Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002819

Physical Location & Seq

Genomic Coordinates Forward (+)

45150587 .. 45153116

Gene Structure 2530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0333200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAAGAAATTCAAGAGCATGTTGAAGCCGAAGCCAAACCCAACAGAGCAACTCAAGGATTGGCAGAGACGACTTCGCCAGGAGAGCCGCAACATTGAGCGCCAAATCAGAGATCTTGAGAGAGAAGAGAAGGTGGTACAGAAAGCTATTAGAGAAGCTGCAAAGAGAAATGACATGGGCTCAGCAAAGTCACTTGCAAGGGAGATTTTGGGGTCGAGGAAAGCTGTAAGTCGCCTTCAGGAGAATAAAGCCCAACTGAATTCGATTGCGATGCACCTGGGAGAAAGTGTTGCACTTGCCCGTACTGTGGGTCATCTATCGAAGAGTACAGAGGTCATGAAGCTTGTTAATGAACTCACGAAAGCTCCAGAAATGGCTGTCACAATGCAAGAATTTACCAAAGAAATAACCAAGGCTGGGCTGATTGAAGAAGTTGTAAACGATACTCTTGATACAGCATTAGATTCGGAAGATATAGAAGAGGAAACTGAGGAAGAAGTTGAGAAGGTTCTGAGTCAAATAGCTGGTGAGACGGCTGCCCAGCTTCCTGAAGCTGTCAGGAAAGAGAGGATCAAGTTACCTGCCCAGGGAGCTAGTGGTTCACGAGAAGAAGAAGCTACAGCAGAAGGTTCAGATGATGAGGAAGAATTGGAAGCGTTGAGAGCGCGGCTTGCTCAAGTCAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0034605 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043335 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

229

Amino Acids

25.73

Weight (kDa)

5.36

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	21 - 188	7.3e-31	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74310 AT1G74310 AT4G14670
fragaria_vesca	FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_7g22310 FvH4_7g22310 FvH4_7g22310
malus_domestica	MD06G1201600.v1.1 MD14G1210600.v1.1 MD14G1211000.v1.1
prunus_persica	Prupe.5G203700_v2.0.a1
pyrus_communis	pycom06g17750 pycom14g17400
rosa_chinensis	RchiOBHm_Chr1g0366791 RchiOBHm_Chr7g0182871 RchiOBHm_Chr7g0182901
rosa_laevigata	RLG00000005096 RLG00000005098 RLG00000027319
rosa_multiflora	Rmu_sc0000014.1_g000026 Rmu_sc0000318.1_g000026
rosa_roxburghii	Rroxscaffold_3G00230950 Rroxscaffold_3G00270960
rosa_rugosa	Rorug01G0331900 Rorug01G0333200 Rorug06G0451000
rosa_samantha	Rh1AG340000 Rh7AG054200 Rh7AG403300 Rh7BG053700 Rh7CG055300 Rh7DG053500 Rh7DG053600
rosa_wichuraiana	Rw0G008600 Rw1G030200 Rw7G004420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	589
AccII	CGCG	1 cut(s)	667
AciI	CCGC	2 cut(s)	88, 667
AclWI	GGATC	1 cut(s)	578
AcsI	RAATTY	3 cut(s)	8, 259, 392
AcuI	CTGAAG	2 cut(s)	221, 570
AfaI	GTAC	3 cut(s)	138, 304, 328
AfiI	CCNNNNNNNGG	3 cut(s)	307, 417, 587
AgsI	TTSAA	3 cut(s)	13, 25, 428
AjnI	CCWGG	3 cut(s)	78, 276, 585
Alw26I	GTCTC	2 cut(s)	61, 524
AlwI	GGATC	1 cut(s)	578
ApeKI	GCWGC	2 cut(s)	158, 536
ApoI	RAATTY	3 cut(s)	8, 259, 392
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	102, 667
AsuHPI	GGTGA	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	219, 251
BauI	CACGAG	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	145, 523
BceAI	ACGGC	1 cut(s)	549
BcgI	CGANNNNNNTGC	4 cut(s)	253, 287, 447, 481
BciT130I	CCWGG	3 cut(s)	80, 278, 587
BcoDI	GTCTC	2 cut(s)	61, 524
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	4 cut(s)	88, 159, 537, 668
BlpI	GCTNAGC	1 cut(s)	181
BlsI	GCNGC	4 cut(s)	89, 160, 538, 669
Bme1390I	CCNGG	3 cut(s)	80, 278, 587
BmrFI	CCNGG	3 cut(s)	80, 278, 587
BmsI	GCATC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	351
Bpu1102I	GCTNAGC	1 cut(s)	181
BpuEI	CTTGAG	3 cut(s)	38, 137, 660
BsaJI	CCNNGG	4 cut(s)	277, 411, 585, 586
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 349, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 417, 587
BseBI	CCWGG	3 cut(s)	80, 278, 587
BseDI	CCNNGG	4 cut(s)	277, 411, 585, 586
BseLI	CCNNNNNNNGG	3 cut(s)	307, 417, 587
BseMII	CTCAG	3 cut(s)	195, 480, 503
BseXI	GCAGC	2 cut(s)	145, 523
BseYI	CCCAGC	2 cut(s)	416, 540
Bsh1236I	CGCG	1 cut(s)	667
BslI	CCNNNNNNNGG	3 cut(s)	307, 417, 587
BsmAI	GTCTC	2 cut(s)	61, 524
BsmBI	CGTCTC	2 cut(s)	61, 524
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	112, 570, 683
Bsp1720I	GCTNAGC	1 cut(s)	181
BspACI	CCGC	2 cut(s)	88, 667
BspCNI	CTCAG	3 cut(s)	194, 481, 504
BspFNI	CGCG	1 cut(s)	667
BspHI	TCATGA	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	1 cut(s)	578
BssECI	CCNNGG	4 cut(s)	277, 411, 585, 586
BssMI	GATC	3 cut(s)	112, 570, 683
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	3 cut(s)	80, 278, 587
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	3 cut(s)	120, 317, 474
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	3 cut(s)	181, 489, 512
BstFNI	CGCG	1 cut(s)	667
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	102, 667
BstKTI	GATC	3 cut(s)	115, 573, 686
BstMAI	GTCTC	2 cut(s)	61, 524
BstMBI	GATC	3 cut(s)	112, 570, 683
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 590, 662, 671
BstNI	CCWGG	3 cut(s)	80, 278, 587
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	78, 276, 585
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	1 cut(s)	667
BstV1I	GCAGC	2 cut(s)	145, 523
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	672
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	102, 667
Csp6I	GTAC	3 cut(s)	137, 303, 327
CviAII	CATG	3 cut(s)	19, 175, 337
CviQI	GTAC	3 cut(s)	137, 303, 327
DdeI	CTNAG	3 cut(s)	181, 489, 512
DpnI	GATC	3 cut(s)	114, 572, 685
DpnII	GATC	3 cut(s)	112, 570, 683
Eam1104I	CTCTTC	3 cut(s)	120, 317, 474
EarI	CTCTTC	3 cut(s)	120, 317, 474
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	221, 570
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	78, 276, 585
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	411
Esp3I	CGTCTC	2 cut(s)	61, 524
FaeI	CATG	3 cut(s)	22, 178, 340
FaiI	YATR	5 cut(s)	20, 176, 338, 476, 688
FatI	CATG	3 cut(s)	18, 174, 336
Fnu4HI	GCNGC	4 cut(s)	88, 159, 537, 668
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	4 cut(s)	88, 159, 537, 668
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	2 cut(s)	101, 666
GluI	GCNGC	4 cut(s)	88, 159, 537, 668
GsaI	CCCAGC	2 cut(s)	420, 544
GsuI	CTGGAG	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	103
HhaI	GCGC	2 cut(s)	102, 667
Hin1II	CATG	3 cut(s)	22, 178, 340
Hin6I	GCGC	2 cut(s)	100, 665
HinP1I	GCGC	2 cut(s)	100, 665
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	464, 514
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	2 cut(s)	439, 602
Hpy188I	TCNGA	5 cut(s)	110, 469, 513, 634, 683
Hpy8I	GTNNAC	2 cut(s)	439, 602
HpyAV	CCTTC	4 cut(s)	124, 245, 499, 620
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	5 cut(s)	161, 197, 274, 293, 388
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 590, 662, 671
HpyF3I	CTNAG	3 cut(s)	181, 489, 512
Hsp92II	CATG	3 cut(s)	22, 178, 340
HspAI	GCGC	2 cut(s)	100, 665
Kzo9I	GATC	3 cut(s)	112, 570, 683
LmnI	GCTCC	2 cut(s)	370, 590
Lsp1109I	GCAGC	2 cut(s)	145, 523
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	594
MaeIII	GTNAC	3 cut(s)	189, 379, 576
MalI	GATC	3 cut(s)	114, 572, 685
MboI	GATC	3 cut(s)	112, 570, 683
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	4 cut(s)	8, 259, 392, 647
MlyI	GAGTC	1 cut(s)	523
MnlI	CCTC	6 cut(s)	210, 325, 475, 484, 561, 634
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	348
MspR9I	CCNGG	3 cut(s)	80, 278, 587
MvaI	CCWGG	3 cut(s)	80, 278, 587
MvnI	CGCG	1 cut(s)	667
MwoI	GCNNNNNNNGC	4 cut(s)	84, 590, 662, 671
NdeII	GATC	3 cut(s)	112, 570, 683
NlaIII	CATG	3 cut(s)	22, 178, 340
NmuCI	GTSAC	2 cut(s)	189, 379
NspI	RCATGY	1 cut(s)	22
PagI	TCATGA	1 cut(s)	336
PasI	CCCWGGG	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	4 cut(s)	89, 160, 538, 669
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
Psp6I	CCWGG	3 cut(s)	78, 276, 585
PspFI	CCCAGC	2 cut(s)	416, 540
PspGI	CCWGG	3 cut(s)	78, 276, 585
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	3 cut(s)	138, 304, 328
RsaNI	GTAC	3 cut(s)	137, 303, 327
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	4 cut(s)	88, 159, 537, 668
Sau3AI	GATC	3 cut(s)	112, 570, 683
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	3 cut(s)	80, 278, 587
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	618
SmlI	CTYRAG	3 cut(s)	53, 116, 675
SmoI	CTYRAG	3 cut(s)	53, 116, 675
Sse9I	AATT	4 cut(s)	8, 259, 392, 647
SsiI	CCGC	2 cut(s)	88, 667
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	3 cut(s)	78, 276, 585
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	215, 263, 320
TasI	AATT	4 cut(s)	8, 259, 392, 647
TatI	WGTACW	1 cut(s)	326
TauI	GCSGC	2 cut(s)	90, 670
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	189, 379
TseI	GCWGC	2 cut(s)	158, 536
Tsp45I	GTSAC	2 cut(s)	189, 379
TspDTI	ATGAA	3 cut(s)	17, 353, 366
XapI	RAATTY	3 cut(s)	8, 259, 392
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.