MD16G1225800.v1.1

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0005795
Physical Location & Seq
Reverse (-)
22803692 .. 22807961
4270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1225800.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGTTGCAGCATATGACCCAGCAGCAGCAGCAACAGCAGGCGCAGGATGAAATTTCTAGCCAGATTAGCGCTCAAATATTTGAATTTTGCGACCCGGAACTATTCCAAGAGACCCTACAGAATTCCGAGGTCACCACTTCTCCAAATTGCTGCTACGAAGAAAATTCATCCTTTGCAACAAACCTTTCACTACCCCCAGATATAGAAACCACGTTCTGTATCTACCCAGACAACAATGGTAATACTGACGCAAACATTTCCCAAACCCCCACAACTAATAGCACCAACACCACCACCACTGCTGCCAGCGTTCATACCACCGCAACCACCACCACTAATGCCACCAACAACAATAGTGGCAACCTTTCCATAATCTTTGATTCCCAAGAGGAAATTGACAATGATATATCAGCTTCCATTGATTTTTCTCCATCCCCACCCTTTTCGGTACCTTCGTTTCTCATAAACCCGCAAGATCAATTTGATTTCTCTCAAATTCCATTAGCAGATCCTGTTGTTGAGGGATTTTCACAGTACCCTGCCGAACCTGTACCAACTCTTATGACAGCTCCAATAGCATCGGTTTTTGAAGAGGATTGCTTGTCTTCAGTGCCTTCTTATGTTCCTTTGAACCCTTCTTCTCCTCCCTGTTCATTTCTCGGTCCTCCTATGGGACCCTACATGCCTACTGGGCCTATAAATCCTGCTGCATTATCAGCTGACGGTACTGGAATTTTCACCAGCAGCATTCTTATGGCTTCTGAACTGCAACAGAAAGACTTGGAATATCAGGGAGACAGTGGCGGAATTTTCTGTCCAGATTCATTATCGAGGGTTTTTAACCCCGAAGAGCTTCAGGCACTTAGTGCTGAGAGTCAGCAACTGGTGAGTGGGGGTGGGAACTCTACTTCTTTACCAACTGAGATTCCAATAGCCGAAGACCCAAATTTTAAAGTAGGCAAGCTCTCTGTTGAAGAGAGGAAAGAAAAGATCCACAGGTACATGAAGAAAAGGAATGAGAGGAACTTCACCAAGAAAATCAAGTATGCCTGCCGCAAAACACTTGCTGACAGCAGACCTCGAGTCCGAGGAAGATTTGCAAAGAACGATGACTTTGGAGAGACCCACAGATCTGCTGGAAGCAATCATGAAGATGATGAAGATGATGAAGTAGCTGTGAAAGAGGAAGAGGATTTGGCTGATTCTTCGGATATCTTTGCTCATATCAGTGGAGTGAACTCTTTCAAATGCAGCTACCCAATCCAGTCCTGGATTTGA

Protein Analysis

426

Amino Acids

46.53

Weight (kDa)

4.3

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 327 - 369 9.6e-19 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AciI CCGC 4 cut(s) 321, 470, 804, 1054
AclWI GGATC 2 cut(s) 503, 985
AcsI RAATTY 8 cut(s) 51, 83, 121, 163, 495, 732, 807, 946
AcuI CTGAAG 2 cut(s) 591, 839
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 5 cut(s) 450, 536, 552, 727, 1001
AfeI AGCGCT 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 671
AgsI TTSAA 5 cut(s) 83, 590, 631, 974, 1246
AhdI GACNNNNNGTC 1 cut(s) 1082
AjnI CCWGG 1 cut(s) 1268
AluBI AGCT 7 cut(s) 413, 569, 719, 853, 964, 1175, 1254
AluI AGCT 7 cut(s) 413, 569, 719, 853, 964, 1175, 1254
Alw26I GTCTC 3 cut(s) 104, 789, 1115
AlwI GGATC 2 cut(s) 503, 985
AlwNI CAGNNNCTG 2 cut(s) 512, 883
Ama87I CYCGRG 1 cut(s) 1080
Aor51HI AGCGCT 1 cut(s) 70
AoxI GGCC 1 cut(s) 692
ApeKI GCWGC 9 cut(s) 7, 22, 25, 28, 150, 302, 707, 744, 1251
ApoI RAATTY 8 cut(s) 51, 83, 121, 163, 495, 732, 807, 946
Asp700I GAANNNNTTC 2 cut(s) 852, 1241
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 2 cut(s) 43, 71
AspS9I GGNCC 3 cut(s) 662, 674, 692
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 4 cut(s) 124, 730, 898, 1021
AvaI CYCGRG 1 cut(s) 1080
AvaII GGWCC 2 cut(s) 662, 674
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BanI GGYRCC 1 cut(s) 448
BbsI GAAGAC 2 cut(s) 597, 945
BbvI GCAGC 9 cut(s) 19, 34, 37, 40, 137, 289, 694, 756, 1263
BccI CCATC 1 cut(s) 439
BciT130I CCWGG 1 cut(s) 1270
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 3 cut(s) 104, 789, 1115
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 72
BglI GCCNNNNNGGC 1 cut(s) 691
BglII AGATCT 1 cut(s) 1130
Bme1390I CCNGG 2 cut(s) 95, 1270
Bme18I GGWCC 2 cut(s) 662, 674
BmeRI GACNNNNNGTC 1 cut(s) 1082
BmeT110I CYCGRG 1 cut(s) 1080
BmgT120I GGNCC 3 cut(s) 662, 674, 692
BmiI GGNNCC 3 cut(s) 450, 675, 676
BmrFI CCNGG 2 cut(s) 95, 1270
BmrI ACTGGG 1 cut(s) 699
BmsI GCATC 1 cut(s) 587
BmuI ACTGGG 1 cut(s) 699
BpiI GAAGAC 2 cut(s) 597, 945
BpuMI CCSGG 1 cut(s) 95
BsaI GGTCTC 2 cut(s) 104, 1115
BsaJI CCNNGG 2 cut(s) 126, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse1I ACTGG 4 cut(s) 694, 733, 888, 1264
BseBI CCWGG 1 cut(s) 1270
BseDI CCNNGG 2 cut(s) 126, 1087
BseGI GGATG 3 cut(s) 52, 167, 431
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMII CTCAG 2 cut(s) 861, 912
BseNI ACTGG 4 cut(s) 694, 733, 888, 1264
BseRI GAGGAG 1 cut(s) 633
BseXI GCAGC 9 cut(s) 19, 34, 37, 40, 137, 289, 694, 756, 1263
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 1 cut(s) 694
BshNI GGYRCC 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 1080
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 3 cut(s) 104, 789, 1115
BsmFI GGGAC 1 cut(s) 687
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 1 cut(s) 694
Bso31I GGTCTC 2 cut(s) 104, 1115
BsoBI CYCGRG 1 cut(s) 1080
Bsp143I GATC 4 cut(s) 475, 508, 990, 1130
BspACI CCGC 4 cut(s) 321, 470, 804, 1054
BspANI GGCC 1 cut(s) 694
BspCNI CTCAG 2 cut(s) 862, 913
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 3 cut(s) 450, 675, 676
BspPI GGATC 2 cut(s) 503, 985
BspQI GCTCTTC 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 448
BspTNI GGTCTC 2 cut(s) 104, 1115
BsrI ACTGG 4 cut(s) 694, 733, 888, 1264
BssECI CCNNGG 2 cut(s) 126, 1087
BssMI GATC 4 cut(s) 475, 508, 990, 1130
Bst2UI CCWGG 1 cut(s) 1270
Bst4CI ACNGT 3 cut(s) 534, 725, 800
Bst6I CTCTTC 4 cut(s) 585, 843, 969, 1182
BstAPI GCANNNNNTGC 1 cut(s) 866
BstC8I GCNNGC 4 cut(s) 39, 307, 962, 1051
BstDEI CTNAG 3 cut(s) 863, 870, 921
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 3 cut(s) 52, 167, 431
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 2 cut(s) 43, 71
BstKTI GATC 4 cut(s) 478, 511, 993, 1133
BstMAI GTCTC 3 cut(s) 104, 789, 1115
BstMBI GATC 4 cut(s) 475, 508, 990, 1130
BstMWI GCNNNNNNNGC 7 cut(s) 28, 34, 66, 575, 691, 716, 866
BstNI CCWGG 1 cut(s) 1270
BstNSI RCATGY 1 cut(s) 685
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 93, 1268
BstSFI CTRYAG 1 cut(s) 116
BstV1I GCAGC 9 cut(s) 19, 34, 37, 40, 137, 289, 694, 756, 1263
BstV2I GAAGAC 2 cut(s) 597, 945
BstX2I RGATCY 3 cut(s) 508, 990, 1130
BstYI RGATCY 3 cut(s) 508, 990, 1130
BsuRI GGCC 1 cut(s) 694
BtsCI GGATG 3 cut(s) 52, 167, 431
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 4 cut(s) 297, 615, 805, 1234
Cac8I GCNNGC 4 cut(s) 39, 307, 962, 1051
CaiI CAGNNNCTG 2 cut(s) 512, 883
CciI TCATGA 1 cut(s) 1147
CfoI GCGC 2 cut(s) 43, 71
Cfr13I GGNCC 3 cut(s) 662, 674, 692
CseI GACGC 1 cut(s) 257
Csp6I GTAC 5 cut(s) 449, 535, 551, 726, 1000
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 3 cut(s) 682, 1003, 1148
CviQI GTAC 5 cut(s) 449, 535, 551, 726, 1000
DdeI CTNAG 3 cut(s) 863, 870, 921
DpnI GATC 4 cut(s) 477, 510, 992, 1132
DpnII GATC 4 cut(s) 475, 508, 990, 1130
DraI TTTAAA 1 cut(s) 952
DraIII CACNNNGTG 1 cut(s) 866
DriI GACNNNNNGTC 1 cut(s) 1082
Eam1104I CTCTTC 4 cut(s) 585, 843, 969, 1182
Eam1105I GACNNNNNGTC 1 cut(s) 1082
EarI CTCTTC 4 cut(s) 585, 843, 969, 1182
EciI GGCGGA 1 cut(s) 819
Eco31I GGTCTC 2 cut(s) 104, 1115
Eco32I GATATC 1 cut(s) 1213
Eco47I GGWCC 2 cut(s) 662, 674
Eco47III AGCGCT 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 591, 839
Eco88I CYCGRG 1 cut(s) 1080
Eco91I GGTNACC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 1268
EcoRV GATATC 1 cut(s) 1213
FaeI CATG 3 cut(s) 685, 1006, 1151
FaqI GGGAC 1 cut(s) 687
FatI CATG 3 cut(s) 681, 1002, 1147
FauI CCCGC 1 cut(s) 477
FauNDI CATATG 1 cut(s) 12
FokI GGATG 3 cut(s) 59, 154, 418
FspBI CTAG 1 cut(s) 57
GlaI GCGC 2 cut(s) 42, 70
GsaI CCCAGC 1 cut(s) 22
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 1 cut(s) 694
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 257
HhaI GCGC 2 cut(s) 43, 71
Hin1II CATG 3 cut(s) 685, 1006, 1151
Hin6I GCGC 2 cut(s) 41, 69
HinP1I GCGC 2 cut(s) 41, 69
HinfI GANTC 6 cut(s) 380, 821, 874, 925, 1083, 1202
HpaII CCGG 1 cut(s) 95
HphI GGTGA 4 cut(s) 124, 730, 898, 1021
Hpy166II GTNNAC 1 cut(s) 1237
Hpy188I TCNGA 4 cut(s) 127, 763, 1088, 1210
Hpy188III TCNNGA 2 cut(s) 818, 1148
Hpy8I GTNNAC 1 cut(s) 1237
HpyAV CCTTC 3 cut(s) 462, 624, 645
HpyCH4III ACNGT 3 cut(s) 534, 725, 800
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 6 cut(s) 7, 176, 710, 769, 1100, 1251
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 34, 66, 575, 691, 716, 866
HpyF3I CTNAG 3 cut(s) 863, 870, 921
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 3 cut(s) 685, 1006, 1151
HspAI GCGC 2 cut(s) 41, 69
KflI GGGWCCC 1 cut(s) 674
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 4 cut(s) 475, 508, 990, 1130
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 9 cut(s) 19, 34, 37, 40, 137, 289, 694, 756, 1263
LweI GCATC 1 cut(s) 587
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 130
MalI GATC 4 cut(s) 477, 510, 992, 1132
MboI GATC 4 cut(s) 475, 508, 990, 1130
MflI RGATCY 3 cut(s) 508, 990, 1130
MlyI GAGTC 2 cut(s) 883, 1092
MroXI GAANNNNTTC 2 cut(s) 852, 1241
MseI TTAA 2 cut(s) 840, 951
MslI CAYNNNNRTG 3 cut(s) 752, 1152, 1227
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 95, 1270
Mva1269I GAATGC 1 cut(s) 747
MvaI CCWGG 1 cut(s) 1270
MwoI GCNNNNNNNGC 7 cut(s) 28, 34, 66, 575, 691, 716, 866
NciI CCSGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 12
NdeII GATC 4 cut(s) 475, 508, 990, 1130
NlaIII CATG 3 cut(s) 685, 1006, 1151
NlaIV GGNNCC 3 cut(s) 450, 675, 676
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 685
PaeR7I CTCGAG 1 cut(s) 1080
PagI TCATGA 1 cut(s) 1147
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 2 cut(s) 852, 1241
PfeI GAWTC 4 cut(s) 380, 821, 925, 1202
PfoI TCCNGGA 1 cut(s) 1268
PleI GAGTC 2 cut(s) 882, 1091
PpsI GAGTC 2 cut(s) 882, 1091
PpuMI RGGWCCY 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 1268
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 1268
PspN4I GGNNCC 3 cut(s) 450, 675, 676
PspPI GGNCC 3 cut(s) 662, 674, 692
PspPPI RGGWCCY 1 cut(s) 674
PspXI VCTCGAGB 1 cut(s) 1080
PstNI CAGNNNCTG 2 cut(s) 512, 883
PsuI RGATCY 3 cut(s) 508, 990, 1130
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 5 cut(s) 450, 536, 552, 727, 1001
RsaNI GTAC 5 cut(s) 449, 535, 551, 726, 1000
RseI CAYNNNNRTG 3 cut(s) 752, 1152, 1227
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 2 cut(s) 840, 951
Sau3AI GATC 4 cut(s) 475, 508, 990, 1130
Sau96I GGNCC 3 cut(s) 662, 674, 692
SchI GAGTC 2 cut(s) 883, 1092
ScrFI CCNGG 2 cut(s) 95, 1270
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 1 cut(s) 116
Sfr274I CTCGAG 1 cut(s) 1080
SinI GGWCC 2 cut(s) 662, 674
SlaI CTCGAG 1 cut(s) 1080
SmiMI CAYNNNNRTG 3 cut(s) 752, 1152, 1227
SmlI CTYRAG 1 cut(s) 1080
SmoI CTYRAG 1 cut(s) 1080
SsiI CCGC 4 cut(s) 321, 470, 804, 1054
SspI AATATT 1 cut(s) 78
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 93, 1268
TaaI ACNGT 3 cut(s) 534, 725, 800
TaiI ACGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 830, 1081
TaqII GACCGA 1 cut(s) 650
TauI GCSGC 1 cut(s) 1056
TfiI GAWTC 4 cut(s) 380, 821, 925, 1202
Tru1I TTAA 2 cut(s) 840, 951
Tru9I TTAA 2 cut(s) 840, 951
TscAI CASTG 4 cut(s) 304, 615, 805, 1234
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 9 cut(s) 7, 22, 25, 28, 150, 302, 707, 744, 1251
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 9 cut(s) 63, 156, 302, 642, 813, 1019, 1164, 1173, 1182
TspRI CASTG 4 cut(s) 304, 615, 805, 1234
VpaK11BI GGWCC 2 cut(s) 662, 674
XapI RAATTY 8 cut(s) 51, 83, 121, 163, 495, 732, 807, 946
XceI RCATGY 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 2 cut(s) 1133, 1266
XhoI CTCGAG 1 cut(s) 1080
XmnI GAANNNNTTC 2 cut(s) 852, 1241
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.