Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Reverse (-)

3347336 .. 3352396

Gene Structure 5061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G047400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGAAGATTGGTCCACGGAAACCACTTTAAAAAACCTGGGAAAACTATCTCATTGTATTTTATACTTTTCATATGCTTGCTTCATGCATATAGAAAGAGAAAAACAGAGGGATGGAGGGAGGGAAAGCTCTACTGTGACACAGGATGAAATTTCCAGCCAGATTAGTGCTCAAATTTTTGATTTTTGTGATCCTGAACTATTCCAAGAGACCCTACAGAATTCCGAGGTCACTTCTTCTCCAAATTGCTGCTATGAAGAAAACTCCTCCTTTGCTACAAATCTTTCACTTCCCCCAGACATAGAAACTAAGTTCAGTACCTACCAGGATAACAATGGCAATACTGACACAACCATTGCACAAACCCCCACAACAACTAGCACCACTACCACAACCACAAGCACCAACACCACCACCACTGCCGCTAGCACTAACACCGTCACCAACACCACCAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATTGATAATGATATATCAGCTTCCATCGATTTTTCTCAATCCCCTCCTTTTTCTGTGCCTCCATTTCTCATACCCCAACAAGAACAATTTGATTTCTCTTCAGTGCCACCTCAAATCTCCTTAGCAGATTCTGTTGTTGAGGGATTTTCTCAGTACCCTGCTGAACCTGTAGTGCCTCTTATGCCGGCTTCATTATCATCGGTTTTTGAAGAGGATTGCTTGTCTTCAGTGCCTTCTTATGTTCCTTTGAACCCTTCTTCTCCTCCTTGTTCTTTTCTTGGTCCTGGTATGGGACCACCATACATGACTGCTGGGACTATAAATCCTGCTGCATTATCTGCTGACAGTTCTGGAATTTTCACCAGCAGCATCCTTATGGCTTCTGAACTTCAACCGCAAGATTTGGAATATCAGGGAGACAATGGTGGAATTTTCTGTCAAGAATCATTACCCAGGGTTTTTAACCCCGAAGATCTTCAGGCACTTAGTGCTGAGAGTCAACAACTGGTGAATGGAGCTGGGAATTCTACTTCTTTACCAACAGAGATTCCAATAGCAGAAGACCCAAATTTTAAAGTAGGAAAGCTCTCTGTTGAAGAAAGGAAAGAGAAAATCCATAGGTACATGAAGAAAAGGAATGAAAGGAATTTCACCAAGAAAATCAAGTACGCCTGCCGCAAAACACTTGCAGACAGCAGACCTCGAGTCAGAGGAAGATTTGCGAAGAACGATGACTTCGGAGAGACTCATAGACCTGCTTGTAGCAACCATGAAGACGATGAAGACGATGAAGTAGTTGTGAAAGAGGAAGAGGATTTGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGAGTGAACTCTTTCAAATGCAGCTATCCCATCCAATCGTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

467

Amino Acids

51.29

Weight (kDa)

4.37

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1264
AciI	CCGC	3 cut(s)	423, 896, 1177
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	8 cut(s)	150, 174, 220, 855, 930, 1024, 1069, 1147
AcuI	CTGAAG	3 cut(s)	585, 711, 962
AdeI	CACNNNGTG	1 cut(s)	989
AfaI	GTAC	4 cut(s)	319, 656, 1124, 1169
AfiI	CCNNNNNNNGG	1 cut(s)	791
AgsI	TTSAA	5 cut(s)	710, 751, 893, 1097, 1369
AhdI	GACNNNNNGTC	1 cut(s)	1205
AjnI	CCWGG	4 cut(s)	36, 324, 784, 953
AluBI	AGCT	5 cut(s)	129, 521, 1019, 1087, 1377
AluI	AGCT	5 cut(s)	129, 521, 1019, 1087, 1377
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	3 cut(s)	203, 912, 1238
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	1203
ApeKI	GCWGC	4 cut(s)	249, 830, 867, 1374
ApoI	RAATTY	8 cut(s)	150, 174, 220, 855, 930, 1024, 1069, 1147
Asp700I	GAANNNNTTC	2 cut(s)	975, 1364
AspS9I	GGNCC	3 cut(s)	12, 782, 794
AsuHPI	GGTGA	4 cut(s)	433, 853, 1021, 1144
AsuNHI	GCTAGC	1 cut(s)	425
AvaI	CYCGRG	1 cut(s)	1203
AvaII	GGWCC	3 cut(s)	12, 782, 794
BbsI	GAAGAC	4 cut(s)	717, 1068, 1281, 1290
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	236, 817, 879, 1386
BccI	CCATC	3 cut(s)	107, 533, 1391
BciT130I	CCWGG	4 cut(s)	38, 326, 786, 955
BcoDI	GTCTC	3 cut(s)	203, 912, 1238
BfaI	CTAG	2 cut(s)	378, 426
BfmI	CTRYAG	2 cut(s)	215, 669
BfuAI	ACCTGC	1 cut(s)	1264
BglII	AGATCT	1 cut(s)	973
BisI	GCNGC	6 cut(s)	250, 423, 831, 868, 1177, 1375
BlsI	GCNGC	6 cut(s)	251, 424, 832, 869, 1178, 1376
Bme1390I	CCNGG	4 cut(s)	38, 326, 786, 955
Bme18I	GGWCC	3 cut(s)	12, 782, 794
BmeRI	GACNNNNNGTC	1 cut(s)	1205
BmeT110I	CYCGRG	1 cut(s)	1203
BmgT120I	GGNCC	3 cut(s)	12, 782, 794
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	4 cut(s)	38, 326, 786, 955
BmsI	GCATC	1 cut(s)	879
BmtI	GCTAGC	1 cut(s)	429
BpiI	GAAGAC	4 cut(s)	717, 1068, 1281, 1290
Bpu10I	CCTNAGC	1 cut(s)	622
Bsa29I	ATCGAT	1 cut(s)	528
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	5 cut(s)	15, 37, 225, 953, 954
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	791
Bse118I	RCCGGY	1 cut(s)	685
Bse1I	ACTGG	1 cut(s)	1011
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	4 cut(s)	38, 326, 786, 955
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	5 cut(s)	15, 37, 225, 953, 954
BseGI	GGATG	4 cut(s)	118, 151, 870, 1383
BseLI	CCNNNNNNNGG	1 cut(s)	791
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	665, 984, 1344
BseNI	ACTGG	1 cut(s)	1011
BseRI	GAGGAG	2 cut(s)	256, 753
BseXI	GCAGC	4 cut(s)	236, 817, 879, 1386
BseYI	CCCAGC	2 cut(s)	812, 1019
BshVI	ATCGAT	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	1203
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	2 cut(s)	807, 829
BslI	CCNNNNNNNGG	1 cut(s)	791
BsmAI	GTCTC	3 cut(s)	203, 912, 1238
BsmFI	GGGAC	2 cut(s)	807, 829
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	1203
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	190, 973
BspACI	CCGC	3 cut(s)	423, 896, 1177
BspCNI	CTCAG	3 cut(s)	664, 985, 1343
BspDI	ATCGAT	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	795
BspMI	ACCTGC	1 cut(s)	1264
BspOI	GCTAGC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	1011
BssAI	RCCGGY	1 cut(s)	685
BssECI	CCNNGG	5 cut(s)	15, 37, 225, 953, 954
BssMI	GATC	2 cut(s)	190, 973
Bst2UI	CCWGG	4 cut(s)	38, 326, 786, 955
Bst4CI	ACNGT	3 cut(s)	136, 439, 848
Bst6I	CTCTTC	3 cut(s)	604, 705, 1305
BstAPI	GCANNNNNTGC	2 cut(s)	839, 989
BstC8I	GCNNGC	4 cut(s)	79, 427, 687, 1174
BstDEI	CTNAG	6 cut(s)	309, 622, 651, 986, 993, 1330
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	118, 151, 870, 1383
BstKTI	GATC	2 cut(s)	193, 976
BstMAI	GTCTC	3 cut(s)	203, 912, 1238
BstMBI	GATC	2 cut(s)	190, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	682, 839, 989
BstNI	CCWGG	4 cut(s)	38, 326, 786, 955
BstSCI	CCNGG	4 cut(s)	36, 324, 784, 953
BstSFI	CTRYAG	2 cut(s)	215, 669
BstV1I	GCAGC	4 cut(s)	236, 817, 879, 1386
BstV2I	GAAGAC	4 cut(s)	717, 1068, 1281, 1290
BstX2I	RGATCY	1 cut(s)	973
BstYI	RGATCY	1 cut(s)	973
Bsu15I	ATCGAT	1 cut(s)	528
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	4 cut(s)	118, 151, 870, 1383
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	4 cut(s)	417, 609, 735, 1357
BveI	ACCTGC	1 cut(s)	1264
Cac8I	GCNNGC	4 cut(s)	79, 427, 687, 1174
CaiI	CAGNNNCTG	1 cut(s)	632
Cfr10I	RCCGGY	1 cut(s)	685
Cfr13I	GGNCC	3 cut(s)	12, 782, 794
ClaI	ATCGAT	1 cut(s)	528
Csp6I	GTAC	4 cut(s)	318, 655, 1123, 1168
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	4 cut(s)	85, 805, 1126, 1271
CviJI	RGCY	8 cut(s)	129, 159, 521, 689, 881, 1019, 1087, 1377
CviKI_1	RGCY	8 cut(s)	129, 159, 521, 689, 881, 1019, 1087, 1377
CviQI	GTAC	4 cut(s)	318, 655, 1123, 1168
DdeI	CTNAG	6 cut(s)	309, 622, 651, 986, 993, 1330
DpnI	GATC	2 cut(s)	192, 975
DpnII	GATC	2 cut(s)	190, 973
DraI	TTTAAA	2 cut(s)	30, 1075
DraIII	CACNNNGTG	1 cut(s)	989
DriI	GACNNNNNGTC	1 cut(s)	1205
Eam1104I	CTCTTC	3 cut(s)	604, 705, 1305
Eam1105I	GACNNNNNGTC	1 cut(s)	1205
EarI	CTCTTC	3 cut(s)	604, 705, 1305
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	1336
Eco47I	GGWCC	3 cut(s)	12, 782, 794
Eco57I	CTGAAG	3 cut(s)	585, 711, 962
Eco88I	CYCGRG	1 cut(s)	1203
EcoRI	GAATTC	2 cut(s)	220, 1024
EcoRII	CCWGG	4 cut(s)	36, 324, 784, 953
EcoRV	GATATC	1 cut(s)	1336
EcoT22I	ATGCAT	1 cut(s)	90
FaeI	CATG	4 cut(s)	88, 808, 1129, 1274
FaqI	GGGAC	2 cut(s)	807, 829
FatI	CATG	4 cut(s)	84, 804, 1125, 1270
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	6 cut(s)	250, 423, 831, 868, 1177, 1375
FokI	GGATG	4 cut(s)	125, 158, 857, 1370
Fsp4HI	GCNGC	6 cut(s)	250, 423, 831, 868, 1177, 1375
FspBI	CTAG	2 cut(s)	378, 426
GluI	GCNGC	6 cut(s)	250, 423, 831, 868, 1177, 1375
GsaI	CCCAGC	2 cut(s)	816, 1023
HapII	CCGG	1 cut(s)	686
Hin1II	CATG	4 cut(s)	88, 808, 1129, 1274
HincII	GTYRAC	1 cut(s)	1001
HindII	GTYRAC	1 cut(s)	1001
HinfI	GANTC	8 cut(s)	488, 629, 944, 997, 1048, 1206, 1246, 1325
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	4 cut(s)	433, 853, 1021, 1144
Hpy166II	GTNNAC	3 cut(s)	15, 1001, 1360
Hpy188I	TCNGA	5 cut(s)	226, 886, 1211, 1241, 1333
Hpy188III	TCNNGA	3 cut(s)	194, 852, 941
Hpy8I	GTNNAC	3 cut(s)	15, 1001, 1360
HpyAV	CCTTC	2 cut(s)	744, 765
HpyCH4III	ACNGT	3 cut(s)	136, 439, 848
HpyCH4V	TGCA	5 cut(s)	88, 359, 833, 1190, 1374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	682, 839, 989
HpyF3I	CTNAG	6 cut(s)	309, 622, 651, 986, 993, 1330
Hsp92II	CATG	4 cut(s)	88, 808, 1129, 1274
KroI	GCCGGC	1 cut(s)	685
KroNI	GCCGGC	1 cut(s)	687
Kzo9I	GATC	2 cut(s)	190, 973
LmnI	GCTCC	1 cut(s)	1016
Lsp1109I	GCAGC	4 cut(s)	236, 817, 879, 1386
LweI	GCATC	1 cut(s)	879
MaeI	CTAG	2 cut(s)	378, 426
MaeIII	GTNAC	3 cut(s)	136, 229, 439
MalI	GATC	2 cut(s)	192, 975
MboI	GATC	2 cut(s)	190, 973
MflI	RGATCY	1 cut(s)	973
MhlI	GDGCHC	1 cut(s)	172
MlyI	GAGTC	3 cut(s)	1006, 1215, 1240
Mph1103I	ATGCAT	1 cut(s)	90
MroNI	GCCGGC	1 cut(s)	685
MroXI	GAANNNNTTC	2 cut(s)	975, 1364
MseI	TTAA	3 cut(s)	29, 963, 1074
MslI	CAYNNNNRTG	2 cut(s)	875, 1350
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	4 cut(s)	38, 326, 786, 955
MvaI	CCWGG	4 cut(s)	38, 326, 786, 955
MwoI	GCNNNNNNNGC	3 cut(s)	682, 839, 989
NaeI	GCCGGC	1 cut(s)	687
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	2 cut(s)	190, 973
NgoMIV	GCCGGC	1 cut(s)	685
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	4 cut(s)	88, 808, 1129, 1274
NlaIV	GGNNCC	1 cut(s)	795
NmuCI	GTSAC	3 cut(s)	136, 229, 439
NsiI	ATGCAT	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	1203
PasI	CCCWGGG	1 cut(s)	954
PcsI	WCGNNNNNNNCGW	1 cut(s)	1284
PdiI	GCCGGC	1 cut(s)	687
PdmI	GAANNNNTTC	2 cut(s)	975, 1364
PfeI	GAWTC	5 cut(s)	488, 629, 944, 1048, 1325
PkrI	GCNGC	6 cut(s)	251, 424, 832, 869, 1178, 1376
PleI	GAGTC	3 cut(s)	1005, 1214, 1240
PpsI	GAGTC	3 cut(s)	1005, 1214, 1240
Psp6I	CCWGG	4 cut(s)	36, 324, 784, 953
PspFI	CCCAGC	2 cut(s)	812, 1019
PspGI	CCWGG	4 cut(s)	36, 324, 784, 953
PspN4I	GGNNCC	1 cut(s)	795
PspPI	GGNCC	3 cut(s)	12, 782, 794
PspXI	VCTCGAGB	1 cut(s)	1203
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	973
RsaI	GTAC	4 cut(s)	319, 656, 1124, 1169
RsaNI	GTAC	4 cut(s)	318, 655, 1123, 1168
RseI	CAYNNNNRTG	2 cut(s)	875, 1350
SaqAI	TTAA	3 cut(s)	29, 963, 1074
SatI	GCNGC	6 cut(s)	250, 423, 831, 868, 1177, 1375
Sau3AI	GATC	2 cut(s)	190, 973
Sau96I	GGNCC	3 cut(s)	12, 782, 794
SchI	GAGTC	3 cut(s)	1006, 1215, 1240
ScrFI	CCNGG	4 cut(s)	38, 326, 786, 955
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	1 cut(s)	879
SfcI	CTRYAG	2 cut(s)	215, 669
Sfr274I	CTCGAG	1 cut(s)	1203
SinI	GGWCC	3 cut(s)	12, 782, 794
SlaI	CTCGAG	1 cut(s)	1203
SmiMI	CAYNNNNRTG	2 cut(s)	875, 1350
SmlI	CTYRAG	1 cut(s)	1203
SmoI	CTYRAG	1 cut(s)	1203
SsiI	CCGC	3 cut(s)	423, 896, 1177
SspMI	CTAG	2 cut(s)	378, 426
StyD4I	CCNGG	4 cut(s)	36, 324, 784, 953
TaaI	ACNGT	3 cut(s)	136, 439, 848
TaqI	TCGA	2 cut(s)	528, 1204
TauI	GCSGC	2 cut(s)	425, 1179
TfiI	GAWTC	5 cut(s)	488, 629, 944, 1048, 1325
Tru1I	TTAA	3 cut(s)	29, 963, 1074
Tru9I	TTAA	3 cut(s)	29, 963, 1074
TscAI	CASTG	4 cut(s)	424, 609, 735, 1357
TseFI	GTSAC	3 cut(s)	136, 229, 439
TseI	GCWGC	4 cut(s)	249, 830, 867, 1374
Tsp45I	GTSAC	3 cut(s)	136, 229, 439
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	4 cut(s)	424, 609, 735, 1357
VpaK11BI	GGWCC	3 cut(s)	12, 782, 794
XapI	RAATTY	8 cut(s)	150, 174, 220, 855, 930, 1024, 1069, 1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XhoI	CTCGAG	1 cut(s)	1203
XmnI	GAANNNNTTC	2 cut(s)	975, 1364
XspI	CTAG	2 cut(s)	378, 426
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.