Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Reverse (-)

44722271 .. 44732434

Gene Structure 10164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0358500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCCCATTGCTGCAATTTTTTTCTTTTTCTCATCTGCTAAATCCGGGGTAGGGCTATGTCGTACGTCGAGCTCTGACTTCCGACGAACCGCATCACAAATTTGGAGGTTCTGGGCGATTGGTTGGGCTGATTGGGAAAAGGTGAAGTTTTCTAAGGTTGAATTGCTCCCAAAAGGCTTGGAAATCCGGTTTCAATTACTCGCAATAAGCTTGGAAATCTGGTTTCTTTCACAGAAGGATCATGGTCTGAAAGTTGCACAGTTGTTAAATAGTTCAGACTCGAAAGTTGCATATACTCAAGAACTTGGGAAAACCAGTTTTTTAAACTTCTTGACGCAGAAGTTTGACAGTTTAAGGATTCTGCTCCAAGCCTTGCCTTTCTGTCAAAAGCTGAAATCAATTGGGAAGCACGAACAAACAAGTGGTGACTCTGTATCCTCTACATCAAAGGGGAAGAAGGTAGATAAGATAACTCGGAGAAAAGGAAGAGGGGACGGAAAGCTGTCGTGGTTTCGTTTTGATTGCGCACAACAATCGGAAAAGGTTGGCCTAGATGTAATAGGATTAGGAAACCTTTATGGGAGGCACCTAATCCTTAAAGCCTATATATGGACCTTGATCCCTGCTCTAGCAATTACACAAGCATTCAAGTTCTCTGCCCCATTACTGAGATTGCATTCATCAAATTGCTCAGAGGAGAAGATCAAACATGTCCTATCCAGAACTTGCTATCTTCACATTTTGAACAAGGCAGATATTTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

255

Amino Acids

28.86

Weight (kDa)

9.88

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	585
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	2 cut(s)	246, 613
AcsI	RAATTY	1 cut(s)	99
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	51, 609
AflIII	ACRYGT	1 cut(s)	709
AgsI	TTSAA	5 cut(s)	161, 194, 649, 745, 763
AluBI	AGCT	4 cut(s)	72, 210, 391, 502
AluI	AGCT	4 cut(s)	72, 210, 391, 502
Alw21I	GWGCWC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	246, 613
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	612
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	154, 437
AvaII	GGWCC	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BciVI	GTATCC	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	46
BfaI	CTAG	2 cut(s)	551, 629
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 609
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	51, 609
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	659, 705
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	710
BshFI	GGCC	1 cut(s)	549
BshNI	GGYRCC	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	45, 187
BsiWI	CGTACG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	51, 609
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	2 cut(s)	644, 676
BsnI	GGCC	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	238, 618, 702
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	2 cut(s)	660, 704
BspLI	GGNNCC	1 cut(s)	587
BspPI	GGATC	2 cut(s)	246, 613
BspT107I	GGYRCC	1 cut(s)	585
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	238, 618, 702
Bst4CI	ACNGT	2 cut(s)	261, 350
Bst6I	CTCTTC	1 cut(s)	481
BstDEI	CTNAG	3 cut(s)	153, 668, 691
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	3 cut(s)	241, 621, 705
BstMBI	GATC	3 cut(s)	238, 618, 702
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	549
CfoI	GCGC	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	612
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	2 cut(s)	242, 710
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	3 cut(s)	153, 668, 691
DpnI	GATC	3 cut(s)	240, 620, 704
DpnII	GATC	3 cut(s)	238, 618, 702
DraI	TTTAAA	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	612
Eco53kI	GAGCTC	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	2 cut(s)	245, 713
FaiI	YATR	9 cut(s)	58, 243, 292, 294, 579, 606, 608, 610, 711
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	2 cut(s)	241, 709
Fnu4HI	GCNGC	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	551, 629
FspI	TGCGCA	1 cut(s)	526
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	2 cut(s)	45, 187
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	527
Hin1II	CATG	2 cut(s)	245, 713
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	3 cut(s)	278, 358, 428
HpaII	CCGG	2 cut(s)	45, 187
HphI	GGTGA	2 cut(s)	154, 437
Hpy188I	TCNGA	7 cut(s)	76, 83, 249, 277, 477, 538, 694
Hpy188III	TCNNGA	3 cut(s)	299, 331, 720
Hpy99I	CGWCG	2 cut(s)	70, 87
HpyAV	CCTTC	2 cut(s)	229, 451
HpyCH4III	ACNGT	2 cut(s)	261, 350
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	14, 257, 290, 676
HpyF3I	CTNAG	3 cut(s)	153, 668, 691
HpySE526I	ACGT	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	245, 713
HspAI	GCGC	1 cut(s)	525
Kzo9I	GATC	3 cut(s)	238, 618, 702
LmnI	GCTCC	2 cut(s)	171, 369
LpnPI	CCDG	7 cut(s)	58, 97, 200, 205, 328, 636, 733
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	551, 629
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	3 cut(s)	240, 620, 704
MboI	GATC	3 cut(s)	238, 618, 702
MboII	GAAGA	4 cut(s)	466, 498, 712, 725
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	8 cut(s)	15, 99, 161, 194, 399, 633, 685, 763
MlyI	GAGTC	2 cut(s)	272, 422
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	99, 448, 482, 576, 688
MseI	TTAA	4 cut(s)	266, 323, 353, 597
MspI	CCGG	2 cut(s)	45, 187
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	644, 676
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	3 cut(s)	238, 618, 702
NlaIII	CATG	2 cut(s)	245, 713
NlaIV	GGNNCC	1 cut(s)	587
NmuCI	GTSAC	1 cut(s)	425
NsbI	TGCGCA	1 cut(s)	526
NspI	RCATGY	1 cut(s)	713
PciI	ACATGT	1 cut(s)	709
PctI	GAATGC	2 cut(s)	644, 676
PfeI	GAWTC	1 cut(s)	358
Pfl23II	CGTACG	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	272, 422
PpsI	GAGTC	2 cut(s)	272, 422
PscI	ACATGT	1 cut(s)	709
Psp124BI	GAGCTC	1 cut(s)	74
PspLI	CGTACG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	587
PspPI	GGNCC	1 cut(s)	612
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	4 cut(s)	266, 323, 353, 597
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	238, 618, 702
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	2 cut(s)	272, 422
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	1 cut(s)	101
SinI	GGWCC	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	8 cut(s)	15, 99, 161, 194, 399, 633, 685, 763
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	551, 629
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	261, 350
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	68, 281
TasI	AATT	8 cut(s)	15, 99, 161, 194, 399, 633, 685, 763
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	4 cut(s)	266, 323, 353, 597
Tru9I	TTAA	4 cut(s)	266, 323, 353, 597
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	669
TspGWI	ACGGA	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	612
XapI	RAATTY	1 cut(s)	99
XceI	RCATGY	1 cut(s)	713
XspI	CTAG	2 cut(s)	551, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.