Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Reverse (-)

11856298 .. 11860635

Gene Structure 4338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG062700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTTGCACCAGGTGATTCAGCAGCAGCAAGAACAGGATGAAATTTCAAGCCAGATTAGTGCTCAAATTTTCGAATTCTGTGATCCTGAACTATTCCAAGAGACCCTGCAGAATTCTGAGGTCACTTCTTCTTCAAATTGCTGCTATGATGAAAACTCCTCTTATGCAACAAATCTTTCGCTGCCCCTGGATTTAGAAACTAAATTCAGTACCTACCAGGATAACAATGGCAACACTGACACAACCATTGCTCCAACCCCCACAACAACTAGTACCACCACCACCACCACCACTAGCAGCACAAACACCACCACTGCCAGCACCAACACCACCAATATCAACGCCACTACCGCCACCACCACCAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATCGACAATGACATCTCAGCCTCCATCGATTTTTCCCCATCCCCTCCCTTTTCCGTACCTCCATTTCTCATGACCCAACAAGACCAATTTGATTTCACTTCAGTGCCAACTCAAATCCCACTAGCAGATTCTGTTGTTGAGGGATTTTCACAGTATCCTGCTGACCCTGTACCGCCTCTCATGTCGGCTCCTTTGTCATCAGTTTTCGAAGAGGATTGCTTGTCCTCAGTGCCTTCGTATGTGCCTTTGAACCCCTCTTCTCCTTCTTGTTCTTTTCTTGGTCCTACCATGGGAGCATACATGCCTGCTGGGACTATGAATGCTGCAGCATTATCTGCTGACAGCACTGGAATTTTCACCAGCAGTATCCTCATGGCTTCTGAACTGCAACCACAAGATTTGGAATACCAAGGAGATAATGGTGGAATTTTCTGTCCAGAATCATTACCGAGGGGTTTTAACCCTGAAGACCTTCAGGTACTAATAATACTTATAATTAGCAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

306

Amino Acids

32.82

Weight (kDa)

4.05

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	905
AciI	CCGC	2 cut(s)	351, 584
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	7 cut(s)	42, 66, 74, 112, 203, 762, 837
AcuI	CTGAAG	3 cut(s)	495, 869, 897
AdeI	CACNNNGTG	1 cut(s)	13
AfaI	GTAC	5 cut(s)	211, 274, 468, 582, 891
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	3 cut(s)	48, 135, 661
AhlI	ACTAGT	1 cut(s)	269
AjnI	CCWGG	3 cut(s)	9, 186, 216
AleI	CACNNNNGTG	1 cut(s)	512
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	542
ApeKI	GCWGC	7 cut(s)	22, 25, 141, 181, 297, 734, 737
ApoI	RAATTY	7 cut(s)	42, 66, 74, 112, 203, 762, 837
Asp700I	GAANNNNTTC	1 cut(s)	882
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	25, 760
AsuII	TTCGAA	2 cut(s)	72, 618
AvaII	GGWCC	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	7 cut(s)	34, 37, 128, 168, 309, 721, 749
BccI	CCATC	2 cut(s)	443, 457
BciT130I	CCWGG	3 cut(s)	11, 188, 218
BciVI	GTATCC	2 cut(s)	576, 788
BcoDI	GTCTC	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	3 cut(s)	270, 294, 533
BfmI	CTRYAG	2 cut(s)	107, 735
BfuI	GTATCC	2 cut(s)	576, 788
BisI	GCNGC	7 cut(s)	23, 26, 142, 182, 298, 735, 738
BlsI	GCNGC	7 cut(s)	24, 27, 143, 183, 299, 736, 739
Bme1390I	CCNGG	3 cut(s)	11, 188, 218
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	3 cut(s)	11, 188, 218
BpiI	GAAGAC	1 cut(s)	885
Bpu14I	TTCGAA	2 cut(s)	72, 618
Bsa29I	ATCGAT	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	4 cut(s)	186, 699, 820, 860
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	763
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	11, 188, 218
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	4 cut(s)	186, 699, 820, 860
BseGI	GGATG	2 cut(s)	43, 449
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	108, 441, 651
BseNI	ACTGG	1 cut(s)	763
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	7 cut(s)	34, 37, 128, 168, 309, 721, 749
BseYI	CCCAGC	1 cut(s)	719
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	736
BsmI	GAATGC	1 cut(s)	736
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	2 cut(s)	72, 618
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	82
Bsp19I	CCATGG	1 cut(s)	699
BspACI	CCGC	2 cut(s)	351, 584
BspCNI	CTCAG	3 cut(s)	109, 440, 650
BspDI	ATCGAT	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	600
BspMAI	CTGCAG	2 cut(s)	111, 739
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	2 cut(s)	72, 618
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	763
BssECI	CCNNGG	4 cut(s)	186, 699, 820, 860
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	699, 820
Bst2UI	CCWGG	3 cut(s)	11, 188, 218
Bst4CI	ACNGT	1 cut(s)	564
Bst6I	CTCTTC	2 cut(s)	615, 673
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstBI	TTCGAA	2 cut(s)	72, 618
BstC8I	GCNNGC	2 cut(s)	319, 717
BstDEI	CTNAG	4 cut(s)	117, 427, 637, 918
BstDSI	CCRYGG	1 cut(s)	699
BstF5I	GGATG	2 cut(s)	43, 449
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 746
BstNI	CCWGG	3 cut(s)	11, 188, 218
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	3 cut(s)	9, 186, 216
BstSFI	CTRYAG	2 cut(s)	107, 735
BstV1I	GCAGC	7 cut(s)	34, 37, 128, 168, 309, 721, 749
BstV2I	GAAGAC	1 cut(s)	885
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	2 cut(s)	576, 788
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	43, 449
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	5 cut(s)	234, 312, 519, 645, 756
Cac8I	GCNNGC	2 cut(s)	319, 717
CaiI	CAGNNNCTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	692
ClaI	ATCGAT	1 cut(s)	438
CsiI	ACCWGGT	1 cut(s)	9
Csp6I	GTAC	5 cut(s)	210, 273, 467, 581, 890
CspCI	CAANNNNNGTGG	4 cut(s)	355, 390, 792, 827
CviAII	CATG	5 cut(s)	481, 592, 700, 712, 784
CviJI	RGCY	4 cut(s)	51, 431, 599, 788
CviKI_1	RGCY	4 cut(s)	51, 431, 599, 788
CviQI	GTAC	5 cut(s)	210, 273, 467, 581, 890
DdeI	CTNAG	4 cut(s)	117, 427, 637, 918
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DraIII	CACNNNGTG	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	615, 673
EarI	CTCTTC	2 cut(s)	615, 673
Eco130I	CCWWGG	2 cut(s)	699, 820
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	3 cut(s)	495, 869, 897
EcoRI	GAATTC	2 cut(s)	74, 112
EcoRII	CCWGG	3 cut(s)	9, 186, 216
EcoT14I	CCWWGG	2 cut(s)	699, 820
ErhI	CCWWGG	2 cut(s)	699, 820
FaeI	CATG	5 cut(s)	484, 595, 703, 715, 787
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	5 cut(s)	480, 591, 699, 711, 783
Fnu4HI	GCNGC	7 cut(s)	23, 26, 142, 182, 298, 735, 738
FokI	GGATG	2 cut(s)	50, 436
Fsp4HI	GCNGC	7 cut(s)	23, 26, 142, 182, 298, 735, 738
FspBI	CTAG	3 cut(s)	270, 294, 533
GluI	GCNGC	7 cut(s)	23, 26, 142, 182, 298, 735, 738
GsaI	CCCAGC	1 cut(s)	723
Hin1II	CATG	5 cut(s)	484, 595, 703, 715, 787
HinfI	GANTC	4 cut(s)	16, 398, 539, 851
HphI	GGTGA	2 cut(s)	25, 760
Hpy188I	TCNGA	2 cut(s)	118, 793
Hpy188III	TCNNGA	3 cut(s)	86, 481, 848
HpyAV	CCTTC	3 cut(s)	654, 684, 893
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4V	TGCA	5 cut(s)	7, 109, 167, 737, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 746
HpyF3I	CTNAG	4 cut(s)	117, 427, 637, 918
Hsp92II	CATG	5 cut(s)	484, 595, 703, 715, 787
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	3 cut(s)	256, 604, 704
Lsp1109I	GCAGC	7 cut(s)	34, 37, 128, 168, 309, 721, 749
MabI	ACCWGGT	1 cut(s)	9
MaeI	CTAG	3 cut(s)	270, 294, 533
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	6 cut(s)	120, 123, 419, 632, 660, 890
MhlI	GDGCHC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	882
MseI	TTAA	1 cut(s)	870
MslI	CAYNNNNRTG	1 cut(s)	512
MspR9I	CCNGG	3 cut(s)	11, 188, 218
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	3 cut(s)	11, 188, 218
MwoI	GCNNNNNNNGC	2 cut(s)	350, 746
NcoI	CCATGG	1 cut(s)	699
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	5 cut(s)	484, 595, 703, 715, 787
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	715
NspV	TTCGAA	2 cut(s)	72, 618
OliI	CACNNNNGTG	1 cut(s)	512
PagI	TCATGA	1 cut(s)	480
PctI	GAATGC	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	4 cut(s)	16, 398, 539, 851
PkrI	GCNGC	7 cut(s)	24, 27, 143, 183, 299, 736, 739
PsiI	TTATAA	1 cut(s)	905
Psp6I	CCWGG	3 cut(s)	9, 186, 216
PspFI	CCCAGC	1 cut(s)	719
PspGI	CCWGG	3 cut(s)	9, 186, 216
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	2 cut(s)	111, 739
PstNI	CAGNNNCTG	1 cut(s)	542
RsaI	GTAC	5 cut(s)	211, 274, 468, 582, 891
RsaNI	GTAC	5 cut(s)	210, 273, 467, 581, 890
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	1 cut(s)	870
SatI	GCNGC	7 cut(s)	23, 26, 142, 182, 298, 735, 738
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	692
ScrFI	CCNGG	3 cut(s)	11, 188, 218
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	6 cut(s)	15, 123, 215, 472, 885, 891
SexAI	ACCWGGT	1 cut(s)	9
SfcI	CTRYAG	2 cut(s)	107, 735
SfuI	TTCGAA	2 cut(s)	72, 618
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	512
SpeI	ACTAGT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	351, 584
SspMI	CTAG	3 cut(s)	270, 294, 533
StyD4I	CCNGG	3 cut(s)	9, 186, 216
StyI	CCWWGG	2 cut(s)	699, 820
TaaI	ACNGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	72, 414, 438, 618
TfiI	GAWTC	4 cut(s)	16, 398, 539, 851
Tru1I	TTAA	1 cut(s)	870
Tru9I	TTAA	1 cut(s)	870
TscAI	CASTG	5 cut(s)	241, 319, 519, 645, 763
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	7 cut(s)	22, 25, 141, 181, 297, 734, 737
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	54, 165, 743
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	5 cut(s)	241, 319, 519, 645, 763
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	7 cut(s)	42, 66, 74, 112, 203, 762, 837
XceI	RCATGY	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 827
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	3 cut(s)	270, 294, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.