Rh4AG057900

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005795
Physical Location & Seq
Reverse (-)
12176038 .. 12180348
4311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG057900.1

Sequence Viewer

Length: 1299 bp
ATGAAGAATGATGCTTCTACTTGGCTTAAGAAAAAGGATGAAATTTCAAGCCAGATTAGTGCTCAAATTTTCGAATTCTGTGATCCTGAACTATTCCATGAGACCCTGCAGAATTCTGAGGTCACTTCTTCTTCAAATTGCTGCTATGATGAAAACTCCTCTTATGCAACAAATATTTCGCTGCCCCTGGATTTAGAAACTAAATTCAGTACCTACCAGGATAACAATGGCAACACTGACACAACCATTGCTCCAACCCCCACAACAACTAGTACCACCACCACTAGCAGCACAAACACCACCACTGCCAGCACCAACACCACCAATATCAACGCCACTACCGCCACCACCAACAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATCGACAATGACATCTCAGCCTCCATCGATTTTTCCCCATCCCCTCCCTTTTCCGTACCTCCATTTCTCATGACCCAACAAGACCAATTTGATTTCACTTCAGTGCCAACTCAAATCCCACTAGCAGATTCTGTTGTTGAGGGATTTTCACAGTATCCTGCTGACCCTGTACCGCCTCTCATGTCGGCTCCTTTGTCATCAGTTTTCGAAGAGGATTGCTTGTCCTCAGTGCCTTCGTATGTGCCTTTGAACCCCTCTTCTCCTTCTTGTTCTTTTCTTGGTCCTACCATGGGAGCATACATGCCTGCTGGGACTATGAATGCTGCAGCATTATCTGCTGACAGCACTGGAATTTTCACCAGCAGTATCCTCATGGCTTCTGAACTGCAACCACAAGATTTGGAATACCAAGGAGATAACGGTGGAATTTTCTGTCCAGAATCATTACAGAGGGGTTTTAACCCTGAAGACCTTCAGATGCTTGGTGCTGAGAGCCAACAACTGGTGAGTGGGGCTGGGAACTCTACTTCTTTACCAACTGAGATTCCCATGGCAGAAGACCCAAATTTTAAAGTAGGGAAGCTATCTGTTGAGGAAAGGAAAGAGAAGATACATAGGTACATGAAGAAAAGGAATGAAAGGAATTTCACAAAGAAAATCAAGTATGCCTGCCGCAAAACTCTTGCGGACAGCAGACCTCGAGTTAGAGGAAGATTTGCGAAGAATGATGATTTTGGAGAGAATCATAGACCTTCTGGTAGCAACCATGAAGACGATGAAGACGATGAAGTAGTTGTGAAAGAGGAAGAGGATATGGTTGATTCCTCGGACATCTTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAGCTATCCTATCCAATCCTGGATTTGA

Protein Analysis

432

Amino Acids

47.29

Weight (kDa)

4.35

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 334 - 376 9.8e-19 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 904
AciI CCGC 4 cut(s) 342, 575, 1075, 1088
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 9 cut(s) 42, 66, 74, 112, 203, 753, 828, 967, 1045
AcuI CTGAAG 3 cut(s) 486, 860, 888
AfaI GTAC 5 cut(s) 211, 274, 459, 573, 1022
AfiI CCNNNNNNNGG 2 cut(s) 692, 904
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 4 cut(s) 48, 135, 652, 1267
AhlI ACTAGT 1 cut(s) 269
AjnI CCWGG 3 cut(s) 186, 216, 1289
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 2 cut(s) 985, 1275
AluI AGCT 2 cut(s) 985, 1275
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 1101
ApeKI GCWGC 6 cut(s) 141, 181, 288, 725, 728, 1272
ApoI RAATTY 9 cut(s) 42, 66, 74, 112, 203, 753, 828, 967, 1045
Asp700I GAANNNNTTC 2 cut(s) 873, 1262
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 751, 919
AsuII TTCGAA 2 cut(s) 72, 609
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 1 cut(s) 683
BaeI ACNNNNGTAYC 2 cut(s) 1004, 1037
BbsI GAAGAC 4 cut(s) 876, 966, 1179, 1188
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 6 cut(s) 128, 168, 300, 712, 740, 1284
BccI CCATC 2 cut(s) 434, 448
BciT130I CCWGG 3 cut(s) 188, 218, 1291
BciVI GTATCC 2 cut(s) 567, 779
BcoDI GTCTC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 3 cut(s) 270, 285, 524
BfmI CTRYAG 2 cut(s) 107, 726
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 2 cut(s) 567, 779
BisI GCNGC 7 cut(s) 142, 182, 289, 726, 729, 1075, 1273
BlsI GCNGC 7 cut(s) 143, 183, 290, 727, 730, 1076, 1274
Bme1390I CCNGG 3 cut(s) 188, 218, 1291
Bme18I GGWCC 1 cut(s) 683
BmeT110I CYCGRG 1 cut(s) 1101
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 3 cut(s) 188, 218, 1291
BmsI GCATC 1 cut(s) 870
BpiI GAAGAC 4 cut(s) 876, 966, 1179, 1188
Bpu14I TTCGAA 2 cut(s) 72, 609
Bsa29I ATCGAT 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 5 cut(s) 186, 690, 811, 951, 1227
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 692, 904
Bse1I ACTGG 2 cut(s) 754, 909
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 3 cut(s) 188, 218, 1291
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 5 cut(s) 186, 690, 811, 951, 1227
BseGI GGATG 2 cut(s) 43, 440
BseLI CCNNNNNNNGG 2 cut(s) 692, 904
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 5 cut(s) 108, 432, 642, 882, 933
BseNI ACTGG 2 cut(s) 754, 909
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 6 cut(s) 128, 168, 300, 712, 740, 1284
BseYI CCCAGC 2 cut(s) 710, 917
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 1101
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 2 cut(s) 692, 904
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 727
BsmI GAATGC 1 cut(s) 727
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 1101
Bsp119I TTCGAA 2 cut(s) 72, 609
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 82
Bsp19I CCATGG 2 cut(s) 690, 951
BspACI CCGC 4 cut(s) 342, 575, 1075, 1088
BspCNI CTCAG 5 cut(s) 109, 431, 641, 883, 934
BspDI ATCGAT 1 cut(s) 429
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 591
BspMAI CTGCAG 2 cut(s) 111, 730
BspPI GGATC 1 cut(s) 77
BspT104I TTCGAA 2 cut(s) 72, 609
BspTI CTTAAG 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 2 cut(s) 754, 909
BssECI CCNNGG 5 cut(s) 186, 690, 811, 951, 1227
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 3 cut(s) 690, 811, 951
Bst2UI CCWGG 3 cut(s) 188, 218, 1291
Bst4CI ACNGT 2 cut(s) 555, 824
Bst6I CTCTTC 3 cut(s) 606, 664, 1203
BstAFI CTTAAG 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 737
BstBI TTCGAA 2 cut(s) 72, 609
BstC8I GCNNGC 3 cut(s) 310, 708, 1072
BstDEI CTNAG 5 cut(s) 117, 418, 628, 891, 942
BstDSI CCRYGG 2 cut(s) 690, 951
BstF5I GGATG 2 cut(s) 43, 440
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 341, 737
BstNI CCWGG 3 cut(s) 188, 218, 1291
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 3 cut(s) 186, 216, 1289
BstSFI CTRYAG 2 cut(s) 107, 726
BstV1I GCAGC 6 cut(s) 128, 168, 300, 712, 740, 1284
BstV2I GAAGAC 4 cut(s) 876, 966, 1179, 1188
Bsu15I ATCGAT 1 cut(s) 429
BsuI GTATCC 2 cut(s) 567, 779
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 2 cut(s) 690, 951
BtsCI GGATG 2 cut(s) 43, 440
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 6 cut(s) 234, 303, 510, 636, 747, 1255
Cac8I GCNNGC 3 cut(s) 310, 708, 1072
CaiI CAGNNNCTG 1 cut(s) 533
CciI TCATGA 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 683
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 5 cut(s) 210, 273, 458, 572, 1021
CspCI CAANNNNNGTGG 4 cut(s) 346, 381, 783, 818
CviAII CATG 9 cut(s) 98, 472, 583, 691, 703, 775, 952, 1024, 1169
CviJI RGCY 9 cut(s) 25, 51, 422, 590, 779, 897, 917, 985, 1275
CviKI_1 RGCY 9 cut(s) 25, 51, 422, 590, 779, 897, 917, 985, 1275
CviQI GTAC 5 cut(s) 210, 273, 458, 572, 1021
DdeI CTNAG 5 cut(s) 117, 418, 628, 891, 942
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraI TTTAAA 1 cut(s) 973
Eam1104I CTCTTC 3 cut(s) 606, 664, 1203
EarI CTCTTC 3 cut(s) 606, 664, 1203
Eco130I CCWWGG 3 cut(s) 690, 811, 951
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 3 cut(s) 486, 860, 888
Eco88I CYCGRG 1 cut(s) 1101
EcoRI GAATTC 2 cut(s) 74, 112
EcoRII CCWGG 3 cut(s) 186, 216, 1289
EcoT14I CCWWGG 3 cut(s) 690, 811, 951
ErhI CCWWGG 3 cut(s) 690, 811, 951
FaeI CATG 9 cut(s) 101, 475, 586, 694, 706, 778, 955, 1027, 1172
FaqI GGGAC 1 cut(s) 727
FatI CATG 9 cut(s) 97, 471, 582, 690, 702, 774, 951, 1023, 1168
Fnu4HI GCNGC 7 cut(s) 142, 182, 289, 726, 729, 1075, 1273
FokI GGATG 2 cut(s) 50, 427
Fsp4HI GCNGC 7 cut(s) 142, 182, 289, 726, 729, 1075, 1273
FspBI CTAG 3 cut(s) 270, 285, 524
GluI GCNGC 7 cut(s) 142, 182, 289, 726, 729, 1075, 1273
GsaI CCCAGC 2 cut(s) 714, 921
Hin1II CATG 9 cut(s) 101, 475, 586, 694, 706, 778, 955, 1027, 1172
HinfI GANTC 6 cut(s) 389, 530, 842, 946, 1144, 1223
HphI GGTGA 2 cut(s) 751, 919
Hpy166II GTNNAC 1 cut(s) 1258
Hpy188I TCNGA 4 cut(s) 118, 784, 879, 1231
Hpy188III TCNNGA 3 cut(s) 86, 472, 839
Hpy8I GTNNAC 1 cut(s) 1258
HpyAV CCTTC 5 cut(s) 645, 675, 884, 1164, 1273
HpyCH4III ACNGT 2 cut(s) 555, 824
HpyCH4V TGCA 5 cut(s) 109, 167, 728, 790, 1272
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 737
HpyF3I CTNAG 5 cut(s) 117, 418, 628, 891, 942
Hsp92II CATG 9 cut(s) 101, 475, 586, 694, 706, 778, 955, 1027, 1172
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 256, 595, 695
Lsp1109I GCAGC 6 cut(s) 128, 168, 300, 712, 740, 1284
LweI GCATC 1 cut(s) 870
MaeI CTAG 3 cut(s) 270, 285, 524
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 278
MroXI GAANNNNTTC 2 cut(s) 873, 1262
MseI TTAA 3 cut(s) 27, 861, 972
MslI CAYNNNNRTG 2 cut(s) 503, 1248
MspCI CTTAAG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 188, 218, 1291
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 3 cut(s) 188, 218, 1291
MwoI GCNNNNNNNGC 2 cut(s) 341, 737
NcoI CCATGG 2 cut(s) 690, 951
NdeII GATC 1 cut(s) 82
NlaIII CATG 9 cut(s) 101, 475, 586, 694, 706, 778, 955, 1027, 1172
NlaIV GGNNCC 1 cut(s) 591
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 2 cut(s) 72, 609
OliI CACNNNNGTG 1 cut(s) 503
PaeR7I CTCGAG 1 cut(s) 1101
PagI TCATGA 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 1182
PctI GAATGC 1 cut(s) 727
PdmI GAANNNNTTC 2 cut(s) 873, 1262
PfeI GAWTC 6 cut(s) 389, 530, 842, 946, 1144, 1223
PflMI CCANNNNNTGG 1 cut(s) 904
PfoI TCCNGGA 1 cut(s) 1289
PkrI GCNGC 7 cut(s) 143, 183, 290, 727, 730, 1076, 1274
Psp6I CCWGG 3 cut(s) 186, 216, 1289
PspFI CCCAGC 2 cut(s) 710, 917
PspGI CCWGG 3 cut(s) 186, 216, 1289
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 1 cut(s) 683
PspXI VCTCGAGB 1 cut(s) 1101
PstI CTGCAG 2 cut(s) 111, 730
PstNI CAGNNNCTG 1 cut(s) 533
RsaI GTAC 5 cut(s) 211, 274, 459, 573, 1022
RsaNI GTAC 5 cut(s) 210, 273, 458, 572, 1021
RseI CAYNNNNRTG 2 cut(s) 503, 1248
SaqAI TTAA 3 cut(s) 27, 861, 972
SatI GCNGC 7 cut(s) 142, 182, 289, 726, 729, 1075, 1273
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 683
ScrFI CCNGG 3 cut(s) 188, 218, 1291
SduI GDGCHC 1 cut(s) 64
SetI ASST 9 cut(s) 123, 215, 463, 876, 987, 1022, 1102, 1156, 1277
SfaNI GCATC 1 cut(s) 870
SfcI CTRYAG 2 cut(s) 107, 726
Sfr274I CTCGAG 1 cut(s) 1101
SfuI TTCGAA 2 cut(s) 72, 609
SinI GGWCC 1 cut(s) 683
SlaI CTCGAG 1 cut(s) 1101
SmiMI CAYNNNNRTG 2 cut(s) 503, 1248
SmlI CTYRAG 2 cut(s) 26, 1101
SmoI CTYRAG 2 cut(s) 26, 1101
SpeI ACTAGT 1 cut(s) 269
SsiI CCGC 4 cut(s) 342, 575, 1075, 1088
SspI AATATT 1 cut(s) 175
SspMI CTAG 3 cut(s) 270, 285, 524
StyD4I CCNGG 3 cut(s) 186, 216, 1289
StyI CCWWGG 3 cut(s) 690, 811, 951
TaaI ACNGT 2 cut(s) 555, 824
TaqI TCGA 5 cut(s) 72, 405, 429, 609, 1102
TauI GCSGC 1 cut(s) 1077
TfiI GAWTC 6 cut(s) 389, 530, 842, 946, 1144, 1223
Tru1I TTAA 3 cut(s) 27, 861, 972
Tru9I TTAA 3 cut(s) 27, 861, 972
TscAI CASTG 6 cut(s) 241, 310, 510, 636, 754, 1255
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 6 cut(s) 141, 181, 288, 725, 728, 1272
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 9 cut(s) 17, 54, 165, 734, 1040, 1053, 1185, 1194, 1203
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 6 cut(s) 241, 310, 510, 636, 754, 1255
Van91I CCANNNNNTGG 1 cut(s) 904
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 9 cut(s) 42, 66, 74, 112, 203, 753, 828, 967, 1045
XceI RCATGY 1 cut(s) 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 1101
XmnI GAANNNNTTC 2 cut(s) 873, 1262
XspI CTAG 3 cut(s) 270, 285, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.