Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Forward (+)

55723116 .. 55726878

Gene Structure 3763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGTTGCAGCAGGTGATTCAGCAGCAGCAAGAACAGGATGAAATTTCAAGCCAGATTAGTGCTCAAATTTTCGAATTCTGTGATCCTGAACTATTCCAAGAGACCATGCAGAATTCTGAGGTCACTTCTTCTTCAAATTGCTGCTATGATGAAAACTCCTCTTATGCAACAAATCTTTCACTGCCCCAGGATTTAGAAACTAAATTCAGTACCTACCAGGATAACAATGGCAACGCTAACACAACCATTGCTCCAACCCCCACAACAACTAGTACCACCACCACCGCCACCACTAGCAGCACAAACACCACCACCGCCAGCACCAACACCACCAGTATCAACGCCACTACTGCCAGCACCAACACAACCACCACCACCAACAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATCGACAATGACATCTCAGTCTCCATCGATTTTTCCCCATCCCCTCCCTTTTCCGTACCTCCATTTCTCATGACCCAACAAGACCAATTTGATTTCACTTCAGTGCCAACTCAAATCCCACTAGCAGATTCTGTTGTTGAGGGATTTTCACAGTATCCTGCTGACCCTGTACCGCCTCTCATGTCGGCTCCATTGCCATCAGTTTTTGAAGAGGATTGCTTGTCCTCGGTGCCTTCGTATGTGCCTTTGAACCCCTCTTCTCCTTCTTGTTCTTTTCTTGGTCCTACCATGGGAGCATACATGCCTGCTGGGACTATGAATGCTGCAGCATTATCTGCCGACAGCACTGGAATTTTCACCAGCAGTATTCTCATGGCTTCTGAACTGCAACCACAAGATTTGGAATACCAAGGAGATAATGGCGGAATTTTCTGTCCAGAATCATTACCGAGGGGTTTTAACCCTGAAGACCTTCAGATGCTTGGTGCTGAGAGCCAACAACTGGTGAGTGGGGCTGGGAACTCTACTTCTTTACCAACTGAGATTCCCATGGCAGAAGACCCAAATTTTAAAGTAGGGAAGCTATCTGTTGAGGAAAGGAAAGAGAAGATACATAGGTACATGAAGAAAAGGAATGAAAGGAATTTCACAAAGAAAATCAAGTATGCCTGCCGCAAAACTCTTGCGGACAGCAGACCTCGAGTTAGAGGAAGATTTGCGAAGAATGATGATTTTGGAGAGAATCATAGACCTTCTGGTAGCAACCATGAAGACGATGAAGACGATGAAGTAGTTGTGAAAGAGGAAGAGGATATGGTTGATTCCTCGGACATCTTCGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAGCTATCCCATCCAATCCTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

442

Amino Acids

48.19

Weight (kDa)

4.23

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	343 - 385	1e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	658
AccB7I	CCANNNNNTGG	1 cut(s)	931
AciI	CCGC	6 cut(s)	285, 315, 602, 852, 1102, 1115
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	9 cut(s)	42, 66, 74, 112, 203, 780, 855, 994, 1072
AcuI	CTGAAG	3 cut(s)	513, 887, 915
AfaI	GTAC	5 cut(s)	211, 274, 486, 600, 1049
AfiI	CCNNNNNNNGG	2 cut(s)	719, 931
AgsI	TTSAA	5 cut(s)	48, 135, 638, 679, 1294
AhlI	ACTAGT	1 cut(s)	269
AjnI	CCWGG	3 cut(s)	186, 216, 1316
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	2 cut(s)	1012, 1302
AluI	AGCT	2 cut(s)	1012, 1302
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	95, 454
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	1128
ApeKI	GCWGC	8 cut(s)	7, 22, 25, 141, 297, 752, 755, 1299
ApoI	RAATTY	9 cut(s)	42, 66, 74, 112, 203, 780, 855, 994, 1072
Asp700I	GAANNNNTTC	2 cut(s)	900, 1289
AspS9I	GGNCC	1 cut(s)	710
AsuHPI	GGTGA	3 cut(s)	25, 778, 946
AsuII	TTCGAA	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	1128
AvaII	GGWCC	1 cut(s)	710
BaeI	ACNNNNGTAYC	2 cut(s)	1031, 1064
BanI	GGYRCC	1 cut(s)	658
BbsI	GAAGAC	4 cut(s)	903, 993, 1206, 1215
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	8 cut(s)	19, 34, 37, 128, 309, 739, 767, 1311
BccI	CCATC	4 cut(s)	461, 475, 634, 1316
BciT130I	CCWGG	3 cut(s)	188, 218, 1318
BciVI	GTATCC	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	95, 454
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	3 cut(s)	270, 294, 551
BfmI	CTRYAG	1 cut(s)	753
BfuI	GTATCC	1 cut(s)	594
BisI	GCNGC	9 cut(s)	8, 23, 26, 142, 298, 753, 756, 1102, 1300
BlsI	GCNGC	9 cut(s)	9, 24, 27, 143, 299, 754, 757, 1103, 1301
Bme1390I	CCNGG	3 cut(s)	188, 218, 1318
Bme18I	GGWCC	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	1128
BmgT120I	GGNCC	1 cut(s)	710
BmiI	GGNNCC	2 cut(s)	618, 660
BmrFI	CCNGG	3 cut(s)	188, 218, 1318
BmsI	GCATC	1 cut(s)	897
BpiI	GAAGAC	4 cut(s)	903, 993, 1206, 1215
Bpu14I	TTCGAA	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	7 cut(s)	186, 654, 717, 838, 878, 978, 1254
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	719, 931
Bse1I	ACTGG	3 cut(s)	333, 781, 936
Bse3DI	GCAATG	2 cut(s)	246, 620
BseBI	CCWGG	3 cut(s)	188, 218, 1318
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	7 cut(s)	186, 654, 717, 838, 878, 978, 1254
BseGI	GGATG	3 cut(s)	43, 467, 1308
BseLI	CCNNNNNNNGG	2 cut(s)	719, 931
BseMI	GCAATG	2 cut(s)	246, 620
BseMII	CTCAG	4 cut(s)	108, 459, 909, 960
BseNI	ACTGG	3 cut(s)	333, 781, 936
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	8 cut(s)	19, 34, 37, 128, 309, 739, 767, 1311
BseYI	CCCAGC	2 cut(s)	737, 944
BshNI	GGYRCC	1 cut(s)	658
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	1128
BslFI	GGGAC	1 cut(s)	754
BslI	CCNNNNNNNGG	2 cut(s)	719, 931
BsmAI	GTCTC	2 cut(s)	95, 454
BsmFI	GGGAC	1 cut(s)	754
BsmI	GAATGC	1 cut(s)	754
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	1128
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	82
Bsp19I	CCATGG	2 cut(s)	717, 978
BspACI	CCGC	6 cut(s)	285, 315, 602, 852, 1102, 1115
BspCNI	CTCAG	4 cut(s)	109, 458, 910, 961
BspDI	ATCGAT	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	618, 660
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	246, 620
BsrI	ACTGG	3 cut(s)	333, 781, 936
BssECI	CCNNGG	7 cut(s)	186, 654, 717, 838, 878, 978, 1254
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	3 cut(s)	717, 838, 978
Bst2UI	CCWGG	3 cut(s)	188, 218, 1318
Bst4CI	ACNGT	1 cut(s)	582
Bst6I	CTCTTC	3 cut(s)	633, 691, 1230
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstBI	TTCGAA	1 cut(s)	72
BstC8I	GCNNGC	4 cut(s)	319, 355, 735, 1099
BstDEI	CTNAG	4 cut(s)	117, 445, 918, 969
BstDSI	CCRYGG	2 cut(s)	717, 978
BstF5I	GGATG	3 cut(s)	43, 467, 1308
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	95, 454
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 764
BstNI	CCWGG	3 cut(s)	188, 218, 1318
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	3 cut(s)	186, 216, 1316
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	8 cut(s)	19, 34, 37, 128, 309, 739, 767, 1311
BstV2I	GAAGAC	4 cut(s)	903, 993, 1206, 1215
Bsu15I	ATCGAT	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	594
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	2 cut(s)	717, 978
BtsCI	GGATG	3 cut(s)	43, 467, 1308
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	4 cut(s)	179, 537, 774, 1282
Cac8I	GCNNGC	4 cut(s)	319, 355, 735, 1099
CaiI	CAGNNNCTG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	710
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	5 cut(s)	210, 273, 485, 599, 1048
CspCI	CAANNNNNGTGG	4 cut(s)	373, 408, 810, 845
CviAII	CATG	9 cut(s)	106, 499, 610, 718, 730, 802, 979, 1051, 1196
CviJI	RGCY	7 cut(s)	51, 617, 806, 924, 944, 1012, 1302
CviKI_1	RGCY	7 cut(s)	51, 617, 806, 924, 944, 1012, 1302
CviQI	GTAC	5 cut(s)	210, 273, 485, 599, 1048
DdeI	CTNAG	4 cut(s)	117, 445, 918, 969
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DraI	TTTAAA	1 cut(s)	1000
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
Eam1104I	CTCTTC	3 cut(s)	633, 691, 1230
EarI	CTCTTC	3 cut(s)	633, 691, 1230
EciI	GGCGGA	1 cut(s)	867
Eco130I	CCWWGG	3 cut(s)	717, 838, 978
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	3 cut(s)	513, 887, 915
Eco88I	CYCGRG	1 cut(s)	1128
EcoRI	GAATTC	2 cut(s)	74, 112
EcoRII	CCWGG	3 cut(s)	186, 216, 1316
EcoT14I	CCWWGG	3 cut(s)	717, 838, 978
ErhI	CCWWGG	3 cut(s)	717, 838, 978
FaeI	CATG	9 cut(s)	109, 502, 613, 721, 733, 805, 982, 1054, 1199
FaqI	GGGAC	1 cut(s)	754
FatI	CATG	9 cut(s)	105, 498, 609, 717, 729, 801, 978, 1050, 1195
Fnu4HI	GCNGC	9 cut(s)	8, 23, 26, 142, 298, 753, 756, 1102, 1300
FokI	GGATG	3 cut(s)	50, 454, 1295
Fsp4HI	GCNGC	9 cut(s)	8, 23, 26, 142, 298, 753, 756, 1102, 1300
FspBI	CTAG	3 cut(s)	270, 294, 551
GluI	GCNGC	9 cut(s)	8, 23, 26, 142, 298, 753, 756, 1102, 1300
GsaI	CCCAGC	2 cut(s)	741, 948
Hin1II	CATG	9 cut(s)	109, 502, 613, 721, 733, 805, 982, 1054, 1199
HinfI	GANTC	7 cut(s)	16, 416, 557, 869, 973, 1171, 1250
HphI	GGTGA	3 cut(s)	25, 778, 946
Hpy166II	GTNNAC	1 cut(s)	1285
Hpy188I	TCNGA	4 cut(s)	118, 811, 906, 1258
Hpy188III	TCNNGA	3 cut(s)	86, 499, 866
Hpy8I	GTNNAC	1 cut(s)	1285
HpyAV	CCTTC	5 cut(s)	672, 702, 911, 1191, 1300
HpyCH4III	ACNGT	1 cut(s)	582
HpyCH4V	TGCA	6 cut(s)	7, 109, 167, 755, 817, 1299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 764
HpyF3I	CTNAG	4 cut(s)	117, 445, 918, 969
Hsp92II	CATG	9 cut(s)	109, 502, 613, 721, 733, 805, 982, 1054, 1199
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	3 cut(s)	256, 622, 722
Lsp1109I	GCAGC	8 cut(s)	19, 34, 37, 128, 309, 739, 767, 1311
LweI	GCATC	1 cut(s)	897
MaeI	CTAG	3 cut(s)	270, 294, 551
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	278
MroXI	GAANNNNTTC	2 cut(s)	900, 1289
MseI	TTAA	2 cut(s)	888, 999
MslI	CAYNNNNRTG	2 cut(s)	530, 1275
MspR9I	CCNGG	3 cut(s)	188, 218, 1318
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	3 cut(s)	188, 218, 1318
MwoI	GCNNNNNNNGC	2 cut(s)	350, 764
NcoI	CCATGG	2 cut(s)	717, 978
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	9 cut(s)	109, 502, 613, 721, 733, 805, 982, 1054, 1199
NlaIV	GGNNCC	2 cut(s)	618, 660
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	733
NspV	TTCGAA	1 cut(s)	72
OliI	CACNNNNGTG	1 cut(s)	530
PaeR7I	CTCGAG	1 cut(s)	1128
PagI	TCATGA	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	2 cut(s)	662, 1209
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	2 cut(s)	900, 1289
PfeI	GAWTC	7 cut(s)	16, 416, 557, 869, 973, 1171, 1250
PflMI	CCANNNNNTGG	1 cut(s)	931
PfoI	TCCNGGA	1 cut(s)	1316
PkrI	GCNGC	9 cut(s)	9, 24, 27, 143, 299, 754, 757, 1103, 1301
Psp6I	CCWGG	3 cut(s)	186, 216, 1316
PspFI	CCCAGC	2 cut(s)	737, 944
PspGI	CCWGG	3 cut(s)	186, 216, 1316
PspN4I	GGNNCC	2 cut(s)	618, 660
PspPI	GGNCC	1 cut(s)	710
PspXI	VCTCGAGB	1 cut(s)	1128
PstI	CTGCAG	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	560
RsaI	GTAC	5 cut(s)	211, 274, 486, 600, 1049
RsaNI	GTAC	5 cut(s)	210, 273, 485, 599, 1048
RseI	CAYNNNNRTG	2 cut(s)	530, 1275
SaqAI	TTAA	2 cut(s)	888, 999
SatI	GCNGC	9 cut(s)	8, 23, 26, 142, 298, 753, 756, 1102, 1300
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	710
ScrFI	CCNGG	3 cut(s)	188, 218, 1318
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	897
SfcI	CTRYAG	1 cut(s)	753
Sfr274I	CTCGAG	1 cut(s)	1128
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	710
SlaI	CTCGAG	1 cut(s)	1128
SmiMI	CAYNNNNRTG	2 cut(s)	530, 1275
SmlI	CTYRAG	1 cut(s)	1128
SmoI	CTYRAG	1 cut(s)	1128
SpeI	ACTAGT	1 cut(s)	269
SsiI	CCGC	6 cut(s)	285, 315, 602, 852, 1102, 1115
SspMI	CTAG	3 cut(s)	270, 294, 551
StyD4I	CCNGG	3 cut(s)	186, 216, 1316
StyI	CCWWGG	3 cut(s)	717, 838, 978
TaaI	ACNGT	1 cut(s)	582
TaqI	TCGA	4 cut(s)	72, 432, 456, 1129
TauI	GCSGC	1 cut(s)	1104
TfiI	GAWTC	7 cut(s)	16, 416, 557, 869, 973, 1171, 1250
Tru1I	TTAA	2 cut(s)	888, 999
Tru9I	TTAA	2 cut(s)	888, 999
TscAI	CASTG	4 cut(s)	186, 537, 781, 1282
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	8 cut(s)	7, 22, 25, 141, 297, 752, 755, 1299
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	8 cut(s)	54, 165, 761, 1067, 1080, 1212, 1221, 1230
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	4 cut(s)	186, 537, 781, 1282
Van91I	CCANNNNNTGG	1 cut(s)	931
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	9 cut(s)	42, 66, 74, 112, 203, 780, 855, 994, 1072
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 845
XhoI	CTCGAG	1 cut(s)	1128
XmnI	GAANNNNTTC	2 cut(s)	900, 1289
XspI	CTAG	3 cut(s)	270, 294, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.