut(s)	885
BslI	CCNNNNNNNGG	3 cut(s)	29, 456, 1039
BsmAI	GTCTC	3 cut(s)	279, 801, 875
BsmBI	CGTCTC	1 cut(s)	875
BsmFI	GGGAC	1 cut(s)	885
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	3 cut(s)	42, 654, 658
Bsp1286I	GDGCHC	2 cut(s)	610, 984
Bsp143I	GATC	4 cut(s)	310, 478, 696, 713
BspACI	CCGC	4 cut(s)	83, 176, 377, 485
BspANI	GGCC	3 cut(s)	42, 654, 658
BspCNI	CTCAG	2 cut(s)	568, 580
BspLI	GGNNCC	2 cut(s)	43, 667
BspPI	GGATC	1 cut(s)	721
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	665
BsrBI	CCGCTC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	654
BssAI	RCCGGY	1 cut(s)	654
BssECI	CCNNGG	3 cut(s)	237, 537, 603
BssMI	GATC	4 cut(s)	310, 478, 696, 713
BssSI	CACGAG	1 cut(s)	632
Bst2BI	CACGAG	1 cut(s)	632
Bst2UI	CCWGG	2 cut(s)	387, 604
Bst4CI	ACNGT	3 cut(s)	50, 161, 998
Bst6I	CTCTTC	5 cut(s)	344, 445, 750, 950, 1005
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	567, 576, 973
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	4 cut(s)	94, 270, 547, 772
BstKTI	GATC	4 cut(s)	313, 481, 699, 716
BstMAI	GTCTC	3 cut(s)	279, 801, 875
BstMBI	GATC	4 cut(s)	310, 478, 696, 713
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 89, 563
BstNI	CCWGG	2 cut(s)	387, 604
BstNSI	RCATGY	3 cut(s)	21, 337, 796
BstSCI	CCNGG	2 cut(s)	385, 602
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	5 cut(s)	17, 79, 361, 802, 964
BstX2I	RGATCY	2 cut(s)	478, 713
BstYI	RGATCY	2 cut(s)	478, 713
BsuRI	GGCC	3 cut(s)	42, 654, 658
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	94, 270, 547, 772
BtsIMutI	CAGTG	2 cut(s)	686, 891
Cac8I	GCNNGC	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	654
Cfr13I	GGNCC	3 cut(s)	41, 197, 657
Csp6I	GTAC	4 cut(s)	162, 666, 994, 999
CviAII	CATG	5 cut(s)	18, 334, 583, 724, 793
CviQI	GTAC	4 cut(s)	162, 666, 994, 999
DdeI	CTNAG	3 cut(s)	567, 576, 973
DpnI	GATC	4 cut(s)	312, 480, 698, 715
DpnII	GATC	4 cut(s)	310, 478, 696, 713
Eam1104I	CTCTTC	5 cut(s)	344, 445, 750, 950, 1005
EarI	CTCTTC	5 cut(s)	344, 445, 750, 950, 1005
Ecl136II	GAGCTC	1 cut(s)	982
Eco24I	GRGCYC	1 cut(s)	984
Eco47I	GGWCC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	982
EcoICRI	GAGCTC	1 cut(s)	982
EcoRII	CCWGG	2 cut(s)	385, 602
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	984
Esp3I	CGTCTC	1 cut(s)	875
FaeI	CATG	5 cut(s)	21, 337, 586, 727, 796
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	885
FatI	CATG	5 cut(s)	17, 333, 582, 723, 792
FauI	CCCGC	1 cut(s)	370
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	6, 93, 375, 816, 953
FokI	GGATG	4 cut(s)	101, 277, 554, 779
FriOI	GRGCYC	1 cut(s)	984
FseI	GGCCGGCC	1 cut(s)	658
Fsp4HI	GCNGC	5 cut(s)	6, 93, 375, 816, 953
FspBI	CTAG	3 cut(s)	137, 465, 482
GluI	GCNGC	5 cut(s)	6, 93, 375, 816, 953
HaeIII	GGCC	3 cut(s)	42, 654, 658
HapII	CCGG	1 cut(s)	655
Hin1II	CATG	5 cut(s)	21, 337, 586, 727, 796
HindIII	AAGCTT	2 cut(s)	128, 417
HinfI	GANTC	2 cut(s)	630, 680
HpaII	CCGG	1 cut(s)	655
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	6 cut(s)	171, 357, 541, 577, 679, 962
Hpy188III	TCNNGA	4 cut(s)	230, 465, 595, 803
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	2 cut(s)	733, 1029
HpyCH4III	ACNGT	3 cut(s)	50, 161, 998
HpyCH4IV	ACGT	2 cut(s)	835, 921
HpyCH4V	TGCA	4 cut(s)	95, 122, 770, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 89, 563
HpyF3I	CTNAG	3 cut(s)	567, 576, 973
HpySE526I	ACGT	2 cut(s)	835, 921
Hsp92II	CATG	5 cut(s)	21, 337, 586, 727, 796
KpnI	GGTACC	1 cut(s)	669
KroI	GCCGGC	1 cut(s)	654
KroNI	GCCGGC	1 cut(s)	656
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	310, 478, 696, 713
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	5 cut(s)	17, 79, 361, 802, 964
LweI	GCATC	3 cut(s)	79, 757, 923
MaeI	CTAG	3 cut(s)	137, 465, 482
MaeII	ACGT	2 cut(s)	835, 921
MaeIII	GTNAC	2 cut(s)	889, 931
MalI	GATC	4 cut(s)	312, 480, 698, 715
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	4 cut(s)	310, 478, 696, 713
MboII	GAAGA	6 cut(s)	331, 432, 675, 767, 937, 1022
MfeI	CAATTG	3 cut(s)	117, 216, 879
MflI	RGATCY	2 cut(s)	478, 713
MhlI	GDGCHC	2 cut(s)	610, 984
MlyI	GAGTC	1 cut(s)	624
MmeI	TCCRAC	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	772
MroNI	GCCGGC	1 cut(s)	654
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	4 cut(s)	306, 774, 1047, 1065
MslI	CAYNNNNRTG	2 cut(s)	728, 782
MspI	CCGG	1 cut(s)	655
MspR9I	CCNGG	2 cut(s)	387, 604
MunI	CAATTG	3 cut(s)	117, 216, 879
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	2 cut(s)	387, 604
MwoI	GCNNNNNNNGC	3 cut(s)	14, 89, 563
NaeI	GCCGGC	1 cut(s)	656
NdeII	GATC	4 cut(s)	310, 478, 696, 713
NgoMIV	GCCGGC	1 cut(s)	654
NlaIII	CATG	5 cut(s)	21, 337, 586, 727, 796
NlaIV	GGNNCC	2 cut(s)	43, 667
NmuCI	GTSAC	2 cut(s)	889, 931
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	3 cut(s)	21, 337, 796
PciI	ACATGT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	344
PctI	GAATGC	1 cut(s)	604
PdiI	GCCGGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	680
PflFI	GACNNNGTC	1 cut(s)	887
PflMI	CCANNNNNTGG	1 cut(s)	456
PkrI	GCNGC	5 cut(s)	7, 94, 376, 817, 954
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
PscI	ACATGT	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	984
Psp6I	CCWGG	2 cut(s)	385, 602
PspGI	CCWGG	2 cut(s)	385, 602
PspN4I	GGNNCC	2 cut(s)	43, 667
PspPI	GGNCC	3 cut(s)	41, 197, 657
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PsuI	RGATCY	2 cut(s)	478, 713
PsyI	GACNNNGTC	1 cut(s)	887
RigI	GGCCGGCC	1 cut(s)	658
RsaI	GTAC	4 cut(s)	163, 667, 995, 1000
RsaNI	GTAC	4 cut(s)	162, 666, 994, 999
RseI	CAYNNNNRTG	2 cut(s)	728, 782
SacI	GAGCTC	1 cut(s)	984
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	4 cut(s)	306, 774, 1047, 1065
SatI	GCNGC	5 cut(s)	6, 93, 375, 816, 953
Sau3AI	GATC	4 cut(s)	310, 478, 696, 713
Sau96I	GGNCC	3 cut(s)	41, 197, 657
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	624
ScrFI	CCNGG	2 cut(s)	387, 604
SduI	GDGCHC	2 cut(s)	610, 984
SfaNI	GCATC	3 cut(s)	79, 757, 923
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	728, 782
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
SsiI	CCGC	4 cut(s)	83, 176, 377, 485
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	3 cut(s)	137, 465, 482
SstI	GAGCTC	1 cut(s)	984
StyD4I	CCNGG	2 cut(s)	385, 602
TaaI	ACNGT	3 cut(s)	50, 161, 998
TaiI	ACGT	2 cut(s)	838, 924
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	4 cut(s)	306, 774, 1047, 1065
Tru9I	TTAA	4 cut(s)	306, 774, 1047, 1065
TscAI	CASTG	2 cut(s)	693, 898
TseFI	GTSAC	2 cut(s)	889, 931
TseI	GCWGC	5 cut(s)	5, 92, 374, 815, 952
Tsp45I	GTSAC	2 cut(s)	889, 931
TspDTI	ATGAA	6 cut(s)	27, 41, 281, 443, 558, 981
TspRI	CASTG	2 cut(s)	693, 898
Tth111I	GACNNNGTC	1 cut(s)	887
Van91I	CCANNNNNTGG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	255, 290
XbaI	TCTAGA	1 cut(s)	464
XceI	RCATGY	3 cut(s)	21, 337, 796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	207, 850
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	3 cut(s)	137, 465, 482
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.