Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Reverse (-)

9201220 .. 9205415

Gene Structure 4196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCAACACTGACACAACCATTGCTCCAACCCCCACAACAACTAGTACCACCACCCACCACTAGCAGCACAAACACCACCACTGCCAGCACCAACACCACCAATATCAACGCCACTACCGCCACCACCAACAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATCGACAATGACATCTCAGCCTCCATCGATTTTTCCCCATCCCCTCCCTTTTCCGTACCTCCATTTCTCATGACCCAACAAGACCAATTTGATTTCACTTCAGTGCCAACTCAAATCCCACTAGCAGATTCTGTTGTTGAGGGATTTTCACAGTATCCTGCTGACCCTGTACCGCCTCTCATGTCGGCTCCTTTGTCATCAGTTTTCGAAGAGGATTGCTTGTCCTCAGTGCCTTCGTATGTGCCTTTGAACCCCTCTTCTCCTTCTTGTTCTTTTCTTGGTCCTACCATGGGAGCATACATGCCTGCTGGGACTATGAATGCTGCAGCATTATCTGCTGACAGCACTGGAATTTTCACCAGCAGTATCCTCATGGCTTCTGAACTGCAACCACAAGATTTGGAATACCAAGGAGATAATGGTGGAATTTTCTGTCCAGAATCATTACAGAGGGGTTTTAACCCTGAAGACCTTCAGATGCTTGGTGCTGAGAGCCAACAACTGGTGAGTGGGGCTGGGAACTCTACTTCTTTACCAACTGAGATTCCCATGGCAGAAGACCCAAATTTTAAAGTAGGGAAGCTATCTGTTGAGGAAAGGAAAGAGAAGATACATAGGTACATGAAGAAAAGGAATGAAAGGAATTTCACAAAGAAAATCAAGTATGCCTGCCGCAAAACTCTTGCGGACAGCAGACCTCGAGTTAGAGGAAGATTTGCGAAGAATGATGATTTTGGAGAGAATCATAGACCTTCTGGTAGCAACCATGAAGACGATGAAGACGATGAAGTAGTTGTGAAAGAGGAGAGGATATGGTTGATTCCTCGGACATCTTCGCTCATATCAGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

344

Amino Acids

37.5

Weight (kDa)

4.54

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	260 - 302	7.2e-19	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	682
AciI	CCGC	4 cut(s)	120, 353, 853, 866
AcsI	RAATTY	4 cut(s)	531, 606, 745, 823
AcuI	CTGAAG	3 cut(s)	264, 638, 666
AfaI	GTAC	4 cut(s)	48, 237, 351, 800
AfiI	CCNNNNNNNGG	2 cut(s)	470, 682
AgsI	TTSAA	1 cut(s)	430
AhlI	ACTAGT	1 cut(s)	43
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	1 cut(s)	763
AluI	AGCT	1 cut(s)	763
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	879
ApeKI	GCWGC	3 cut(s)	66, 503, 506
ApoI	RAATTY	4 cut(s)	531, 606, 745, 823
Asp700I	GAANNNNTTC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	529, 697
AsuII	TTCGAA	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	879
AvaII	GGWCC	1 cut(s)	461
BaeI	ACNNNNGTAYC	2 cut(s)	782, 815
BbsI	GAAGAC	4 cut(s)	654, 744, 957, 966
BbvI	GCAGC	3 cut(s)	78, 490, 518
BccI	CCATC	2 cut(s)	212, 226
BciVI	GTATCC	2 cut(s)	345, 557
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	3 cut(s)	44, 63, 302
BfmI	CTRYAG	1 cut(s)	504
BfuI	GTATCC	2 cut(s)	345, 557
BisI	GCNGC	4 cut(s)	67, 504, 507, 853
BlsI	GCNGC	4 cut(s)	68, 505, 508, 854
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	879
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	369
BmsI	GCATC	1 cut(s)	648
BpiI	GAAGAC	4 cut(s)	654, 744, 957, 966
Bpu14I	TTCGAA	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	207
BsaJI	CCNNGG	4 cut(s)	468, 589, 729, 1004
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 682
Bse1I	ACTGG	2 cut(s)	532, 687
Bse3DI	GCAATG	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	4 cut(s)	468, 589, 729, 1004
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	470, 682
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	4 cut(s)	210, 420, 660, 711
BseNI	ACTGG	2 cut(s)	532, 687
BseRI	GAGGAG	1 cut(s)	998
BseXI	GCAGC	3 cut(s)	78, 490, 518
BseYI	CCCAGC	2 cut(s)	488, 695
BshVI	ATCGAT	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	879
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	2 cut(s)	470, 682
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	879
Bsp119I	TTCGAA	1 cut(s)	387
Bsp19I	CCATGG	2 cut(s)	468, 729
BspACI	CCGC	4 cut(s)	120, 353, 853, 866
BspCNI	CTCAG	4 cut(s)	209, 419, 661, 712
BspDI	ATCGAT	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	532, 687
BssECI	CCNNGG	4 cut(s)	468, 589, 729, 1004
BssT1I	CCWWGG	3 cut(s)	468, 589, 729
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	2 cut(s)	384, 442
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	88, 486, 850
BstDEI	CTNAG	4 cut(s)	196, 406, 669, 720
BstDSI	CCRYGG	2 cut(s)	468, 729
BstF5I	GGATG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 515
BstNSI	RCATGY	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	78, 490, 518
BstV2I	GAAGAC	4 cut(s)	654, 744, 957, 966
Bsu15I	ATCGAT	1 cut(s)	207
BsuI	GTATCC	2 cut(s)	345, 557
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	2 cut(s)	468, 729
BtsCI	GGATG	1 cut(s)	218
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	6 cut(s)	8, 81, 288, 414, 525, 1032
Cac8I	GCNNGC	3 cut(s)	88, 486, 850
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	461
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	4 cut(s)	47, 236, 350, 799
CspCI	CAANNNNNGTGG	4 cut(s)	124, 159, 561, 596
CviAII	CATG	8 cut(s)	250, 361, 469, 481, 553, 730, 802, 947
CviJI	RGCY	6 cut(s)	200, 368, 557, 675, 695, 763
CviKI_1	RGCY	6 cut(s)	200, 368, 557, 675, 695, 763
CviQI	GTAC	4 cut(s)	47, 236, 350, 799
DdeI	CTNAG	4 cut(s)	196, 406, 669, 720
DraI	TTTAAA	1 cut(s)	751
Eam1104I	CTCTTC	2 cut(s)	384, 442
EarI	CTCTTC	2 cut(s)	384, 442
Eco130I	CCWWGG	3 cut(s)	468, 589, 729
Eco47I	GGWCC	1 cut(s)	461
Eco57I	CTGAAG	3 cut(s)	264, 638, 666
Eco88I	CYCGRG	1 cut(s)	879
EcoT14I	CCWWGG	3 cut(s)	468, 589, 729
ErhI	CCWWGG	3 cut(s)	468, 589, 729
FaeI	CATG	8 cut(s)	253, 364, 472, 484, 556, 733, 805, 950
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	8 cut(s)	249, 360, 468, 480, 552, 729, 801, 946
Fnu4HI	GCNGC	4 cut(s)	67, 504, 507, 853
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	4 cut(s)	67, 504, 507, 853
FspBI	CTAG	3 cut(s)	44, 63, 302
GluI	GCNGC	4 cut(s)	67, 504, 507, 853
GsaI	CCCAGC	2 cut(s)	492, 699
Hin1II	CATG	8 cut(s)	253, 364, 472, 484, 556, 733, 805, 950
HinfI	GANTC	6 cut(s)	167, 308, 620, 724, 922, 1000
HphI	GGTGA	2 cut(s)	529, 697
Hpy188I	TCNGA	3 cut(s)	562, 657, 1008
Hpy188III	TCNNGA	2 cut(s)	250, 617
HpyAV	CCTTC	4 cut(s)	423, 453, 662, 942
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	506, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 515
HpyF3I	CTNAG	4 cut(s)	196, 406, 669, 720
Hsp92II	CATG	8 cut(s)	253, 364, 472, 484, 556, 733, 805, 950
LmnI	GCTCC	3 cut(s)	30, 373, 473
Lsp1109I	GCAGC	3 cut(s)	78, 490, 518
LweI	GCATC	1 cut(s)	648
MaeI	CTAG	3 cut(s)	44, 63, 302
MluCI	AATT	5 cut(s)	266, 531, 606, 745, 823
MmeI	TCCRAC	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	2 cut(s)	639, 750
MslI	CAYNNNNRTG	2 cut(s)	281, 1025
Mva1269I	GAATGC	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	119, 515
NcoI	CCATGG	2 cut(s)	468, 729
NlaIII	CATG	8 cut(s)	253, 364, 472, 484, 556, 733, 805, 950
NlaIV	GGNNCC	1 cut(s)	369
NspI	RCATGY	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	387
OliI	CACNNNNGTG	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	879
PagI	TCATGA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	960
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	6 cut(s)	167, 308, 620, 724, 922, 1000
PflMI	CCANNNNNTGG	1 cut(s)	682
PkrI	GCNGC	4 cut(s)	68, 505, 508, 854
PspFI	CCCAGC	2 cut(s)	488, 695
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	461
PspXI	VCTCGAGB	1 cut(s)	879
PstI	CTGCAG	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	311
RsaI	GTAC	4 cut(s)	48, 237, 351, 800
RsaNI	GTAC	4 cut(s)	47, 236, 350, 799
RseI	CAYNNNNRTG	2 cut(s)	281, 1025
SaqAI	TTAA	2 cut(s)	639, 750
SatI	GCNGC	4 cut(s)	67, 504, 507, 853
Sau96I	GGNCC	1 cut(s)	461
SetI	ASST	6 cut(s)	241, 654, 765, 800, 880, 934
SfaNI	GCATC	1 cut(s)	648
SfcI	CTRYAG	1 cut(s)	504
Sfr274I	CTCGAG	1 cut(s)	879
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	879
SmiMI	CAYNNNNRTG	2 cut(s)	281, 1025
SmlI	CTYRAG	1 cut(s)	879
SmoI	CTYRAG	1 cut(s)	879
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	5 cut(s)	266, 531, 606, 745, 823
SsiI	CCGC	4 cut(s)	120, 353, 853, 866
SspMI	CTAG	3 cut(s)	44, 63, 302
StyI	CCWWGG	3 cut(s)	468, 589, 729
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	4 cut(s)	183, 207, 387, 880
TasI	AATT	5 cut(s)	266, 531, 606, 745, 823
TauI	GCSGC	1 cut(s)	855
TfiI	GAWTC	6 cut(s)	167, 308, 620, 724, 922, 1000
Tru1I	TTAA	2 cut(s)	639, 750
Tru9I	TTAA	2 cut(s)	639, 750
TscAI	CASTG	6 cut(s)	15, 88, 288, 414, 532, 1032
TseI	GCWGC	3 cut(s)	66, 503, 506
TspDTI	ATGAA	6 cut(s)	512, 818, 831, 963, 972, 981
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	6 cut(s)	15, 88, 288, 414, 532, 1032
Van91I	CCANNNNNTGG	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	4 cut(s)	531, 606, 745, 823
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	3 cut(s)	44, 63, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.