Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Reverse (-)

1221411 .. 1224539

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCGCAGGACGTAATTTCGTCTCATGAGCAGCTCTCCATGGATGAGATCACAAGTCCTCTCACCGCACAGATCTTCGATTTCTGCGATTCACAGTTATTTCAAGAAACCTTCAATCAAACTTCTGAAGTAACCTCTGCTTCAAACGGTTGTGGCTATGTCGAAAACAACAACACCAACAACTTTCCAGACAAATCCAACAGTGGTTCGAATCAAGATCATGAAGACAACAACGACAACGCTGATTTATCAATCATATTCGATTCACAAGATGATTTCGATAACGATATCACAGCTTCTATCGATTTCTCTTCATCCATCCAGTTCCCAGCCTCCGATCAACTCCAAGAGCAGTTTGATTTCACCGGAATTCAACTTCACCAGCCTCCGAACACTCTCTACTCTTCCTCCTCTGGTGACCTTCTGCCTCCGCCTTTATCGGTTTTCGAAGAAGATTGTCTTTCTTCTGTGCCAAGTTACAATCTTGGTTCCATAAACCCTTCTTCTCCTTCTTGCTCTTTTTTGGGTAATACCGGTTTACCGACTTACATGACCGTAACCGGGAATATGATGAACACCGGTTTAGGATCTGGTTTTTACTCCGGGAATATCCATCTCGGTTCTGATTTCAAACCATCACATGATCAATTGATGGAAATTCAAGCTGATAATGGTGGATTGTTCTGTCCAGATCCGATTAAACCCATCTTTAATCCAGGAGATCATCATCTCCAGGGACTTGACGGTGTCGAGAACCAGAACCACATGGTGGCACAGCCGGTTCTCCCGCAGTTAGGGACGGAGATAACCGGTTTAGACGACCCGAGTTTCAACAAAGTCGGAAAACTCTCGGCAGAGCAGAGAAAAGAGAAGATTCATAGGTATATGAAGAAGAGGAACGAGAGGAATTTCAGCAAGAAAATCAAGTATGCATGTAGGAAGACGTTGGCAGATAGTCGTCCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAACCAAATAGACAAGCCTGTTCAAGCCATCATGAAGATGATGATGATGATGTGGGGGTAAAGGAAGAAGAACAGTTAGTTGATTCTTCGGACATATTTTCACACATAAGTGGTGTGAACTCTTTCAAATGCAATTATCCAATCCAGTCTTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

386

Amino Acids

42.77

Weight (kDa)

4.5

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	769
AciI	CCGC	3 cut(s)	66, 431, 788
AclWI	GGATC	2 cut(s)	595, 686
AcsI	RAATTY	4 cut(s)	369, 657, 907, 995
AcuI	CTGAAG	1 cut(s)	147
AdeI	CACNNNGTG	1 cut(s)	769
AfiI	CCNNNNNNNGG	3 cut(s)	561, 769, 794
AgeI	ACCGGT	3 cut(s)	533, 578, 809
AgsI	TTSAA	9 cut(s)	104, 115, 144, 374, 631, 662, 832, 1026, 1129
AjnI	CCWGG	2 cut(s)	715, 732
AleI	CACNNNNGTG	1 cut(s)	1110
AluBI	AGCT	3 cut(s)	34, 296, 665
AluI	AGCT	3 cut(s)	34, 296, 665
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	595, 686
Ama87I	CYCGRG	1 cut(s)	823
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	4 cut(s)	369, 657, 907, 995
AsiGI	ACCGGT	3 cut(s)	533, 578, 809
Asp700I	GAANNNNTTC	1 cut(s)	1124
AsuC2I	CCSGG	2 cut(s)	562, 604
AsuHPI	GGTGA	5 cut(s)	55, 355, 371, 428, 1013
AsuII	TTCGAA	2 cut(s)	209, 447
AvaI	CYCGRG	1 cut(s)	823
BbsI	GAAGAC	2 cut(s)	231, 947
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	6 cut(s)	326, 621, 643, 646, 713, 1038
BciT130I	CCWGG	2 cut(s)	717, 734
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	562, 604
BcoDI	GTCTC	1 cut(s)	27
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	4 cut(s)	562, 604, 717, 734
BmeT110I	CYCGRG	1 cut(s)	823
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	4 cut(s)	562, 604, 717, 734
BpiI	GAAGAC	2 cut(s)	231, 947
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	716
Bpu14I	TTCGAA	2 cut(s)	209, 447
BpuMI	CCSGG	2 cut(s)	562, 604
Bsa29I	ATCGAT	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	39, 733
BsaWI	WCCGGW	4 cut(s)	365, 533, 578, 809
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	561, 769, 794
Bse118I	RCCGGY	4 cut(s)	533, 578, 778, 809
Bse1I	ACTGG	2 cut(s)	322, 1147
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	717, 734
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	39, 733
BseGI	GGATG	3 cut(s)	49, 314, 318
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	3 cut(s)	561, 769, 794
BseNI	ACTGG	2 cut(s)	322, 1147
BseRI	GAGGAG	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	328
BshTI	ACCGGT	3 cut(s)	533, 578, 809
BshVI	ATCGAT	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	823
BsiSI	CCGG	7 cut(s)	366, 534, 561, 579, 603, 779, 810
BslFI	GGGAC	2 cut(s)	750, 811
BslI	CCNNNNNNNGG	3 cut(s)	561, 769, 794
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	750, 811
BsoBI	CYCGRG	1 cut(s)	823
Bsp119I	TTCGAA	2 cut(s)	209, 447
Bsp143I	GATC	8 cut(s)	48, 72, 217, 337, 587, 643, 691, 721
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	3 cut(s)	66, 431, 788
BspDI	ATCGAT	1 cut(s)	303
BspHI	TCATGA	3 cut(s)	25, 220, 1033
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	2 cut(s)	595, 686
BspT104I	TTCGAA	2 cut(s)	209, 447
BsrFI	RCCGGY	4 cut(s)	533, 578, 778, 809
BsrI	ACTGG	2 cut(s)	322, 1147
BssAI	RCCGGY	4 cut(s)	533, 578, 778, 809
BssECI	CCNNGG	2 cut(s)	39, 733
BssMI	GATC	8 cut(s)	48, 72, 217, 337, 587, 643, 691, 721
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	717, 734
Bst4CI	ACNGT	6 cut(s)	96, 149, 203, 556, 746, 1077
Bst6I	CTCTTC	3 cut(s)	316, 409, 887
BstBI	TTCGAA	2 cut(s)	209, 447
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	3 cut(s)	49, 314, 318
BstKTI	GATC	8 cut(s)	51, 75, 220, 340, 590, 646, 694, 724
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	8 cut(s)	48, 72, 217, 337, 587, 643, 691, 721
BstNI	CCWGG	2 cut(s)	717, 734
BstNSI	RCATGY	1 cut(s)	936
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	4 cut(s)	560, 602, 715, 732
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	231, 947
BstX2I	RGATCY	3 cut(s)	72, 587, 691
BstYI	RGATCY	3 cut(s)	72, 587, 691
Bsu15I	ATCGAT	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	49, 314, 318
BtsIMutI	CAGTG	1 cut(s)	208
CciI	TCATGA	3 cut(s)	25, 220, 1033
Cfr10I	RCCGGY	4 cut(s)	533, 578, 778, 809
ClaI	ATCGAT	1 cut(s)	303
CspAI	ACCGGT	3 cut(s)	533, 578, 809
CviAII	CATG	8 cut(s)	26, 40, 221, 550, 641, 766, 933, 1034
CviJI	RGCY	9 cut(s)	34, 156, 296, 332, 385, 665, 778, 1019, 1029
CviKI_1	RGCY	9 cut(s)	34, 156, 296, 332, 385, 665, 778, 1019, 1029
DpnI	GATC	8 cut(s)	50, 74, 219, 339, 589, 645, 693, 723
DpnII	GATC	8 cut(s)	48, 72, 217, 337, 587, 643, 691, 721
DraIII	CACNNNGTG	1 cut(s)	769
Eam1104I	CTCTTC	3 cut(s)	316, 409, 887
EarI	CTCTTC	3 cut(s)	316, 409, 887
EciI	GGCGGA	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	823
Eco91I	GGTNACC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	715, 732
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	8 cut(s)	29, 43, 224, 553, 644, 769, 936, 1037
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	2 cut(s)	750, 811
FatI	CATG	8 cut(s)	25, 39, 220, 549, 640, 765, 932, 1033
FauI	CCCGC	1 cut(s)	795
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	3 cut(s)	56, 301, 305
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsaI	CCCAGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	716
HapII	CCGG	7 cut(s)	366, 534, 561, 579, 603, 779, 810
Hin1II	CATG	8 cut(s)	29, 43, 224, 553, 644, 769, 936, 1037
HinfI	GANTC	5 cut(s)	89, 211, 263, 874, 1085
HpaII	CCGG	7 cut(s)	366, 534, 561, 579, 603, 779, 810
HphI	GGTGA	5 cut(s)	55, 355, 371, 428, 1013
Hpy166II	GTNNAC	3 cut(s)	539, 1004, 1120
Hpy188I	TCNGA	7 cut(s)	127, 337, 390, 625, 696, 842, 1093
Hpy188III	TCNNGA	8 cut(s)	26, 104, 188, 215, 221, 689, 751, 1034
Hpy8I	GTNNAC	3 cut(s)	539, 1004, 1120
HpyAV	CCTTC	4 cut(s)	121, 431, 510, 519
HpyCH4III	ACNGT	6 cut(s)	96, 149, 203, 556, 746, 1077
HpyCH4IV	ACGT	2 cut(s)	12, 944
HpyCH4V	TGCA	3 cut(s)	932, 983, 1134
HpySE526I	ACGT	2 cut(s)	12, 944
Hsp92II	CATG	8 cut(s)	29, 43, 224, 553, 644, 769, 936, 1037
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	8 cut(s)	48, 72, 217, 337, 587, 643, 691, 721
Lsp1109I	GCAGC	1 cut(s)	43
MaeII	ACGT	2 cut(s)	12, 944
MaeIII	GTNAC	4 cut(s)	130, 416, 476, 556
MalI	GATC	8 cut(s)	50, 74, 219, 339, 589, 645, 693, 723
MboI	GATC	8 cut(s)	48, 72, 217, 337, 587, 643, 691, 721
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	3 cut(s)	72, 587, 691
MluCI	AATT	7 cut(s)	15, 369, 647, 657, 907, 995, 1135
MmeI	TCCRAC	2 cut(s)	222, 820
Mph1103I	ATGCAT	1 cut(s)	934
MroXI	GAANNNNTTC	1 cut(s)	1124
MseI	TTAA	2 cut(s)	699, 711
MslI	CAYNNNNRTG	2 cut(s)	1038, 1110
MspI	CCGG	7 cut(s)	366, 534, 561, 579, 603, 779, 810
MspR9I	CCNGG	4 cut(s)	562, 604, 717, 734
MunI	CAATTG	1 cut(s)	647
MvaI	CCWGG	2 cut(s)	717, 734
NciI	CCSGG	2 cut(s)	562, 604
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	8 cut(s)	48, 72, 217, 337, 587, 643, 691, 721
NlaIII	CATG	8 cut(s)	29, 43, 224, 553, 644, 769, 936, 1037
NlaIV	GGNNCC	1 cut(s)	490
NmeAIII	GCCGAG	1 cut(s)	830
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	1 cut(s)	936
NspV	TTCGAA	2 cut(s)	209, 447
OliI	CACNNNNGTG	1 cut(s)	1110
PagI	TCATGA	3 cut(s)	25, 220, 1033
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	1124
PfeI	GAWTC	5 cut(s)	89, 211, 263, 874, 1085
PflFI	GACNNNGTC	1 cut(s)	746
PflMI	CCANNNNNTGG	1 cut(s)	769
PfoI	TCCNGGA	2 cut(s)	602, 715
PinAI	ACCGGT	3 cut(s)	533, 578, 809
PkrI	GCNGC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	715, 732
PspEI	GGTNACC	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	328
PspGI	CCWGG	2 cut(s)	715, 732
PspN4I	GGNNCC	1 cut(s)	490
PsrI	GAACNNNNNNTAC	2 cut(s)	383, 415
PsuI	RGATCY	3 cut(s)	72, 587, 691
PsyI	GACNNNGTC	1 cut(s)	746
RseI	CAYNNNNRTG	2 cut(s)	1038, 1110
SaqAI	TTAA	2 cut(s)	699, 711
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	8 cut(s)	48, 72, 217, 337, 587, 643, 691, 721
ScrFI	CCNGG	4 cut(s)	562, 604, 717, 734
SetI	ASST	9 cut(s)	15, 36, 113, 137, 298, 423, 667, 884, 947
SfuI	TTCGAA	2 cut(s)	209, 447
SmiMI	CAYNNNNRTG	2 cut(s)	1038, 1110
Sse9I	AATT	7 cut(s)	15, 369, 647, 657, 907, 995, 1135
SsiI	CCGC	3 cut(s)	66, 431, 788
StyD4I	CCNGG	4 cut(s)	560, 602, 715, 732
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	6 cut(s)	96, 149, 203, 556, 746, 1077
TaiI	ACGT	2 cut(s)	15, 947
TaqI	TCGA	8 cut(s)	78, 162, 209, 261, 279, 303, 447, 750
TasI	AATT	7 cut(s)	15, 369, 647, 657, 907, 995, 1135
TfiI	GAWTC	5 cut(s)	89, 211, 263, 874, 1085
Tru1I	TTAA	2 cut(s)	699, 711
Tru9I	TTAA	2 cut(s)	699, 711
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	7 cut(s)	237, 303, 587, 866, 902, 1008, 1050
TspGWI	ACGGA	1 cut(s)	815
TspRI	CASTG	1 cut(s)	208
Tth111I	GACNNNGTC	1 cut(s)	746
Van91I	CCANNNNNTGG	1 cut(s)	769
XapI	RAATTY	4 cut(s)	369, 657, 907, 995
XceI	RCATGY	1 cut(s)	936
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1149
XmnI	GAANNNNTTC	1 cut(s)	1124
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.