Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002819

Physical Location & Seq

Genomic Coordinates Forward (+)

53286872 .. 53288624

Gene Structure 1753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG403300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTGGGCGAGAGCACAGAAGCTGTTCGTGTTGGAGTTGGACAGGGAACCAGTGGCTACAAGATGCCAATTCTAGAGGAGTATGGAACCAACTTGACTAAGCTAGCAGAGGAGGGAAAGCTGGATCCTGTTGTTGGAAGACAACCACAAATTGAACTTGTTGTCAAAATTTTGTGCTTGCGGAAGAAGAATAATCCCTGCCTTATTGGGGAACCTGGTGTTGGGAAGACTGCAATTGTAGAAGGTCTTGCCCAACGAATTGCAAGCGGTGATGTGCCTGAAACAATAGAGGGAAAGAAGGTTATCACTCTGGATATGGGTCTTCTGGTTGCTGGTACAAAATACCGTGGAGAGTTCGAGGAAAGATTGAAGAAACTAATTGAGGAAATCAAACAAAGTGATGAGATAATTTTGTTTATTGATGAGGTGCACACTTTAATTGGAGCAGGAGCAGCAGAAGGGGCAATAGATGCTGCAAATATATTAAAACCAGCCCTTGCAAGGGGTGAACTGAAGTGTATTGGAGCCACCACTCTAGACGAATACAGAAAGCACATTGAGAGAGACCCAGCATTGGAAAGACGTTTTCAACAAGTTAAAGTTCCTGAACCATCTGTGGACGATACAATACAGATTTTTGATCGCTTTCTACCTGATAAAGCAATTGACTTGATTGATCGAGCTGGTTCTGAAGTTCGCTTTTGTCATGCACAGCTACCTGAAGAAGCTAGAGATCTTGACAAAGAACTGAGACAGATTACCAAGGAGAAGAATGAAGCTGTTCGAAGCCAAGACTTTGAAAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

269

Amino Acids

29.75

Weight (kDa)

5.15

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NBD_SMAX1	PF23569	50 - 140	2e-07	SMAX1 nucleotide binding domain
AAA	PF00004	67 - 196	6e-15	ATPase family associated with various cellular activities (AAA)
AAA_lid_9	PF17871	212 - 268	2.7e-13	AAA lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74310 AT1G74310 AT4G14670
fragaria_vesca	FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_7g22310 FvH4_7g22310 FvH4_7g22310
malus_domestica	MD06G1201600.v1.1 MD14G1210600.v1.1 MD14G1211000.v1.1
prunus_persica	Prupe.5G203700_v2.0.a1
pyrus_communis	pycom06g17750 pycom14g17400
rosa_chinensis	RchiOBHm_Chr1g0366791 RchiOBHm_Chr7g0182871 RchiOBHm_Chr7g0182901
rosa_laevigata	RLG00000005096 RLG00000005098 RLG00000027319
rosa_multiflora	Rmu_sc0000014.1_g000026 Rmu_sc0000318.1_g000026
rosa_roxburghii	Rroxscaffold_3G00230950 Rroxscaffold_3G00270960
rosa_rugosa	Rorug01G0331900 Rorug01G0333200 Rorug06G0451000
rosa_samantha	Rh1AG340000 Rh7AG054200 Rh7AG403300 Rh7BG053700 Rh7CG055300 Rh7DG053500 Rh7DG053600
rosa_wichuraiana	Rw0G008600 Rw1G030200 Rw7G004420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	181, 267
AclWI	GGATC	2 cut(s)	119, 132
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	3 cut(s)	533, 711, 741
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	6 cut(s)	134, 208, 221, 501, 502, 574
AgsI	TTSAA	4 cut(s)	155, 370, 590, 800
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	7 cut(s)	23, 103, 121, 683, 715, 728, 779
AluI	AGCT	7 cut(s)	23, 103, 121, 683, 715, 728, 779
Alw21I	GWGCWC	2 cut(s)	17, 432
Alw26I	GTCTC	2 cut(s)	558, 745
Alw44I	GTGCAC	1 cut(s)	428
AlwI	GGATC	2 cut(s)	119, 132
AlwNI	CAGNNNCTG	1 cut(s)	23
ApaLI	GTGCAC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	452, 473
ApoI	RAATTY	1 cut(s)	168
Asp700I	GAANNNNTTC	2 cut(s)	24, 780
AsuHPI	GGTGA	2 cut(s)	281, 518
AsuII	TTCGAA	1 cut(s)	784
AsuNHI	GCTAGC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	124
BbsI	GAAGAC	3 cut(s)	145, 233, 314
Bbv12I	GWGCWC	2 cut(s)	17, 432
BbvI	GCAGC	2 cut(s)	460, 464
BccI	CCATC	1 cut(s)	619
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	558, 745
BfaI	CTAG	4 cut(s)	74, 104, 536, 729
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	2 cut(s)	453, 474
BlsI	GCNGC	2 cut(s)	454, 475
Bme1390I	CCNGG	1 cut(s)	216
BmiI	GGNNCC	5 cut(s)	49, 88, 126, 213, 526
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	54, 460
BmtI	GCTAGC	1 cut(s)	107
BpiI	GAAGAC	3 cut(s)	145, 233, 314
Bpu14I	TTCGAA	1 cut(s)	784
BsaI	GGTCTC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	346, 762
Bsc4I	CCNNNNNNNGG	6 cut(s)	134, 208, 221, 501, 502, 574
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	346, 762
BseLI	CCNNNNNNNGG	6 cut(s)	134, 208, 221, 501, 502, 574
BseMII	CTCAG	1 cut(s)	740
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	2 cut(s)	92, 125
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	460, 464
BseYI	CCCAGC	1 cut(s)	568
BsiHKAI	GWGCWC	2 cut(s)	17, 432
BslI	CCNNNNNNNGG	6 cut(s)	134, 208, 221, 501, 502, 574
BsmAI	GTCTC	2 cut(s)	558, 745
Bso31I	GGTCTC	1 cut(s)	558
Bsp119I	TTCGAA	1 cut(s)	784
Bsp1286I	GDGCHC	2 cut(s)	17, 432
Bsp143I	GATC	4 cut(s)	124, 640, 676, 733
BspACI	CCGC	2 cut(s)	181, 267
BspCNI	CTCAG	1 cut(s)	741
BspLI	GGNNCC	5 cut(s)	49, 88, 126, 213, 526
BspOI	GCTAGC	1 cut(s)	107
BspPI	GGATC	2 cut(s)	119, 132
BspT104I	TTCGAA	1 cut(s)	784
BspTNI	GGTCTC	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	346, 762
BssMI	GATC	4 cut(s)	124, 640, 676, 733
BssT1I	CCWWGG	1 cut(s)	762
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	784
BstC8I	GCNNGC	3 cut(s)	105, 179, 265
BstDEI	CTNAG	2 cut(s)	99, 749
BstDSI	CCRYGG	1 cut(s)	346
BstKTI	GATC	4 cut(s)	127, 643, 679, 736
BstMAI	GTCTC	2 cut(s)	558, 745
BstMBI	GATC	4 cut(s)	124, 640, 676, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 461, 470
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	460, 464
BstV2I	GAAGAC	3 cut(s)	145, 233, 314
BstX2I	RGATCY	2 cut(s)	124, 733
BstYI	RGATCY	2 cut(s)	124, 733
BtgI	CCRYGG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	3 cut(s)	105, 179, 265
CaiI	CAGNNNCTG	1 cut(s)	23
CsiI	ACCWGGT	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	1 cut(s)	707
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	2 cut(s)	99, 749
DpnI	GATC	4 cut(s)	126, 642, 678, 735
DpnII	GATC	4 cut(s)	124, 640, 676, 733
Eco130I	CCWWGG	1 cut(s)	762
Eco31I	GGTCTC	1 cut(s)	558
Eco57I	CTGAAG	3 cut(s)	533, 711, 741
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	1 cut(s)	710
FaiI	YATR	5 cut(s)	84, 317, 482, 708, 808
FatI	CATG	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	453, 474
Fsp4HI	GCNGC	2 cut(s)	453, 474
FspBI	CTAG	4 cut(s)	74, 104, 536, 729
GluI	GCNGC	2 cut(s)	453, 474
GsaI	CCCAGC	1 cut(s)	572
Hin1II	CATG	1 cut(s)	710
HphI	GGTGA	2 cut(s)	281, 518
Hpy166II	GTNNAC	3 cut(s)	430, 509, 619
Hpy188I	TCNGA	1 cut(s)	691
Hpy188III	TCNNGA	5 cut(s)	74, 311, 536, 605, 737
Hpy8I	GTNNAC	3 cut(s)	430, 509, 619
HpyAV	CCTTC	3 cut(s)	236, 292, 452
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	6 cut(s)	233, 263, 430, 476, 500, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 461, 470
HpyF3I	CTNAG	2 cut(s)	99, 749
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	1 cut(s)	710
Kzo9I	GATC	4 cut(s)	124, 640, 676, 733
LmnI	GCTCC	3 cut(s)	443, 449, 524
Lsp1109I	GCAGC	2 cut(s)	460, 464
LweI	GCATC	2 cut(s)	54, 460
MabI	ACCWGGT	1 cut(s)	214
MaeI	CTAG	4 cut(s)	74, 104, 536, 729
MaeII	ACGT	1 cut(s)	583
MalI	GATC	4 cut(s)	126, 642, 678, 735
MboI	GATC	4 cut(s)	124, 640, 676, 733
MboII	GAAGA	8 cut(s)	150, 196, 199, 238, 314, 382, 734, 781
MfeI	CAATTG	2 cut(s)	234, 663
MflI	RGATCY	2 cut(s)	124, 733
MhlI	GDGCHC	2 cut(s)	17, 432
MluCI	AATT	9 cut(s)	69, 150, 168, 234, 258, 378, 408, 438, 663
MmeI	TCCRAC	3 cut(s)	13, 19, 115
MnlI	CCTC	7 cut(s)	70, 103, 106, 283, 352, 376, 418
MroXI	GAANNNNTTC	2 cut(s)	24, 780
MseI	TTAA	3 cut(s)	437, 485, 597
MspR9I	CCNGG	1 cut(s)	216
MunI	CAATTG	2 cut(s)	234, 663
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	452, 461, 470
NdeII	GATC	4 cut(s)	124, 640, 676, 733
NheI	GCTAGC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	710
NlaIV	GGNNCC	5 cut(s)	49, 88, 126, 213, 526
NspV	TTCGAA	1 cut(s)	784
PdmI	GAANNNNTTC	2 cut(s)	24, 780
PkrI	GCNGC	2 cut(s)	454, 475
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	5 cut(s)	49, 88, 126, 213, 526
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	124, 733
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	437, 485, 597
SatI	GCNGC	2 cut(s)	453, 474
Sau3AI	GATC	4 cut(s)	124, 640, 676, 733
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	2 cut(s)	17, 432
SexAI	ACCWGGT	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	54, 460
SfuI	TTCGAA	1 cut(s)	784
Sse9I	AATT	9 cut(s)	69, 150, 168, 234, 258, 378, 408, 438, 663
SsiI	CCGC	2 cut(s)	181, 267
SspMI	CTAG	4 cut(s)	74, 104, 536, 729
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	3 cut(s)	357, 679, 784
TasI	AATT	9 cut(s)	69, 150, 168, 234, 258, 378, 408, 438, 663
Tru1I	TTAA	3 cut(s)	437, 485, 597
Tru9I	TTAA	3 cut(s)	437, 485, 597
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	2 cut(s)	452, 473
TspDTI	ATGAA	1 cut(s)	789
TspRI	CASTG	1 cut(s)	58
VneI	GTGCAC	1 cut(s)	428
XapI	RAATTY	1 cut(s)	168
XbaI	TCTAGA	2 cut(s)	73, 535
XmnI	GAANNNNTTC	2 cut(s)	24, 780
XspI	CTAG	4 cut(s)	74, 104, 536, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.