Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Forward (+)

14133810 .. 14137175

Gene Structure 3366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33350.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTTGCAAGACATGATCTCGTCTCACTCTCACGATCAGCTTTCCATCGATGATATCACGAGCCCTCTTAGTGCTCAGATCTTCGATTTCTGCGATCCACAACTCTTTCAAGAAACCTTTAATCAATCCTCTGAAGTCACCTCTACTTCAAACATTCTTGAGAAATCCGGAAGCTTCCATTCCAACACTAACACCACCACAACAACTGAGAACAGTAACAACAACAACAACAACAAGAACACAAACCTTCAAGACGATGAAGATGACAACAACAACACGGATCTGTCCATAATCTTTGATTCACAAGAAGATTTCGAAAACGATATAACGGCTTCAATCGATTTCTCATCATCTTCACTGCAATATCCAGTCATCGATCATCTCCTCACGGCAATAAGCCAAGACCAGTTTGATTTCTCATCAGGTCTCCAAGTTATTCATCAGCCTCCTAACATTTCATACTCTGGAGATCCTCTGTCTCTATCGGCGATTTCCTCTCTAGCTCCTCCTCCCTTACAATCAGGGGTTTTCGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGGTTTGAACCCTTCTTGCTCTTTCTTCCGTTCGTCCGGTTTACCGGCGTATATGAGTACCGGTTTATTATCTGCTGAAAGTAATCTCGGTTATCTTCCCGGGAATATTCATGTGGGATCAGAAATCAATAAGCCACATGATCCACTGATGGACTTTCAAGCTGATAATGGTGGTTTTTTTTGTCCGGATTCCATCAAACGTATGTTTAATCCAGAAGATCTCCAGAAGGCACTTGGTGGTGGCGCCGAGAACCAGAGCCACTTGGTGACACCTCAAGCTCATCCAGCATTAGGACCGGTCGATATAAACGGTTTAGAAGACTCAACGTTGAACAAAGTTGGAAAACTCTCCCCTGAGCAAAGGAAAGAGAAGATTCGTAGGTACATGAAGAAGAGGAACGAAAGGAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAAAACATTGGCAGATAGTCGACCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAGCCAAATAGACAAGCTTTTTCAAGCCATCATGATGATGAAGATGAAGACGATATGGGAGTGAAGGATGAGGAACAATTGGTAGATTCTTCAGACATTTTTGCACACATTAGTGGAGCAAATTCCTTCAAGTGCAACTACCCAATCCAATCTTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

410

Amino Acids

45.48

Weight (kDa)

4.61

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	319 - 361	1.5e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	812
AccI	GTMKAC	1 cut(s)	1027
AccIII	TCCGGA	2 cut(s)	167, 754
AclI	AACGTT	1 cut(s)	896
AclWI	GGATC	5 cut(s)	89, 288, 464, 694, 704
AcsI	RAATTY	3 cut(s)	976, 1064, 1192
AcuI	CTGAAG	3 cut(s)	153, 534, 1146
AcyI	GRCGYC	1 cut(s)	813
AdeI	CACNNNGTG	2 cut(s)	806, 835
AfaI	GTAC	2 cut(s)	628, 953
AfiI	CCNNNNNNNGG	1 cut(s)	860
AgeI	ACCGGT	2 cut(s)	629, 865
AleI	CACNNNNGTG	1 cut(s)	1182
AluBI	AGCT	6 cut(s)	40, 174, 503, 731, 848, 1088
AluI	AGCT	6 cut(s)	40, 174, 503, 731, 848, 1088
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	3 cut(s)	27, 431, 483
AlwI	GGATC	5 cut(s)	89, 288, 464, 694, 704
Ama87I	CYCGRG	1 cut(s)	668
Aor13HI	TCCGGA	2 cut(s)	167, 754
ApoI	RAATTY	3 cut(s)	976, 1064, 1192
AsiGI	ACCGGT	2 cut(s)	629, 865
AspLEI	GCGC	1 cut(s)	815
AspS9I	GGNCC	1 cut(s)	863
AsuC2I	CCSGG	2 cut(s)	669, 670
AsuHPI	GGTGA	3 cut(s)	130, 847, 1082
AsuII	TTCGAA	2 cut(s)	315, 531
AvaI	CYCGRG	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	863
BanI	GGYRCC	1 cut(s)	812
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	2 cut(s)	894, 1125
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	4 cut(s)	53, 712, 770, 1107
BceAI	ACGGC	2 cut(s)	345, 405
BcnI	CCSGG	2 cut(s)	669, 670
BcoDI	GTCTC	3 cut(s)	27, 431, 483
BfaI	CTAG	1 cut(s)	500
BfoI	RGCGCY	1 cut(s)	816
BglII	AGATCT	2 cut(s)	78, 787
Bme1390I	CCNGG	2 cut(s)	669, 670
Bme18I	GGWCC	1 cut(s)	863
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	863
BmiI	GGNNCC	1 cut(s)	814
BmrFI	CCNGG	2 cut(s)	669, 670
BpiI	GAAGAC	2 cut(s)	894, 1125
BpmI	CTGGAG	2 cut(s)	486, 776
Bpu10I	CCTNAGC	1 cut(s)	924
Bpu14I	TTCGAA	2 cut(s)	315, 531
BpuEI	CTTGAG	2 cut(s)	179, 828
BpuMI	CCSGG	2 cut(s)	669, 670
Bsa29I	ATCGAT	3 cut(s)	48, 339, 375
BsaHI	GRCGYC	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	668
BsaWI	WCCGGW	5 cut(s)	167, 605, 629, 754, 865
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse118I	RCCGGY	3 cut(s)	613, 629, 865
Bse1I	ACTGG	2 cut(s)	368, 406
BseAI	TCCGGA	2 cut(s)	167, 754
BseCI	ATCGAT	3 cut(s)	48, 339, 375
BseDI	CCNNGG	1 cut(s)	668
BseGI	GGATG	2 cut(s)	850, 1144
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMII	CTCAG	3 cut(s)	89, 198, 915
BseNI	ACTGG	2 cut(s)	368, 406
BseRI	GAGGAG	3 cut(s)	374, 495, 498
Bsh1285I	CGRYCG	1 cut(s)	870
BshNI	GGYRCC	1 cut(s)	812
BshTI	ACCGGT	2 cut(s)	629, 865
BshVI	ATCGAT	3 cut(s)	48, 339, 375
BsiEI	CGRYCG	1 cut(s)	870
BsiHKAI	GWGCWC	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	7 cut(s)	168, 606, 614, 630, 669, 755, 866
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmAI	GTCTC	3 cut(s)	27, 431, 483
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	668
Bsp119I	TTCGAA	2 cut(s)	315, 531
Bsp1286I	GDGCHC	2 cut(s)	65, 76
Bsp13I	TCCGGA	2 cut(s)	167, 754
BspCNI	CTCAG	3 cut(s)	88, 199, 916
BspDI	ATCGAT	3 cut(s)	48, 339, 375
BspEI	TCCGGA	2 cut(s)	167, 754
BspHI	TCATGA	1 cut(s)	1102
BspLI	GGNNCC	1 cut(s)	814
BspPI	GGATC	5 cut(s)	89, 288, 464, 694, 704
BspT104I	TTCGAA	2 cut(s)	315, 531
BspT107I	GGYRCC	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	431
BsrFI	RCCGGY	3 cut(s)	613, 629, 865
BsrI	ACTGG	2 cut(s)	368, 406
BssAI	RCCGGY	3 cut(s)	613, 629, 865
BssECI	CCNNGG	1 cut(s)	668
BssNI	GRCGYC	1 cut(s)	813
BssSI	CACGAG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	215, 881
Bst6I	CTCTTC	1 cut(s)	956
BstACI	GRCGYC	1 cut(s)	813
BstBI	TTCGAA	2 cut(s)	315, 531
BstDEI	CTNAG	4 cut(s)	68, 75, 207, 924
BstF5I	GGATG	2 cut(s)	850, 1144
BstH2I	RGCGCY	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	815
BstMAI	GTCTC	3 cut(s)	27, 431, 483
BstMCI	CGRYCG	1 cut(s)	870
BstMWI	GCNNNNNNNGC	1 cut(s)	854
BstSCI	CCNGG	2 cut(s)	667, 668
BstV2I	GAAGAC	2 cut(s)	894, 1125
BstX2I	RGATCY	4 cut(s)	78, 280, 469, 787
BstYI	RGATCY	4 cut(s)	78, 280, 469, 787
Bsu15I	ATCGAT	3 cut(s)	48, 339, 375
BsuTUI	ATCGAT	3 cut(s)	48, 339, 375
BtsCI	GGATG	2 cut(s)	850, 1144
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	356, 713
CciI	TCATGA	1 cut(s)	1102
CfoI	GCGC	1 cut(s)	815
Cfr10I	RCCGGY	3 cut(s)	613, 629, 865
Cfr13I	GGNCC	1 cut(s)	863
Cfr9I	CCCGGG	1 cut(s)	668
ClaI	ATCGAT	3 cut(s)	48, 339, 375
Csp6I	GTAC	2 cut(s)	627, 952
CspAI	ACCGGT	2 cut(s)	629, 865
CviAII	CATG	5 cut(s)	13, 680, 707, 955, 1103
CviQI	GTAC	2 cut(s)	627, 952
DdeI	CTNAG	4 cut(s)	68, 75, 207, 924
DinI	GGCGCC	1 cut(s)	814
DraIII	CACNNNGTG	2 cut(s)	806, 835
Eam1104I	CTCTTC	1 cut(s)	956
EarI	CTCTTC	1 cut(s)	956
Eco24I	GRGCYC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	863
Eco57I	CTGAAG	3 cut(s)	153, 534, 1146
Eco88I	CYCGRG	1 cut(s)	668
EcoRV	GATATC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	65
EgeI	GGCGCC	1 cut(s)	814
EheI	GGCGCC	1 cut(s)	814
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	5 cut(s)	16, 683, 710, 958, 1106
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	5 cut(s)	12, 679, 706, 954, 1102
FblI	GTMKAC	1 cut(s)	1027
FokI	GGATG	2 cut(s)	837, 1151
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	814
GsuI	CTGGAG	2 cut(s)	486, 776
HaeII	RGCGCY	1 cut(s)	816
HapII	CCGG	7 cut(s)	168, 606, 614, 630, 669, 755, 866
HhaI	GCGC	1 cut(s)	815
Hin1I	GRCGYC	1 cut(s)	813
Hin1II	CATG	5 cut(s)	16, 683, 710, 958, 1106
Hin6I	GCGC	1 cut(s)	813
HinP1I	GCGC	1 cut(s)	813
HincII	GTYRAC	1 cut(s)	1028
HindII	GTYRAC	1 cut(s)	1028
HindIII	AAGCTT	2 cut(s)	172, 1086
HinfI	GANTC	5 cut(s)	299, 758, 890, 943, 1157
HpaII	CCGG	7 cut(s)	168, 606, 614, 630, 669, 755, 866
HphI	GGTGA	3 cut(s)	130, 847, 1082
Hpy166II	GTNNAC	2 cut(s)	611, 1028
Hpy188I	TCNGA	4 cut(s)	78, 133, 691, 1165
Hpy8I	GTNNAC	2 cut(s)	611, 1028
HpyAV	CCTTC	5 cut(s)	257, 591, 790, 1129, 1207
HpyCH4III	ACNGT	2 cut(s)	215, 881
HpyCH4IV	ACGT	2 cut(s)	769, 896
HpyCH4V	TGCA	5 cut(s)	7, 361, 1052, 1175, 1206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	854
HpyF3I	CTNAG	4 cut(s)	68, 75, 207, 924
HpySE526I	ACGT	2 cut(s)	769, 896
Hsp92I	GRCGYC	1 cut(s)	813
Hsp92II	CATG	5 cut(s)	16, 683, 710, 958, 1106
HspAI	GCGC	1 cut(s)	813
KasI	GGCGCC	1 cut(s)	812
Kpn2I	TCCGGA	2 cut(s)	167, 754
LmnI	GCTCC	2 cut(s)	508, 1187
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	2 cut(s)	769, 896
MaeIII	GTNAC	4 cut(s)	136, 215, 560, 835
MfeI	CAATTG	1 cut(s)	1148
MflI	RGATCY	4 cut(s)	78, 280, 469, 787
MhlI	GDGCHC	2 cut(s)	65, 76
MluCI	AATT	4 cut(s)	976, 1064, 1148, 1192
Mly113I	GGCGCC	1 cut(s)	813
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	2 cut(s)	207, 889
MroI	TCCGGA	2 cut(s)	167, 754
MseI	TTAA	2 cut(s)	120, 777
MslI	CAYNNNNRTG	3 cut(s)	1104, 1107, 1182
MspI	CCGG	7 cut(s)	168, 606, 614, 630, 669, 755, 866
MspR9I	CCNGG	2 cut(s)	669, 670
MunI	CAATTG	1 cut(s)	1148
MwoI	GCNNNNNNNGC	1 cut(s)	854
NarI	GGCGCC	1 cut(s)	813
NciI	CCSGG	2 cut(s)	669, 670
NlaIII	CATG	5 cut(s)	16, 683, 710, 958, 1106
NlaIV	GGNNCC	1 cut(s)	814
NmeAIII	GCCGAG	1 cut(s)	841
NmuCI	GTSAC	2 cut(s)	136, 835
NspV	TTCGAA	2 cut(s)	315, 531
OliI	CACNNNNGTG	1 cut(s)	1182
PagI	TCATGA	1 cut(s)	1102
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	4 cut(s)	299, 758, 943, 1157
PinAI	ACCGGT	2 cut(s)	629, 865
PleI	GAGTC	1 cut(s)	884
PluTI	GGCGCC	1 cut(s)	816
PpsI	GAGTC	1 cut(s)	884
Psp1406I	AACGTT	1 cut(s)	896
PspN4I	GGNNCC	1 cut(s)	814
PspPI	GGNCC	1 cut(s)	863
PsuI	RGATCY	4 cut(s)	78, 280, 469, 787
RsaI	GTAC	2 cut(s)	628, 953
RsaNI	GTAC	2 cut(s)	627, 952
RseI	CAYNNNNRTG	3 cut(s)	1104, 1107, 1182
SalI	GTCGAC	1 cut(s)	1026
SaqAI	TTAA	2 cut(s)	120, 777
Sau96I	GGNCC	1 cut(s)	863
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	2 cut(s)	669, 670
SduI	GDGCHC	2 cut(s)	65, 76
SfoI	GGCGCC	1 cut(s)	814
SfuI	TTCGAA	2 cut(s)	315, 531
SinI	GGWCC	1 cut(s)	863
SmaI	CCCGGG	1 cut(s)	670
SmiMI	CAYNNNNRTG	3 cut(s)	1104, 1107, 1182
SmlI	CTYRAG	2 cut(s)	158, 843
SmoI	CTYRAG	2 cut(s)	158, 843
Sse9I	AATT	4 cut(s)	976, 1064, 1148, 1192
SspDI	GGCGCC	1 cut(s)	812
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	667, 668
TaaI	ACNGT	2 cut(s)	215, 881
TaiI	ACGT	2 cut(s)	772, 899
TaqI	TCGA	8 cut(s)	48, 84, 315, 339, 375, 531, 870, 1027
TasI	AATT	4 cut(s)	976, 1064, 1148, 1192
TfiI	GAWTC	4 cut(s)	299, 758, 943, 1157
Tru1I	TTAA	2 cut(s)	120, 777
Tru9I	TTAA	2 cut(s)	120, 777
TscAI	CASTG	2 cut(s)	363, 720
TseFI	GTSAC	2 cut(s)	136, 835
Tsp45I	GTSAC	2 cut(s)	136, 835
TspDTI	ATGAA	8 cut(s)	273, 428, 447, 668, 971, 1077, 1125, 1131
TspGWI	ACGGA	2 cut(s)	293, 587
TspMI	CCCGGG	1 cut(s)	668
TspRI	CASTG	2 cut(s)	363, 720
VpaK11BI	GGWCC	1 cut(s)	863
XapI	RAATTY	3 cut(s)	976, 1064, 1192
XcmI	CCANNNNNNNNNTGG	2 cut(s)	800, 1221
XmaI	CCCGGG	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	1027
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.