Rh4DG053500

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005795
Physical Location & Seq
Reverse (-)
8408368 .. 8412314
3947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG053500.1

Sequence Viewer

Length: 1308 bp
ATGTTGCAGCAGGTGATTCAGCAGCAGCAAGAACAGGATGAAATTTCAAGCCAGATTAGTGCTCAAATTTTCGATTTCTGTGATCCTGAACTATTCCAAGAGACCCTGCAGAATTCTGAGGTCACTTCTTCTTCAAATTGCTGCTATGATGAAAACTCCTCTTATGCAACAAATCTTTCGCTGCCCCAGGATTTAGAAACTAAATTCAGTACCTACCAGGATAACAATGGCAACACTGACACAACCATTGCTCCAACCCCCACAACAACTAGTACCACCACCACCACCACCACTAGCAGCACAAACACCACCACCGCCAGCACCAACACCACCAATATCAACGCCACTACTGCCACCACCAACAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATCGACAATGACATCTCAGCCTCCATCGATTTTTCCCCATCCCCTCCCTTTTCCGTACCTCCATTTCTCATGACCCAACAAGACCAATTTGATTTCACTTCAGTGCCAACTCAAATCTCACTAGCAGATTCTGTTGTTGAGGGATTTTCACAGTATCCTGCTGACCCTGTACCGCCTCTCATGTCGGCTCCTTTGTCATCAGTTTTCGAAGAGGATTGCTTGTCCTCAGTGCCTTCGTATGTGCCTTTGAACCCCTCTTCTCCTTCTTGTTCTTTTCTTGGTCCTACCATGGGAGCATACATGCCTGCTGGGACTATGAATGCTGCAGCATTATCTGCTGACAGTACTGGAATTTACACCAGCAGTATTCTCATGGCTTCTGAACTGCAACCACAAGATTTGGAATACCAAGGAGATAATGGCGGAATTTTCTGTCCAGAATCATTACCGAGGGGTTTTAACCCTGAAGACCTTCAGATGCTTGGTGCTGAGAGCCAACCACTGGTGAGTGGGGCTGGGAACTCTACTTCTTTACCAACTGAGATTCCCATGGCAGAAGACCCAAATTTTAAAGTAGGGAAGCTATCTGTTGAGGAAAGGAAAGAGAAGATACATAGGTACATGAAGAAAAGGAATGAAAGGAATTTCACAAAGAAAATCAAGTATGCCTGCCGCAAAACTCTTGCGGACAGCAGACCTCGAGTTAGAGGAAGATTTGCGAAGAATGATGATTTTGGAGAGAATCATAGACCTTCTGGTAGCAACCATGAAGACGATGAAGACGATGAAGTAGTTGTGAAAGAGGAAGAGGATATGGTTGATTCCTCGGACATTTTCGCTCATATCAGTGGAGTGAACTCTTTCAAATGCAGCTATCCCATCCAATCCTGGATTTGA

Protein Analysis

435

Amino Acids

47.58

Weight (kDa)

4.2

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 337 - 379 9.9e-19 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 913
AciI CCGC 5 cut(s) 315, 584, 834, 1084, 1097
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 8 cut(s) 42, 66, 112, 203, 762, 837, 976, 1054
AcuI CTGAAG 3 cut(s) 495, 869, 897
AfaI GTAC 6 cut(s) 211, 274, 468, 582, 757, 1031
AfiI CCNNNNNNNGG 2 cut(s) 701, 913
AgsI TTSAA 4 cut(s) 48, 135, 661, 1276
AhlI ACTAGT 1 cut(s) 269
AjnI CCWGG 3 cut(s) 186, 216, 1298
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 2 cut(s) 994, 1284
AluI AGCT 2 cut(s) 994, 1284
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 1110
ApeKI GCWGC 9 cut(s) 7, 22, 25, 141, 181, 297, 734, 737, 1281
ApoI RAATTY 8 cut(s) 42, 66, 112, 203, 762, 837, 976, 1054
Asp700I GAANNNNTTC 2 cut(s) 882, 1271
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 2 cut(s) 25, 928
AsuII TTCGAA 1 cut(s) 618
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 1 cut(s) 692
BaeI ACNNNNGTAYC 2 cut(s) 1013, 1046
BbsI GAAGAC 4 cut(s) 885, 975, 1188, 1197
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 9 cut(s) 19, 34, 37, 128, 168, 309, 721, 749, 1293
BccI CCATC 3 cut(s) 443, 457, 1298
BciT130I CCWGG 3 cut(s) 188, 218, 1300
BciVI GTATCC 1 cut(s) 576
BcoDI GTCTC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 3 cut(s) 270, 294, 533
BfmI CTRYAG 2 cut(s) 107, 735
BfuI GTATCC 1 cut(s) 576
BmcAI AGTACT 1 cut(s) 757
Bme1390I CCNGG 3 cut(s) 188, 218, 1300
Bme18I GGWCC 1 cut(s) 692
BmeT110I CYCGRG 1 cut(s) 1110
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 3 cut(s) 188, 218, 1300
BmsI GCATC 1 cut(s) 879
BpiI GAAGAC 4 cut(s) 885, 975, 1188, 1197
Bpu14I TTCGAA 1 cut(s) 618
Bsa29I ATCGAT 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 6 cut(s) 186, 699, 820, 860, 960, 1236
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 913
Bse1I ACTGG 2 cut(s) 763, 918
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 3 cut(s) 188, 218, 1300
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 6 cut(s) 186, 699, 820, 860, 960, 1236
BseGI GGATG 3 cut(s) 43, 449, 1290
BseLI CCNNNNNNNGG 2 cut(s) 701, 913
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 5 cut(s) 108, 441, 651, 891, 942
BseNI ACTGG 2 cut(s) 763, 918
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 9 cut(s) 19, 34, 37, 128, 168, 309, 721, 749, 1293
BseYI CCCAGC 2 cut(s) 719, 926
BshVI ATCGAT 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 1110
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 2 cut(s) 701, 913
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 736
BsmI GAATGC 1 cut(s) 736
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 1110
Bsp119I TTCGAA 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 82
Bsp19I CCATGG 2 cut(s) 699, 960
BspACI CCGC 5 cut(s) 315, 584, 834, 1084, 1097
BspCNI CTCAG 5 cut(s) 109, 440, 650, 892, 943
BspDI ATCGAT 1 cut(s) 438
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 1 cut(s) 600
BspMAI CTGCAG 2 cut(s) 111, 739
BspPI GGATC 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 618
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 2 cut(s) 763, 918
BssECI CCNNGG 6 cut(s) 186, 699, 820, 860, 960, 1236
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 3 cut(s) 699, 820, 960
Bst2UI CCWGG 3 cut(s) 188, 218, 1300
Bst4CI ACNGT 2 cut(s) 564, 755
Bst6I CTCTTC 3 cut(s) 615, 673, 1212
BstAPI GCANNNNNTGC 1 cut(s) 746
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 3 cut(s) 319, 717, 1081
BstDEI CTNAG 5 cut(s) 117, 427, 637, 900, 951
BstDSI CCRYGG 2 cut(s) 699, 960
BstF5I GGATG 3 cut(s) 43, 449, 1290
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 350, 746
BstNI CCWGG 3 cut(s) 188, 218, 1300
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 3 cut(s) 186, 216, 1298
BstSFI CTRYAG 2 cut(s) 107, 735
BstV1I GCAGC 9 cut(s) 19, 34, 37, 128, 168, 309, 721, 749, 1293
BstV2I GAAGAC 4 cut(s) 885, 975, 1188, 1197
Bsu15I ATCGAT 1 cut(s) 438
BsuI GTATCC 1 cut(s) 576
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 2 cut(s) 699, 960
BtsCI GGATG 3 cut(s) 43, 449, 1290
BtsIMutI CAGTG 5 cut(s) 234, 519, 645, 911, 1264
Cac8I GCNNGC 3 cut(s) 319, 717, 1081
CaiI CAGNNNCTG 1 cut(s) 542
CciI TCATGA 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 692
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 6 cut(s) 210, 273, 467, 581, 756, 1030
CspCI CAANNNNNGTGG 4 cut(s) 355, 390, 792, 827
CviAII CATG 8 cut(s) 481, 592, 700, 712, 784, 961, 1033, 1178
CviJI RGCY 8 cut(s) 51, 431, 599, 788, 906, 926, 994, 1284
CviKI_1 RGCY 8 cut(s) 51, 431, 599, 788, 906, 926, 994, 1284
CviQI GTAC 6 cut(s) 210, 273, 467, 581, 756, 1030
DdeI CTNAG 5 cut(s) 117, 427, 637, 900, 951
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraI TTTAAA 1 cut(s) 982
Eam1104I CTCTTC 3 cut(s) 615, 673, 1212
EarI CTCTTC 3 cut(s) 615, 673, 1212
EciI GGCGGA 1 cut(s) 849
Eco130I CCWWGG 3 cut(s) 699, 820, 960
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 692
Eco57I CTGAAG 3 cut(s) 495, 869, 897
Eco88I CYCGRG 1 cut(s) 1110
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 186, 216, 1298
EcoT14I CCWWGG 3 cut(s) 699, 820, 960
ErhI CCWWGG 3 cut(s) 699, 820, 960
FaeI CATG 8 cut(s) 484, 595, 703, 715, 787, 964, 1036, 1181
FaqI GGGAC 1 cut(s) 736
FatI CATG 8 cut(s) 480, 591, 699, 711, 783, 960, 1032, 1177
FokI GGATG 3 cut(s) 50, 436, 1277
FspBI CTAG 3 cut(s) 270, 294, 533
GsaI CCCAGC 2 cut(s) 723, 930
Hin1II CATG 8 cut(s) 484, 595, 703, 715, 787, 964, 1036, 1181
HinfI GANTC 7 cut(s) 16, 398, 539, 851, 955, 1153, 1232
HphI GGTGA 2 cut(s) 25, 928
Hpy166II GTNNAC 1 cut(s) 1267
Hpy188I TCNGA 4 cut(s) 118, 793, 888, 1240
Hpy188III TCNNGA 3 cut(s) 86, 481, 848
Hpy8I GTNNAC 1 cut(s) 1267
HpyAV CCTTC 4 cut(s) 654, 684, 893, 1173
HpyCH4III ACNGT 2 cut(s) 564, 755
HpyCH4V TGCA 6 cut(s) 7, 109, 167, 737, 799, 1281
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 746
HpyF3I CTNAG 5 cut(s) 117, 427, 637, 900, 951
Hsp92II CATG 8 cut(s) 484, 595, 703, 715, 787, 964, 1036, 1181
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 256, 604, 704
Lsp1109I GCAGC 9 cut(s) 19, 34, 37, 128, 168, 309, 721, 749, 1293
LweI GCATC 1 cut(s) 879
MaeI CTAG 3 cut(s) 270, 294, 533
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 278
MroXI GAANNNNTTC 2 cut(s) 882, 1271
MseI TTAA 2 cut(s) 870, 981
MslI CAYNNNNRTG 2 cut(s) 512, 1257
MspR9I CCNGG 3 cut(s) 188, 218, 1300
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 3 cut(s) 188, 218, 1300
MwoI GCNNNNNNNGC 2 cut(s) 350, 746
NcoI CCATGG 2 cut(s) 699, 960
NdeII GATC 1 cut(s) 82
NlaIII CATG 8 cut(s) 484, 595, 703, 715, 787, 964, 1036, 1181
NlaIV GGNNCC 1 cut(s) 600
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 715
NspV TTCGAA 1 cut(s) 618
OliI CACNNNNGTG 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 1110
PagI TCATGA 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 1191
PctI GAATGC 1 cut(s) 736
PdmI GAANNNNTTC 2 cut(s) 882, 1271
PfeI GAWTC 7 cut(s) 16, 398, 539, 851, 955, 1153, 1232
PflMI CCANNNNNTGG 1 cut(s) 913
PfoI TCCNGGA 1 cut(s) 1298
Psp6I CCWGG 3 cut(s) 186, 216, 1298
PspFI CCCAGC 2 cut(s) 719, 926
PspGI CCWGG 3 cut(s) 186, 216, 1298
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 1 cut(s) 692
PspXI VCTCGAGB 1 cut(s) 1110
PstI CTGCAG 2 cut(s) 111, 739
PstNI CAGNNNCTG 1 cut(s) 542
RsaI GTAC 6 cut(s) 211, 274, 468, 582, 757, 1031
RsaNI GTAC 6 cut(s) 210, 273, 467, 581, 756, 1030
RseI CAYNNNNRTG 2 cut(s) 512, 1257
SaqAI TTAA 2 cut(s) 870, 981
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 692
ScaI AGTACT 1 cut(s) 757
ScrFI CCNGG 3 cut(s) 188, 218, 1300
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 1 cut(s) 879
SfcI CTRYAG 2 cut(s) 107, 735
Sfr274I CTCGAG 1 cut(s) 1110
SfuI TTCGAA 1 cut(s) 618
SinI GGWCC 1 cut(s) 692
SlaI CTCGAG 1 cut(s) 1110
SmiMI CAYNNNNRTG 2 cut(s) 512, 1257
SmlI CTYRAG 1 cut(s) 1110
SmoI CTYRAG 1 cut(s) 1110
SpeI ACTAGT 1 cut(s) 269
SsiI CCGC 5 cut(s) 315, 584, 834, 1084, 1097
SspMI CTAG 3 cut(s) 270, 294, 533
StyD4I CCNGG 3 cut(s) 186, 216, 1298
StyI CCWWGG 3 cut(s) 699, 820, 960
TaaI ACNGT 2 cut(s) 564, 755
TaqI TCGA 5 cut(s) 72, 414, 438, 618, 1111
TatI WGTACW 1 cut(s) 755
TauI GCSGC 1 cut(s) 1086
TfiI GAWTC 7 cut(s) 16, 398, 539, 851, 955, 1153, 1232
Tru1I TTAA 2 cut(s) 870, 981
Tru9I TTAA 2 cut(s) 870, 981
TscAI CASTG 5 cut(s) 241, 519, 645, 918, 1264
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 9 cut(s) 7, 22, 25, 141, 181, 297, 734, 737, 1281
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 8 cut(s) 54, 165, 743, 1049, 1062, 1194, 1203, 1212
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 5 cut(s) 241, 519, 645, 918, 1264
Van91I CCANNNNNTGG 1 cut(s) 913
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 8 cut(s) 42, 66, 112, 203, 762, 837, 976, 1054
XceI RCATGY 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 2 cut(s) 224, 827
XhoI CTCGAG 1 cut(s) 1110
XmnI GAANNNNTTC 2 cut(s) 882, 1271
XspI CTAG 3 cut(s) 270, 294, 533
ZrmI AGTACT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.