Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002819

Physical Location & Seq

Genomic Coordinates Reverse (-)

58024577 .. 58025077

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0451000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAGCAACAGCACCACCATGGATTCAAAGAAGTCTAACAAGATCAGGGAGATTGTGAGGCTTCAACAGATTCTCAAAAAGTGGAGAAAGATCGCTAACTCGCCAAAAGCGAGCTCCAATACCATCAGCAGCAGCAACAAGAGCATCAAGTTTCTGAAAAGAACACTTTCTCTATCAGATAAAACAGGCAGTACCTGTGAAGCTTCTAACAATGCTCATGTCCCCAAAGGCTACCTTGCTGTTTGTGTTGGAGAAGAGCTCAAGAGATTCGTCATTCCAACAGATTATCTTGGCCGTCCTGCTTTTCAGTTTCTGCTGAGAGAAGCTGAGGAGGAGTTTGGGTTTCAACAGACCGGCGTTCTGAGGATTCCATGTGAGGTTTCTGTGTTCGAAGAGCTTCTGAAGATGGTGGAGGAAGATAGGGATACATTCTTCATGCAAGGATGCTATTCAGAAAGCCAGCTCAACTTTTACCACCCAGAAAGCCCAATGTGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0034605 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043335 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

166

Amino Acids

18.98

Weight (kDa)

8.8

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	20 - 137	9.3e-29	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74310 AT1G74310 AT4G14670
fragaria_vesca	FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_7g22310 FvH4_7g22310 FvH4_7g22310
malus_domestica	MD06G1201600.v1.1 MD14G1210600.v1.1 MD14G1211000.v1.1
prunus_persica	Prupe.5G203700_v2.0.a1
pyrus_communis	pycom06g17750 pycom14g17400
rosa_chinensis	RchiOBHm_Chr1g0366791 RchiOBHm_Chr7g0182871 RchiOBHm_Chr7g0182901
rosa_laevigata	RLG00000005096 RLG00000005098 RLG00000027319
rosa_multiflora	Rmu_sc0000014.1_g000026 Rmu_sc0000318.1_g000026
rosa_roxburghii	Rroxscaffold_3G00230950 Rroxscaffold_3G00270960
rosa_rugosa	Rorug01G0331900 Rorug01G0333200 Rorug06G0451000
rosa_samantha	Rh1AG340000 Rh7AG054200 Rh7AG403300 Rh7BG053700 Rh7CG055300 Rh7DG053500 Rh7DG053600
rosa_wichuraiana	Rw0G008600 Rw1G030200 Rw7G004420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	27, 65, 347
AluBI	AGCT	6 cut(s)	114, 203, 259, 326, 397, 463
AluI	AGCT	6 cut(s)	114, 203, 259, 326, 397, 463
Alw21I	GWGCWC	2 cut(s)	116, 261
AlwNI	CAGNNNCTG	2 cut(s)	195, 313
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	129, 132
Asp700I	GAANNNNTTC	2 cut(s)	166, 396
AsuII	TTCGAA	1 cut(s)	390
BanII	GRGCYC	2 cut(s)	116, 261
Bbv12I	GWGCWC	2 cut(s)	116, 261
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	141, 144
BccI	CCATC	2 cut(s)	131, 400
BceAI	ACGGC	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	2 cut(s)	130, 133
BlsI	GCNGC	2 cut(s)	131, 134
BmsI	GCATC	2 cut(s)	153, 434
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bse118I	RCCGGY	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	449
BseMII	CTCAG	3 cut(s)	308, 318, 353
BseRI	GAGGAG	2 cut(s)	344, 347
BseXI	GCAGC	2 cut(s)	141, 144
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	116, 261
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	116, 261
Bsp143I	GATC	2 cut(s)	42, 90
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	3 cut(s)	309, 319, 354
BspQI	GCTCTTC	2 cut(s)	249, 387
BspT104I	TTCGAA	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	42, 90
BssT1I	CCWWGG	1 cut(s)	18
Bst6I	CTCTTC	2 cut(s)	249, 387
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	112, 461
BstDEI	CTNAG	3 cut(s)	317, 327, 362
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	449
BstKTI	GATC	2 cut(s)	45, 93
BstMBI	GATC	2 cut(s)	42, 90
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 492
BstV1I	GCAGC	2 cut(s)	141, 144
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	112, 461
CaiI	CAGNNNCTG	2 cut(s)	195, 313
Cfr10I	RCCGGY	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	4 cut(s)	19, 218, 372, 436
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	3 cut(s)	317, 327, 362
DpnI	GATC	2 cut(s)	44, 92
DpnII	GATC	2 cut(s)	42, 90
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	249, 387
EarI	CTCTTC	2 cut(s)	249, 387
Ecl136II	GAGCTC	2 cut(s)	114, 259
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	116, 261
Eco53kI	GAGCTC	2 cut(s)	114, 259
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	2 cut(s)	114, 259
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	116, 261
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	4 cut(s)	22, 221, 375, 439
FaiI	YATR	4 cut(s)	20, 219, 373, 437
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	4 cut(s)	18, 217, 371, 435
Fnu4HI	GCNGC	2 cut(s)	130, 133
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	2 cut(s)	116, 261
Fsp4HI	GCNGC	2 cut(s)	130, 133
GluI	GCNGC	2 cut(s)	130, 133
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	4 cut(s)	22, 221, 375, 439
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	4 cut(s)	23, 70, 267, 367
HpaII	CCGG	1 cut(s)	354
Hpy188I	TCNGA	5 cut(s)	156, 178, 363, 402, 454
Hpy188III	TCNNGA	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	439, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 492
HpyF3I	CTNAG	3 cut(s)	317, 327, 362
Hsp92II	CATG	4 cut(s)	22, 221, 375, 439
Kzo9I	GATC	2 cut(s)	42, 90
LguI	GCTCTTC	2 cut(s)	249, 387
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	31, 171, 208, 312, 367, 473, 492
Lsp1109I	GCAGC	2 cut(s)	141, 144
LweI	GCATC	2 cut(s)	153, 434
MalI	GATC	2 cut(s)	44, 92
MboI	GATC	2 cut(s)	42, 90
MboII	GAAGA	5 cut(s)	266, 404, 415, 424, 428
MhlI	GDGCHC	2 cut(s)	116, 261
MmeI	TCCRAC	2 cut(s)	229, 302
MnlI	CCTC	6 cut(s)	51, 322, 325, 357, 370, 406
MroXI	GAANNNNTTC	2 cut(s)	166, 396
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	141, 492
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	42, 90
NlaIII	CATG	4 cut(s)	22, 221, 375, 439
NspV	TTCGAA	1 cut(s)	390
PciSI	GCTCTTC	2 cut(s)	249, 387
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PdmI	GAANNNNTTC	2 cut(s)	166, 396
PfeI	GAWTC	4 cut(s)	23, 70, 267, 367
PkrI	GCNGC	2 cut(s)	131, 134
Psp124BI	GAGCTC	2 cut(s)	116, 261
PstNI	CAGNNNCTG	2 cut(s)	195, 313
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	2 cut(s)	116, 261
SapI	GCTCTTC	2 cut(s)	249, 387
SatI	GCNGC	2 cut(s)	130, 133
Sau3AI	GATC	2 cut(s)	42, 90
SduI	GDGCHC	2 cut(s)	116, 261
SetI	ASST	9 cut(s)	116, 197, 205, 237, 261, 328, 381, 399, 465
SfaNI	GCATC	2 cut(s)	153, 434
SfuI	TTCGAA	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SstI	GAGCTC	2 cut(s)	116, 261
StyI	CCWWGG	1 cut(s)	18
TaqI	TCGA	1 cut(s)	390
TfiI	GAWTC	4 cut(s)	23, 70, 267, 367
TseI	GCWGC	2 cut(s)	129, 132
TspDTI	ATGAA	1 cut(s)	424
XmnI	GAANNNNTTC	2 cut(s)	166, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.