FvH4_4g04500

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0005795
Physical Location & Seq
Reverse (-)
3845622 .. 3850036
4415 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04500.t1

Sequence Viewer

Length: 1341 bp
ATGTTGCAGCAGGTGATTCAGCAGCAGCAACAGCAAGAACAGGATGAAATTTCAAGCCAGATTAGTGCTCAGATTTTCGAATTCTGCGATCCTGAACTATTCCAAGAGACCCTGCAGAATTCTGAGGTTACTTCTTCTCCAAATTGCTGCTATGATGAAAACTCCTCTTATGCAACAAATCTTTCTCTGCCCCAGGATTTAGAAACTAAATTCAGTACCTACCAGGATAGCAATGGCAACACTGACACAACCATTGCTCCCACAACAACTAGTACCACCACCACCACCAACACCACCACCACCACTAGCAGCGCAAACACCACCACTGCCAGTACCAACACCGCCAATATCAACGATACTACTGCCAGCACCAACACAACCACAACCAACAACAACAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATTGACAATGACATCTCAGCCTCCATTGATTTTTCTCCATCCCCTCCTTTTTCCGTACCTCCATTTCTCATGAGCCAACAAGACCAATTTGATTTCTCTTCAGTGCAACCTCAAATCCCATTAGCAGATTCTGTTGTTGAAGGATTTTCACAGTACCCTGCTGACCCTGTACCGTCTCTCATGTCGGCTCCATTGTCATCAGTTTTTGAAGAGGATTGCTTGTCCTCGGTACCTTCTTATGTGCCTTTGAACCCCTCTTCTCCTTCTTGTTCTTTTCTTGGTCCTACCATGGGAGCATACATGCCTGCTGGGACTATGAATGCTGCAGCATTATCTACTGACAGTACTGGAATTTTCACCAGTAGTATTCTCATGGCTTCTGAACTGCAACCACAAGACTTGGAATACCAAGGAGATAATGGTGGAATTTTCTGTCAAGAATCATTACAGAGGGGTTTCAACCCTGATGACCTTCAGGTGCTTGGTGCTGAGAGCCAACAACTGGTGAGTGGGACTGGGAATTCTACTTCTTTACCAACTGAGATTCCCATGGCAGAAGACCCAAATTTTAAAGTAGGGAAGCTATCGGTTGAGGAGAGGAAAGAAAAGATACATAGGTACATGAAGAAAAGGAATGAAAGAAATTTCACAAAGAAAATCAAGTATGCCTGCCGCAAAACACTTGCAGACAGCAGACCTCGAGTTAGAGGAAGATTTGCGAAGAATGATGATTTCGGAGAGAATCATAGACCTTCTGGTTGCAACCATGAGGACGATGAAGACGATGAAGTAGTTGTGAAAGAGGAAGAGGATATGGTTGATTCCTCGGACATCTTCGCACATATCAGTGGAGTGAACTCTTTCAAATGCAGCTATCCCATCCAATCCTGGATTTGA

Protein Analysis

447

Amino Acids

48.88

Weight (kDa)

4.19

Isoelectric Point (pI)

59.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 348 - 390 1e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 673
AccB1I GGYRCC 1 cut(s) 673
AccB7I CCANNNNNTGG 1 cut(s) 946
AciI CCGC 2 cut(s) 342, 1117
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 9 cut(s) 48, 80, 118, 209, 795, 870, 964, 1009, 1087
AcuI CTGAAG 2 cut(s) 528, 902
AfaI GTAC 9 cut(s) 217, 274, 334, 501, 599, 615, 675, 790, 1064
AfiI CCNNNNNNNGG 2 cut(s) 734, 946
AgsI TTSAA 6 cut(s) 54, 584, 653, 694, 904, 1309
AhlI ACTAGT 1 cut(s) 269
AjnI CCWGG 3 cut(s) 192, 222, 1331
AluBI AGCT 2 cut(s) 1027, 1317
AluI AGCT 2 cut(s) 1027, 1317
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 101, 624
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 1143
ApeKI GCWGC 8 cut(s) 7, 22, 25, 147, 309, 767, 770, 1314
ApoI RAATTY 9 cut(s) 48, 80, 118, 209, 795, 870, 964, 1009, 1087
Asp700I GAANNNNTTC 1 cut(s) 1304
Asp718I GGTACC 1 cut(s) 673
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 725
AsuHPI GGTGA 3 cut(s) 25, 793, 961
AsuII TTCGAA 1 cut(s) 78
AvaI CYCGRG 1 cut(s) 1143
AvaII GGWCC 1 cut(s) 725
BaeI ACNNNNGTAYC 2 cut(s) 1046, 1079
BanI GGYRCC 1 cut(s) 673
BbsI GAAGAC 2 cut(s) 1008, 1230
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 8 cut(s) 19, 34, 37, 134, 321, 754, 782, 1326
BccI CCATC 2 cut(s) 490, 1331
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 3 cut(s) 194, 224, 1333
BcoDI GTCTC 2 cut(s) 101, 624
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 2 cut(s) 270, 306
BfmI CTRYAG 2 cut(s) 113, 768
BisI GCNGC 9 cut(s) 8, 23, 26, 148, 310, 768, 771, 1117, 1315
BlsI GCNGC 9 cut(s) 9, 24, 27, 149, 311, 769, 772, 1118, 1316
BmcAI AGTACT 1 cut(s) 790
Bme1390I CCNGG 3 cut(s) 194, 224, 1333
Bme18I GGWCC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 1143
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 2 cut(s) 633, 675
BmrFI CCNGG 3 cut(s) 194, 224, 1333
BmrI ACTGGG 1 cut(s) 969
BmuI ACTGGG 1 cut(s) 969
BpiI GAAGAC 2 cut(s) 1008, 1230
Bpu14I TTCGAA 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 6 cut(s) 192, 669, 732, 853, 993, 1269
BsaXI ACNNNNNCTCC 4 cut(s) 121, 151, 241, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 734, 946
Bse1I ACTGG 5 cut(s) 330, 796, 804, 951, 964
Bse3DI GCAATG 2 cut(s) 238, 252
BseBI CCWGG 3 cut(s) 194, 224, 1333
BseDI CCNNGG 6 cut(s) 192, 669, 732, 853, 993, 1269
BseGI GGATG 3 cut(s) 49, 482, 1323
BseLI CCNNNNNNNGG 2 cut(s) 734, 946
BseMI GCAATG 2 cut(s) 238, 252
BseMII CTCAG 5 cut(s) 83, 114, 474, 924, 975
BseNI ACTGG 5 cut(s) 330, 796, 804, 951, 964
BseRI GAGGAG 2 cut(s) 154, 1052
BseXI GCAGC 8 cut(s) 19, 34, 37, 134, 321, 754, 782, 1326
BseYI CCCAGC 1 cut(s) 752
BshNI GGYRCC 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 1143
BslFI GGGAC 2 cut(s) 769, 970
BslI CCNNNNNNNGG 2 cut(s) 734, 946
BsmAI GTCTC 2 cut(s) 101, 624
BsmBI CGTCTC 1 cut(s) 624
BsmFI GGGAC 2 cut(s) 769, 970
BsmI GAATGC 1 cut(s) 769
Bso31I GGTCTC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 1143
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 2 cut(s) 732, 993
BspACI CCGC 2 cut(s) 342, 1117
BspCNI CTCAG 5 cut(s) 82, 115, 473, 925, 976
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 633, 675
BspMAI CTGCAG 2 cut(s) 117, 772
BspPI GGATC 1 cut(s) 83
BspT104I TTCGAA 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 673
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 238, 252
BsrI ACTGG 5 cut(s) 330, 796, 804, 951, 964
BssECI CCNNGG 6 cut(s) 192, 669, 732, 853, 993, 1269
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 3 cut(s) 732, 853, 993
Bst2UI CCWGG 3 cut(s) 194, 224, 1333
Bst4CI ACNGT 3 cut(s) 597, 618, 788
Bst6I CTCTTC 4 cut(s) 547, 648, 706, 1245
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 367, 750, 1114
BstDEI CTNAG 5 cut(s) 69, 123, 460, 933, 984
BstDSI CCRYGG 2 cut(s) 732, 993
BstF5I GGATG 3 cut(s) 49, 482, 1323
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 101, 624
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 3 cut(s) 194, 224, 1333
BstNSI RCATGY 1 cut(s) 748
BstSCI CCNGG 3 cut(s) 192, 222, 1331
BstSFI CTRYAG 2 cut(s) 113, 768
BstV1I GCAGC 8 cut(s) 19, 34, 37, 134, 321, 754, 782, 1326
BstV2I GAAGAC 2 cut(s) 1008, 1230
BtgI CCRYGG 2 cut(s) 732, 993
BtsCI GGATG 3 cut(s) 49, 482, 1323
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 4 cut(s) 240, 324, 552, 1297
Cac8I GCNNGC 3 cut(s) 367, 750, 1114
CaiI CAGNNNCTG 1 cut(s) 575
CciI TCATGA 1 cut(s) 513
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 725
Csp6I GTAC 9 cut(s) 216, 273, 333, 500, 598, 614, 674, 789, 1063
CspCI CAANNNNNGTGG 4 cut(s) 388, 423, 825, 860
CviAII CATG 8 cut(s) 514, 625, 733, 745, 817, 994, 1066, 1211
CviJI RGCY 8 cut(s) 57, 464, 519, 632, 821, 939, 1027, 1317
CviKI_1 RGCY 8 cut(s) 57, 464, 519, 632, 821, 939, 1027, 1317
CviQI GTAC 9 cut(s) 216, 273, 333, 500, 598, 614, 674, 789, 1063
DdeI CTNAG 5 cut(s) 69, 123, 460, 933, 984
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 1015
Eam1104I CTCTTC 4 cut(s) 547, 648, 706, 1245
EarI CTCTTC 4 cut(s) 547, 648, 706, 1245
Eco130I CCWWGG 3 cut(s) 732, 853, 993
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 528, 902
Eco88I CYCGRG 1 cut(s) 1143
EcoRI GAATTC 3 cut(s) 80, 118, 964
EcoRII CCWGG 3 cut(s) 192, 222, 1331
EcoT14I CCWWGG 3 cut(s) 732, 853, 993
ErhI CCWWGG 3 cut(s) 732, 853, 993
Esp3I CGTCTC 1 cut(s) 624
FaeI CATG 8 cut(s) 517, 628, 736, 748, 820, 997, 1069, 1214
FaqI GGGAC 2 cut(s) 769, 970
FatI CATG 8 cut(s) 513, 624, 732, 744, 816, 993, 1065, 1210
Fnu4HI GCNGC 9 cut(s) 8, 23, 26, 148, 310, 768, 771, 1117, 1315
FokI GGATG 3 cut(s) 56, 469, 1310
Fsp4HI GCNGC 9 cut(s) 8, 23, 26, 148, 310, 768, 771, 1117, 1315
FspBI CTAG 2 cut(s) 270, 306
GlaI GCGC 1 cut(s) 313
GluI GCNGC 9 cut(s) 8, 23, 26, 148, 310, 768, 771, 1117, 1315
GsaI CCCAGC 1 cut(s) 756
HhaI GCGC 1 cut(s) 314
Hin1II CATG 8 cut(s) 517, 628, 736, 748, 820, 997, 1069, 1214
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 7 cut(s) 16, 431, 572, 884, 988, 1186, 1265
HphI GGTGA 3 cut(s) 25, 793, 961
Hpy166II GTNNAC 1 cut(s) 1300
Hpy188I TCNGA 5 cut(s) 72, 124, 826, 1181, 1273
Hpy188III TCNNGA 3 cut(s) 92, 514, 881
Hpy8I GTNNAC 1 cut(s) 1300
HpyAV CCTTC 5 cut(s) 578, 687, 717, 926, 1206
HpyCH4III ACNGT 3 cut(s) 597, 618, 788
HpyCH4V TGCA 9 cut(s) 7, 115, 173, 550, 770, 832, 1130, 1206, 1314
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 5 cut(s) 69, 123, 460, 933, 984
Hsp92II CATG 8 cut(s) 517, 628, 736, 748, 820, 997, 1069, 1214
HspAI GCGC 1 cut(s) 312
KpnI GGTACC 1 cut(s) 677
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 262, 637, 737
Lsp1109I GCAGC 8 cut(s) 19, 34, 37, 134, 321, 754, 782, 1326
MaeI CTAG 2 cut(s) 270, 306
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 1304
MseI TTAA 1 cut(s) 1014
MslI CAYNNNNRTG 1 cut(s) 1290
MspR9I CCNGG 3 cut(s) 194, 224, 1333
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 3 cut(s) 194, 224, 1333
MwoI GCNNNNNNNGC 1 cut(s) 31
NcoI CCATGG 2 cut(s) 732, 993
NdeII GATC 1 cut(s) 88
NlaIII CATG 8 cut(s) 517, 628, 736, 748, 820, 997, 1069, 1214
NlaIV GGNNCC 2 cut(s) 633, 675
NspI RCATGY 1 cut(s) 748
NspV TTCGAA 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 1143
PagI TCATGA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 1224
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 1 cut(s) 1304
PfeI GAWTC 7 cut(s) 16, 431, 572, 884, 988, 1186, 1265
PflMI CCANNNNNTGG 1 cut(s) 946
PfoI TCCNGGA 1 cut(s) 1331
PkrI GCNGC 9 cut(s) 9, 24, 27, 149, 311, 769, 772, 1118, 1316
Psp6I CCWGG 3 cut(s) 192, 222, 1331
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 3 cut(s) 192, 222, 1331
PspN4I GGNNCC 2 cut(s) 633, 675
PspPI GGNCC 1 cut(s) 725
PspXI VCTCGAGB 1 cut(s) 1143
PstI CTGCAG 2 cut(s) 117, 772
PstNI CAGNNNCTG 1 cut(s) 575
RsaI GTAC 9 cut(s) 217, 274, 334, 501, 599, 615, 675, 790, 1064
RsaNI GTAC 9 cut(s) 216, 273, 333, 500, 598, 614, 674, 789, 1063
RseI CAYNNNNRTG 1 cut(s) 1290
SaqAI TTAA 1 cut(s) 1014
SatI GCNGC 9 cut(s) 8, 23, 26, 148, 310, 768, 771, 1117, 1315
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 725
ScaI AGTACT 1 cut(s) 790
ScrFI CCNGG 3 cut(s) 194, 224, 1333
SduI GDGCHC 1 cut(s) 70
SfcI CTRYAG 2 cut(s) 113, 768
Sfr274I CTCGAG 1 cut(s) 1143
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 1 cut(s) 725
SlaI CTCGAG 1 cut(s) 1143
SmiMI CAYNNNNRTG 1 cut(s) 1290
SmlI CTYRAG 1 cut(s) 1143
SmoI CTYRAG 1 cut(s) 1143
SpeI ACTAGT 1 cut(s) 269
SsiI CCGC 2 cut(s) 342, 1117
SspMI CTAG 2 cut(s) 270, 306
StyD4I CCNGG 3 cut(s) 192, 222, 1331
StyI CCWWGG 3 cut(s) 732, 853, 993
TaaI ACNGT 3 cut(s) 597, 618, 788
TaqI TCGA 2 cut(s) 78, 1144
TatI WGTACW 1 cut(s) 788
TauI GCSGC 1 cut(s) 1119
TfiI GAWTC 7 cut(s) 16, 431, 572, 884, 988, 1186, 1265
Tru1I TTAA 1 cut(s) 1014
Tru9I TTAA 1 cut(s) 1014
TscAI CASTG 4 cut(s) 247, 331, 552, 1297
TseI GCWGC 8 cut(s) 7, 22, 25, 147, 309, 767, 770, 1314
TspDTI ATGAA 7 cut(s) 60, 171, 776, 1082, 1095, 1236, 1245
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 4 cut(s) 247, 331, 552, 1297
Van91I CCANNNNNTGG 1 cut(s) 946
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 9 cut(s) 48, 80, 118, 209, 795, 870, 964, 1009, 1087
XceI RCATGY 1 cut(s) 748
XcmI CCANNNNNNNNNTGG 2 cut(s) 230, 860
XhoI CTCGAG 1 cut(s) 1143
XmnI GAANNNNTTC 1 cut(s) 1304
XspI CTAG 2 cut(s) 270, 306
ZrmI AGTACT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.