Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002819

Physical Location & Seq

Genomic Coordinates Forward (+)

58059499 .. 58062150

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGACACTCACAGCATTGAAGACTTATGGAAGGGACATTGTTGAGCAAGCAGCGAAGTTCGACCCAGTCATTGGACGAGACCAGGAGATAAGGAGGGTGGTTCAGAATCTCTCAAGGAGAACGAAGAGCAACCCAATTCTAATTGGAGAGCCGGGAGTTGGAAAAACTGCTGTAGTTGAAGGCTTGGCTCAGAGGATCATAAGAGGGGATGTCCCTAGTAGCCTTGCCAATGTAAGGATCATAGAACTGGATATGGGCGCTTTGCTGGCTGGGACGCAGTATAGAGGAGAATTTGAGGAGAGGTTAAAGGCTGTTTTGAAAGAAGTGGAAGAGGCTGAAGGTAAGGTCATTCTCTTCATTGATGAGATTCACCTTGTTCTTGGTGCTGGTAGAGCGGGGGGATCTATGGATGCAGCCAACCTCTTTAAGCCAATGCTTGCTAGAGGTCAGTTGCGGTGCATTGGTGCAACGACTCTTGAAGAATACAGGAAATATGTGGAGAAGGATGCTGCATTTGCGAGAAGGTTCCAAAAGATTATTGTGGATGAACCTAGTGTTGAAGACACAATTAGTATCCTCCGAGGATTGAAAGAGAGATACGAAAGTCACCATGGTGTTCGAATTTTGGACCGTGCCTTAATTGTTGCTGCGCAACTTTCAAGCCGATATATTACAGGGCGTCATCTCCCTGACAAGGCAATTGATCTGTTAGATGAGGCTTGTGCAAATGTGAGAGTCCGACTTGATAGTCAGCCTGAAGAAATCGATGACCTTGAAAGAAAGATAATGCAGCGGGAAGTTGAGGTTCATGCACATGAGAAAGAAAGGGATATAACTAACATAGTTCGCCTTGTTGAAGTGCGAAAAGAGCTTGATGACTTAAGAGACAAATTGCAGTCCTTGATGATAAAATATGGAATTGAGAAGCAAAGGATTGATGAAAGTCAACGGTTTAAGCAGAAGCGTGAAAAGCTGTTGATTTCTTTAGCAGAGGCTGAAAGAAGATGTGATTATGCCAAGGTTGCTGACTTGCGTTATGGAGCTATTCAGGAGTTGGAATCTGCCATTGCACAGCTTGATGGGAGCAGCAATGACAACTTGATGTTGACAGAGAAAGTTGTACCAGAACACATTGCAGAGGTTGTAAGCCGTTCTACTGGCATACCTGTGACGAGGCTTGACCAGAATGGAAAAGAGAGGTTAATTGGACTTTCCGAGAGCTTGCATAAAAGAGTAGTTGGCCAAGAACAGGCAGTTGATGCTGTTGCAGAGGCAGTGTTGAGGTCTAGAGCTGGTCTTGGCAGGCCAGAACAGCCAACTGGTTCCTTCTTATTTTTGGGTCCAACTGGTGTCGGAAAAACTGAGCTCGCAAAGGCCCTTGCTGAGCAACTGTTTGATGATGAAAATCTAATCGTAAGAATAGACATGTCTGAGTACATGGAACGACACTCGGTTTCCCGCTTGATTGGTTCTCCTCCTGGGTATGTTGGTTATGAGGATGGTGGGCAACTGACTGAGGCCGTAAGACGGAGACCTTATAGTGTTGTCTTATTTGATGAAGCGGAAAAGGCACACAGCTCTGTGTTTAATGTTCTCCTACAAGTTTTAGATGATGGAAGGTTAACTGATGGACAAGGTGTTGTCGTGGACTTCAGAAATACTTTGATTATTCTGACCTCTAACCTTGGAGCAAAGCATCTCCTTTCTGGTTTAACAGGAGAGTGTACAATGAAAGATGCTCGTGACCTAGTTATGCCAGAGGTGAGAAGTCACTTTAGTCCTGAATTACTAAATAGGCTTGATGAGATTGTCATATTTGATCCTCTTTCACACGAGCAATTAAAGAAGGTGGCCAGGTTGCAGATGAAGGATGTTGCTGTCCGACTTGCTGATAGGGGTGTTACTTTGGAATTGACTGATGCAGCATTGAATTATATCATGGATATGAGTTATGATCCGGTTTATGGTGCTAGACCAATCAGGAGATGGCTTGAGAAGAAAGTGGTGACGGAATTATCAAGAATGTTGGTTAAAGAAGAGATGAATGAGAACTCAACAGTATACATAAATGCAGGAGTGAATGGAAGTGAGTTGGTGTATAGGGTTGAGAAGAATGGAAGCAGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0034605 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043335 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

709

Amino Acids

79.48

Weight (kDa)

5.76

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_16	PF13191	23 - 74	3.9e-06	AAA ATPase domain
NBD_SMAX1	PF23569	28 - 126	2.1e-09	SMAX1 nucleotide binding domain
AAA	PF00004	46 - 179	1.7e-13	ATPase family associated with various cellular activities (AAA)
AAA_lid_9	PF17871	185 - 279	2.1e-33	AAA lid domain
AAA_2	PF07724	439 - 603	2.8e-66	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	443 - 561	2.5e-11	AAA domain (dynein-related subfamily)
AAA	PF00004	444 - 562	3.3e-08	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	609 - 688	2.1e-23	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74310 AT1G74310 AT4G14670
fragaria_vesca	FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_5g14020 FvH4_7g22310 FvH4_7g22310 FvH4_7g22310
malus_domestica	MD06G1201600.v1.1 MD14G1210600.v1.1 MD14G1211000.v1.1
prunus_persica	Prupe.5G203700_v2.0.a1
pyrus_communis	pycom06g17750 pycom14g17400
rosa_chinensis	RchiOBHm_Chr1g0366791 RchiOBHm_Chr7g0182871 RchiOBHm_Chr7g0182901
rosa_laevigata	RLG00000005096 RLG00000005098 RLG00000027319
rosa_multiflora	Rmu_sc0000014.1_g000026 Rmu_sc0000318.1_g000026
rosa_roxburghii	Rroxscaffold_3G00230950 Rroxscaffold_3G00270960
rosa_rugosa	Rorug01G0331900 Rorug01G0333200 Rorug06G0451000
rosa_samantha	Rh1AG340000 Rh7AG054200 Rh7AG403300 Rh7BG053700 Rh7CG055300 Rh7DG053500 Rh7DG053600
rosa_wichuraiana	Rw0G008600 Rw1G030200 Rw7G004420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	747
Acc16I	TGCGCA	1 cut(s)	651
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	2061
AciI	CCGC	5 cut(s)	395, 454, 793, 1459, 1562
AclWI	GGATC	5 cut(s)	203, 245, 409, 1814, 1949
AcoI	YGGCCR	2 cut(s)	1240, 1851
AcsI	RAATTY	2 cut(s)	290, 621
AcuI	CTGAAG	3 cut(s)	357, 777, 1636
AcyI	GRCGYC	1 cut(s)	679
AfaI	GTAC	3 cut(s)	1122, 1436, 1726
AfiI	CCNNNNNNNGG	7 cut(s)	71, 158, 234, 694, 1249, 1527, 1964
AflII	CTTAAG	1 cut(s)	880
AflIII	ACRYGT	1 cut(s)	1425
AjnI	CCWGG	3 cut(s)	81, 1477, 1853
AleI	CACNNNNGTG	1 cut(s)	612
AluBI	AGCT	8 cut(s)	871, 973, 1043, 1075, 1221, 1292, 1366, 1578
AluI	AGCT	8 cut(s)	871, 973, 1043, 1075, 1221, 1292, 1366, 1578
Alw21I	GWGCWC	1 cut(s)	1368
Alw26I	GTCTC	3 cut(s)	72, 879, 1525
AlwI	GGATC	5 cut(s)	203, 245, 409, 1814, 1949
AlwNI	CAGNNNCTG	1 cut(s)	995
AoxI	GGCC	5 cut(s)	1240, 1304, 1374, 1518, 1851
ApeKI	GCWGC	7 cut(s)	50, 413, 509, 647, 790, 1086, 1922
ApoI	RAATTY	2 cut(s)	290, 621
AspLEI	GCGC	2 cut(s)	260, 652
AspS9I	GGNCC	3 cut(s)	628, 1340, 1375
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	362, 599, 1774, 2017
AsuII	TTCGAA	1 cut(s)	619
AvaII	GGWCC	2 cut(s)	628, 1340
BaeI	ACNNNNGTAYC	2 cut(s)	589, 622
BalI	TGGCCA	2 cut(s)	1242, 1853
BanII	GRGCYC	1 cut(s)	1368
BauI	CACGAG	2 cut(s)	1740, 1832
BbsI	GAAGAC	2 cut(s)	26, 567
Bbv12I	GWGCWC	1 cut(s)	1368
BbvI	GCAGC	7 cut(s)	62, 425, 496, 634, 802, 1098, 1934
BccI	CCATC	5 cut(s)	1073, 1493, 1607, 1622, 1980
BceAI	ACGGC	2 cut(s)	1134, 1505
BciT130I	CCWGG	3 cut(s)	83, 1479, 1855
BciVI	GTATCC	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	3 cut(s)	72, 879, 1525
BfaI	CTAG	6 cut(s)	216, 441, 552, 1287, 1748, 1971
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	880
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	7 cut(s)	51, 414, 510, 648, 791, 1087, 1923
BlpI	GCTNAGC	1 cut(s)	1383
BlsI	GCNGC	7 cut(s)	52, 415, 511, 649, 792, 1088, 1924
Bme1390I	CCNGG	4 cut(s)	83, 153, 1479, 1855
Bme18I	GGWCC	2 cut(s)	628, 1340
BmgT120I	GGNCC	3 cut(s)	628, 1340, 1375
BmiI	GGNNCC	3 cut(s)	527, 1324, 1341
BmrFI	CCNGG	4 cut(s)	83, 153, 1479, 1855
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	6 cut(s)	400, 496, 1249, 1705, 1726, 1909
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	26, 567
Bpu1102I	GCTNAGC	1 cut(s)	1383
Bpu14I	TTCGAA	1 cut(s)	619
BpuEI	CTTGAG	2 cut(s)	97, 2012
BpuMI	CCSGG	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	765
BsaBI	GATNNNNATC	1 cut(s)	1404
BsaHI	GRCGYC	1 cut(s)	679
BsaI	GGTCTC	2 cut(s)	72, 1525
BsaJI	CCNNGG	5 cut(s)	580, 610, 1017, 1478, 1684
BsaWI	WCCGGW	1 cut(s)	1957
Bsc4I	CCNNNNNNNGG	7 cut(s)	71, 158, 234, 694, 1249, 1527, 1964
Bse1I	ACTGG	5 cut(s)	65, 252, 1162, 1324, 1351
Bse3DI	GCAATG	3 cut(s)	1065, 1096, 1131
Bse8I	GATNNNNATC	1 cut(s)	1404
BseBI	CCWGG	3 cut(s)	83, 1479, 1855
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	5 cut(s)	580, 610, 1017, 1478, 1684
BseGI	GGATG	6 cut(s)	214, 415, 511, 550, 1504, 1876
BseJI	GATNNNNATC	1 cut(s)	1404
BseLI	CCNNNNNNNGG	7 cut(s)	71, 158, 234, 694, 1249, 1527, 1964
BseMI	GCAATG	3 cut(s)	1065, 1096, 1131
BseMII	CTCAG	5 cut(s)	203, 1353, 1374, 1422, 1506
BseNI	ACTGG	5 cut(s)	65, 252, 1162, 1324, 1351
BseRI	GAGGAG	3 cut(s)	300, 311, 1464
BseXI	GCAGC	7 cut(s)	62, 425, 496, 634, 802, 1098, 1934
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	5 cut(s)	1242, 1306, 1376, 1520, 1853
BshVI	ATCGAT	1 cut(s)	765
BsiHKAI	GWGCWC	1 cut(s)	1368
BsiSI	CCGG	2 cut(s)	152, 1958
BslFI	GGGAC	3 cut(s)	47, 197, 286
BslI	CCNNNNNNNGG	7 cut(s)	71, 158, 234, 694, 1249, 1527, 1964
BsmAI	GTCTC	3 cut(s)	72, 879, 1525
BsmFI	GGGAC	3 cut(s)	47, 197, 286
BsnI	GGCC	5 cut(s)	1242, 1306, 1376, 1520, 1853
Bso31I	GGTCTC	2 cut(s)	72, 1525
Bsp119I	TTCGAA	1 cut(s)	619
Bsp1286I	GDGCHC	1 cut(s)	1368
Bsp1407I	TGTACA	1 cut(s)	1724
Bsp143I	GATC	6 cut(s)	195, 237, 401, 703, 1819, 1954
Bsp1720I	GCTNAGC	1 cut(s)	1383
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	5 cut(s)	395, 454, 793, 1459, 1562
BspANI	GGCC	5 cut(s)	1242, 1306, 1376, 1520, 1853
BspCNI	CTCAG	5 cut(s)	202, 1354, 1375, 1423, 1507
BspDI	ATCGAT	1 cut(s)	765
BspLI	GGNNCC	3 cut(s)	527, 1324, 1341
BspPI	GGATC	5 cut(s)	203, 245, 409, 1814, 1949
BspQI	GCTCTTC	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	619
BspTI	CTTAAG	1 cut(s)	880
BspTNI	GGTCTC	2 cut(s)	72, 1525
BsrBI	CCGCTC	1 cut(s)	395
BsrDI	GCAATG	3 cut(s)	1065, 1096, 1131
BsrGI	TGTACA	1 cut(s)	1724
BsrI	ACTGG	5 cut(s)	65, 252, 1162, 1324, 1351
BssECI	CCNNGG	5 cut(s)	580, 610, 1017, 1478, 1684
BssMI	GATC	6 cut(s)	195, 237, 401, 703, 1819, 1954
BssNAI	GTATAC	1 cut(s)	2062
BssNI	GRCGYC	1 cut(s)	679
BssSI	CACGAG	2 cut(s)	1740, 1832
BssT1I	CCWWGG	3 cut(s)	610, 1017, 1684
Bst1107I	GTATAC	1 cut(s)	2062
Bst2BI	CACGAG	2 cut(s)	1740, 1832
Bst2UI	CCWGG	3 cut(s)	83, 1479, 1855
Bst4CI	ACNGT	4 cut(s)	632, 951, 1392, 2059
Bst6I	CTCTTC	4 cut(s)	119, 324, 359, 2031
BstACI	GRCGYC	1 cut(s)	679
BstAFI	CTTAAG	1 cut(s)	880
BstAPI	GCANNNNNTGC	1 cut(s)	1259
BstAUI	TGTACA	1 cut(s)	1724
BstBI	TTCGAA	1 cut(s)	619
BstC8I	GCNNGC	6 cut(s)	48, 267, 438, 1223, 1304, 1368
BstDEI	CTNAG	5 cut(s)	189, 1362, 1383, 1431, 1515
BstDSI	CCRYGG	1 cut(s)	610
BstF5I	GGATG	6 cut(s)	214, 415, 511, 550, 1504, 1876
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	260, 652
BstKTI	GATC	6 cut(s)	198, 240, 404, 706, 1822, 1957
BstMAI	GTCTC	3 cut(s)	72, 879, 1525
BstMBI	GATC	6 cut(s)	195, 237, 401, 703, 1819, 1954
BstMWI	GCNNNNNNNGC	9 cut(s)	266, 392, 515, 868, 970, 1022, 1259, 1312, 1568
BstNI	CCWGG	3 cut(s)	83, 1479, 1855
BstNSI	RCATGY	1 cut(s)	1429
BstSCI	CCNGG	4 cut(s)	81, 151, 1477, 1853
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	7 cut(s)	62, 425, 496, 634, 802, 1098, 1934
BstV2I	GAAGAC	2 cut(s)	26, 567
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BstZ17I	GTATAC	1 cut(s)	2062
Bsu15I	ATCGAT	1 cut(s)	765
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	5 cut(s)	1242, 1306, 1376, 1520, 1853
BsuTUI	ATCGAT	1 cut(s)	765
BtgI	CCRYGG	1 cut(s)	610
BtsCI	GGATG	6 cut(s)	214, 415, 511, 550, 1504, 1876
BtsI	GCAGTG	1 cut(s)	1281
BtsIMutI	CAGTG	1 cut(s)	1281
Cac8I	GCNNGC	6 cut(s)	48, 267, 438, 1223, 1304, 1368
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	2 cut(s)	260, 652
Cfr13I	GGNCC	3 cut(s)	628, 1340, 1375
ClaI	ATCGAT	1 cut(s)	765
CseI	GACGC	2 cut(s)	283, 668
Csp6I	GTAC	3 cut(s)	1121, 1435, 1725
CviAII	CATG	6 cut(s)	611, 809, 815, 1426, 1438, 1939
CviQI	GTAC	3 cut(s)	1121, 1435, 1725
DdeI	CTNAG	5 cut(s)	189, 1362, 1383, 1431, 1515
DpnI	GATC	6 cut(s)	197, 239, 403, 705, 1821, 1956
DpnII	GATC	6 cut(s)	195, 237, 401, 703, 1819, 1954
DrdI	GACNNNNNNGTC	1 cut(s)	747
DseDI	GACNNNNNNGTC	1 cut(s)	747
EaeI	YGGCCR	2 cut(s)	1240, 1851
Eam1104I	CTCTTC	4 cut(s)	119, 324, 359, 2031
EarI	CTCTTC	4 cut(s)	119, 324, 359, 2031
Ecl136II	GAGCTC	1 cut(s)	1366
Eco130I	CCWWGG	3 cut(s)	610, 1017, 1684
Eco24I	GRGCYC	1 cut(s)	1368
Eco31I	GGTCTC	2 cut(s)	72, 1525
Eco47I	GGWCC	2 cut(s)	628, 1340
Eco53kI	GAGCTC	1 cut(s)	1366
Eco57I	CTGAAG	3 cut(s)	357, 777, 1636
EcoICRI	GAGCTC	1 cut(s)	1366
EcoO109I	RGGNCCY	1 cut(s)	1375
EcoRII	CCWGG	3 cut(s)	81, 1477, 1853
EcoT14I	CCWWGG	3 cut(s)	610, 1017, 1684
EcoT38I	GRGCYC	1 cut(s)	1368
ErhI	CCWWGG	3 cut(s)	610, 1017, 1684
FaeI	CATG	6 cut(s)	614, 812, 818, 1429, 1441, 1942
FaqI	GGGAC	3 cut(s)	47, 197, 286
FatI	CATG	6 cut(s)	610, 808, 814, 1425, 1437, 1938
FauI	CCCGC	3 cut(s)	388, 786, 1466
FblI	GTMKAC	1 cut(s)	2061
Fnu4HI	GCNGC	7 cut(s)	51, 414, 510, 648, 791, 1087, 1923
FokI	GGATG	6 cut(s)	221, 422, 518, 557, 1511, 1883
FriOI	GRGCYC	1 cut(s)	1368
Fsp4HI	GCNGC	7 cut(s)	51, 414, 510, 648, 791, 1087, 1923
FspBI	CTAG	6 cut(s)	216, 441, 552, 1287, 1748, 1971
FspI	TGCGCA	1 cut(s)	651
GlaI	GCGC	2 cut(s)	259, 651
GluI	GCNGC	7 cut(s)	51, 414, 510, 648, 791, 1087, 1923
GsaI	CCCAGC	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	5 cut(s)	1242, 1306, 1376, 1520, 1853
HapII	CCGG	2 cut(s)	152, 1958
HgaI	GACGC	2 cut(s)	283, 668
HhaI	GCGC	2 cut(s)	260, 652
Hin1I	GRCGYC	1 cut(s)	679
Hin1II	CATG	6 cut(s)	614, 812, 818, 1429, 1441, 1942
Hin6I	GCGC	2 cut(s)	258, 650
HinP1I	GCGC	2 cut(s)	258, 650
HincII	GTYRAC	3 cut(s)	947, 1107, 1623
HindII	GTYRAC	3 cut(s)	947, 1107, 1623
HinfI	GANTC	5 cut(s)	106, 367, 472, 735, 1058
HpaI	GTTAAC	1 cut(s)	1623
HpaII	CCGG	2 cut(s)	152, 1958
HphI	GGTGA	4 cut(s)	362, 599, 1774, 2017
Hpy166II	GTNNAC	6 cut(s)	947, 1107, 1623, 1648, 1725, 2062
Hpy188III	TCNNGA	7 cut(s)	476, 1049, 1287, 1742, 1781, 1981, 2019
Hpy8I	GTNNAC	6 cut(s)	947, 1107, 1623, 1648, 1725, 2062
HpyAV	CCTTC	9 cut(s)	24, 173, 332, 496, 516, 1336, 1611, 1840, 1861
HpyCH4III	ACNGT	4 cut(s)	632, 951, 1392, 2059
HpyF10VI	GCNNNNNNNGC	9 cut(s)	266, 392, 515, 868, 970, 1022, 1259, 1312, 1568
HpyF3I	CTNAG	5 cut(s)	189, 1362, 1383, 1431, 1515
Hsp92I	GRCGYC	1 cut(s)	679
Hsp92II	CATG	6 cut(s)	614, 812, 818, 1429, 1441, 1942
HspAI	GCGC	2 cut(s)	258, 650
KspAI	GTTAAC	1 cut(s)	1623
Kzo9I	GATC	6 cut(s)	195, 237, 401, 703, 1819, 1954
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	3 cut(s)	1040, 1083, 1688
Lsp1109I	GCAGC	7 cut(s)	62, 425, 496, 634, 802, 1098, 1934
LweI	GCATC	6 cut(s)	400, 496, 1249, 1705, 1726, 1909
MaeI	CTAG	6 cut(s)	216, 441, 552, 1287, 1748, 1971
MaeIII	GTNAC	6 cut(s)	605, 1168, 1742, 1769, 1900, 2005
MalI	GATC	6 cut(s)	197, 239, 403, 705, 1821, 1956
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	6 cut(s)	195, 237, 401, 703, 1819, 1954
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	1368
MlsI	TGGCCA	2 cut(s)	1242, 1853
MluNI	TGGCCA	2 cut(s)	1242, 1853
MlyI	GAGTC	2 cut(s)	466, 744
MmeI	TCCRAC	6 cut(s)	139, 763, 1035, 1333, 1367, 1906
Mox20I	TGGCCA	2 cut(s)	1242, 1853
MscI	TGGCCA	2 cut(s)	1242, 1853
MslI	CAYNNNNRTG	4 cut(s)	612, 813, 1166, 1943
Msp20I	TGGCCA	2 cut(s)	1242, 1853
MspA1I	CMGCKG	1 cut(s)	793
MspCI	CTTAAG	1 cut(s)	880
MspI	CCGG	2 cut(s)	152, 1958
MspR9I	CCNGG	4 cut(s)	83, 153, 1479, 1855
MunI	CAATTG	1 cut(s)	699
MvaI	CCWGG	3 cut(s)	83, 1479, 1855
MwoI	GCNNNNNNNGC	9 cut(s)	266, 392, 515, 868, 970, 1022, 1259, 1312, 1568
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	610
NdeII	GATC	6 cut(s)	195, 237, 401, 703, 1819, 1954
NlaIII	CATG	6 cut(s)	614, 812, 818, 1429, 1441, 1942
NlaIV	GGNNCC	3 cut(s)	527, 1324, 1341
NmuCI	GTSAC	5 cut(s)	605, 1168, 1742, 1769, 2005
NsbI	TGCGCA	1 cut(s)	651
NspI	RCATGY	1 cut(s)	1429
NspV	TTCGAA	1 cut(s)	619
OliI	CACNNNNGTG	1 cut(s)	612
PciI	ACATGT	1 cut(s)	1425
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	3 cut(s)	106, 367, 1058
PflFI	GACNNNGTC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	7 cut(s)	52, 415, 511, 649, 792, 1088, 1924
PleI	GAGTC	2 cut(s)	466, 743
PpsI	GAGTC	2 cut(s)	466, 743
PscI	ACATGT	1 cut(s)	1425
Psp124BI	GAGCTC	1 cut(s)	1368
Psp6I	CCWGG	3 cut(s)	81, 1477, 1853
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	3 cut(s)	81, 1477, 1853
PspN4I	GGNNCC	3 cut(s)	527, 1324, 1341
PspPI	GGNCC	3 cut(s)	628, 1340, 1375
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	1 cut(s)	401
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	3 cut(s)	1122, 1436, 1726
RsaNI	GTAC	3 cut(s)	1121, 1435, 1725
RseI	CAYNNNNRTG	4 cut(s)	612, 813, 1166, 1943
SacI	GAGCTC	1 cut(s)	1368
SapI	GCTCTTC	1 cut(s)	119
SatI	GCNGC	7 cut(s)	51, 414, 510, 648, 791, 1087, 1923
Sau3AI	GATC	6 cut(s)	195, 237, 401, 703, 1819, 1954
Sau96I	GGNCC	3 cut(s)	628, 1340, 1375
SchI	GAGTC	2 cut(s)	466, 744
ScrFI	CCNGG	4 cut(s)	83, 153, 1479, 1855
SduI	GDGCHC	1 cut(s)	1368
SfaNI	GCATC	6 cut(s)	400, 496, 1249, 1705, 1726, 1909
SfcI	CTRYAG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	619
SinI	GGWCC	2 cut(s)	628, 1340
SmiMI	CAYNNNNRTG	4 cut(s)	612, 813, 1166, 1943
SmlI	CTYRAG	3 cut(s)	112, 880, 1991
SmoI	CTYRAG	3 cut(s)	112, 880, 1991
SsiI	CCGC	5 cut(s)	395, 454, 793, 1459, 1562
SspMI	CTAG	6 cut(s)	216, 441, 552, 1287, 1748, 1971
SstI	GAGCTC	1 cut(s)	1368
StyD4I	CCNGG	4 cut(s)	81, 151, 1477, 1853
StyI	CCWWGG	3 cut(s)	610, 1017, 1684
TaaI	ACNGT	4 cut(s)	632, 951, 1392, 2059
TaqI	TCGA	3 cut(s)	60, 619, 765
TatI	WGTACW	2 cut(s)	1434, 1724
TfiI	GAWTC	3 cut(s)	106, 367, 1058
TscAI	CASTG	1 cut(s)	1281
TseFI	GTSAC	5 cut(s)	605, 1168, 1742, 1769, 2005
TseI	GCWGC	7 cut(s)	50, 413, 509, 647, 790, 1086, 1922
Tsp45I	GTSAC	5 cut(s)	605, 1168, 1742, 1769, 2005
TspDTI	ATGAA	9 cut(s)	346, 561, 797, 954, 1416, 1572, 1745, 1880, 2057
TspGWI	ACGGA	2 cut(s)	1543, 2024
TspRI	CASTG	1 cut(s)	1281
Tth111I	GACNNNGTC	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	880
VpaK11BI	GGWCC	2 cut(s)	628, 1340
XapI	RAATTY	2 cut(s)	290, 621
XbaI	TCTAGA	1 cut(s)	1286
XceI	RCATGY	1 cut(s)	1429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1983
XmiI	GTMKAC	1 cut(s)	2061
XspI	CTAG	6 cut(s)	216, 441, 552, 1287, 1748, 1971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.