Rorug03G0358400

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005795
Physical Location & Seq
Reverse (-)
44641987 .. 44642592
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0358400.1

Sequence Viewer

Length: 468 bp
ATGTGTCTGAGTGCTCGGCTGGGGCTTCCTGATGGCGATCGGGGAGATCTCAATCAACCACACAAACCCATCTTCGTCAAGGGCACATGGTTCGAGTCCCGCTTCGACCTCTCCATCACCGACGGCCTCAACGCCTGGGTCTGCCATGCCTCTGAAGACGCGGTTAGAGACCGAGCCACCCAGTGGGACCAGCCGGTATATGAGTACGTCTCATTAGCCGAGCGCTATATAGGGTTTCAGCACTCTGATTCTGTCTACGGATTCACTGACGCTGGCAATGGCCACAGAAGGTTGTCATGGACTTTTGAGAAGGAAGGGACGAAGCTAGAATGGCGGTGGAAGTGTCAACCATCCCCTAACAGTAAGGAAACAACAGCTACAGTGTTGGATTTTCTGATGGATGCAAATGTTGGGCCAAGTGTAAGTGTTTGCATAGTCATTGTTGAGCTCATGGTATTCATTTCATAA

Protein Analysis

155

Amino Acids

17.56

Weight (kDa)

5.13

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XRCC4 PF06632 23 - 118 4.7e-27 XRCC4 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 183
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 161
AciI CCGC 3 cut(s) 100, 161, 334
AcoI YGGCCR 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 1 cut(s) 206
AfeI AGCGCT 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 183
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 3 cut(s) 325, 377, 448
AluI AGCT 3 cut(s) 325, 377, 448
Alw21I GWGCWC 2 cut(s) 16, 450
Alw26I GTCTC 2 cut(s) 162, 214
Aor51HI AGCGCT 1 cut(s) 224
AoxI GGCC 3 cut(s) 124, 280, 413
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 187, 413
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 282
BanII GRGCYC 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 2 cut(s) 16, 450
BccI CCATC 5 cut(s) 26, 77, 122, 358, 391
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 162, 214
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 226
BglII AGATCT 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 187, 413
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 136
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BsaBI GATNNNNATC 2 cut(s) 36, 51
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 2 cut(s) 36, 51
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 350, 406
BseJI GATNNNNATC 2 cut(s) 36, 51
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 3 cut(s) 126, 282, 415
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 16, 450
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 3 cut(s) 82, 200, 331
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 2 cut(s) 162, 214
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 3 cut(s) 82, 200, 331
BsnI GGCC 3 cut(s) 126, 282, 415
Bso31I GGTCTC 1 cut(s) 162
Bsp1286I GDGCHC 3 cut(s) 16, 86, 450
Bsp143I GATC 2 cut(s) 37, 46
BspACI CCGC 3 cut(s) 100, 161, 334
BspANI GGCC 3 cut(s) 126, 282, 415
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 37, 46
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 362, 382
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 2 cut(s) 350, 406
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 2 cut(s) 40, 49
BstMAI GTCTC 2 cut(s) 162, 214
BstMBI GATC 2 cut(s) 37, 46
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 3 cut(s) 126, 282, 415
BtsCI GGATG 2 cut(s) 350, 406
BtsIMutI CAGTG 3 cut(s) 188, 264, 387
Cac8I GCNNGC 1 cut(s) 274
CfoI GCGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 187, 413
CseI GACGC 2 cut(s) 167, 278
Csp6I GTAC 1 cut(s) 205
CviAII CATG 4 cut(s) 87, 146, 297, 451
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 39, 48
DpnII GATC 2 cut(s) 37, 46
DraIII CACNNNGTG 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 4 cut(s) 90, 149, 300, 454
FaqI GGGAC 3 cut(s) 82, 200, 331
FatI CATG 4 cut(s) 86, 145, 296, 450
FauI CCCGC 1 cut(s) 107
FblI GTMKAC 1 cut(s) 255
FokI GGATG 2 cut(s) 337, 413
FriOI GRGCYC 1 cut(s) 450
FspBI CTAG 1 cut(s) 326
GlaI GCGC 1 cut(s) 224
GsaI CCCAGC 1 cut(s) 23
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 3 cut(s) 126, 282, 415
HapII CCGG 1 cut(s) 194
HgaI GACGC 2 cut(s) 167, 278
HhaI GCGC 1 cut(s) 225
Hin1II CATG 4 cut(s) 90, 149, 300, 454
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 1 cut(s) 347
HindII GTYRAC 1 cut(s) 347
HinfI GANTC 3 cut(s) 95, 248, 261
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 256, 347
Hpy188I TCNGA 4 cut(s) 9, 154, 247, 396
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 2 cut(s) 256, 347
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 282, 304, 308
HpyCH4III ACNGT 2 cut(s) 362, 382
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 404, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 4 cut(s) 90, 149, 300, 454
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 37, 46
LpnPI CCDG 8 cut(s) 5, 42, 121, 148, 194, 203, 207, 258
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 207
MalI GATC 2 cut(s) 39, 48
MboI GATC 2 cut(s) 37, 46
MboII GAAGA 2 cut(s) 64, 167
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 3 cut(s) 16, 86, 450
MlsI TGGCCA 1 cut(s) 282
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 3 cut(s) 119, 137, 160
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 282
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 2 cut(s) 37, 46
NlaIII CATG 4 cut(s) 90, 149, 300, 454
NlaIV GGNNCC 1 cut(s) 188
NmeAIII GCCGAG 1 cut(s) 244
PfeI GAWTC 2 cut(s) 248, 261
PflMI CCANNNNNTGG 1 cut(s) 183
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 2 cut(s) 187, 413
PsuI RGATCY 1 cut(s) 46
PvuI CGATCG 1 cut(s) 40
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 1 cut(s) 450
Sau3AI GATC 2 cut(s) 37, 46
Sau96I GGNCC 2 cut(s) 187, 413
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 3 cut(s) 16, 86, 450
SetI ASST 6 cut(s) 111, 210, 293, 327, 379, 450
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 187
SsiI CCGC 3 cut(s) 100, 161, 334
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 362, 382
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 93, 105
TaqII GACCGA 1 cut(s) 186
TfiI GAWTC 2 cut(s) 248, 261
TscAI CASTG 3 cut(s) 188, 271, 387
TspDTI ATGAA 2 cut(s) 448, 453
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 3 cut(s) 188, 271, 387
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.