Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Reverse (-)

10151406 .. 10155716

Gene Structure 4311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG056600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAAGAATGATGCTTCTACTTGGCTTAAGAAAAAGGATGAAATTTCAAGCCAGATTAGTGCTCAAATTTTCGAATTCTGTGATCCTGAACTATTCCATGAGACCCTGCAGAATTCTGAGGTCACTTCTTCTTCAAATTGCTGCTATGATGAAAACTCCTCTTATGCAACAAATATTTCGCTGCCCCTGGATTTAGAAACTAAATTCAGTACCTACCAGGATAACAATGGCAACACTGACACAACCATTGCTCCAACCCCCACAACAACTAGTACCACCACCACTAGCAGCACAAACACCACCACTGCCAGCACCAACACCACCAATATCAACGCCACTACCGCCACCACCAACAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATCGACAATGACATCTCAGCCTCCATCGATTTTTCCCCATCCCCTCCCTTTTCCGTACCTCCATTTCTCATGACCCAACAAGACCAATTTGATTTCACTTCAGTGCCAACTCAAATCCCACTAGCAGATTCTGTTGTTGAGGGATTTTCACAGTATCCTGCTGACCCTGTACCGCCTCTCATGTCGGCTCCTTTGTCATCAGTTTTCGAAGAGGATTGCTTGTCCTCAGTGCCTTCGTATGTGCCTTTGAACCCCTCTTCTCCTTCTTGTTCTTTTCTTGGTCCTACCATGGGAGCATACATGCCTGCTGGGACTATGAATGCTGCAGCATTATCTGCTGACAGCACTGGAATTTTCACCAGCAGTATCCTCATGGCTTCTGAACTGCAACCACAAGATTTGGAATACCAAGGAGATAACGGTGGAATTTTCTGTCCAGAATCATTACAGAGGGGTTTTAACCCTGAAGACCTTCAGATGCTTGGTGCTGAGAGCCAACAACTGGTGAGTGGGGCTGGGAACTCTACTTCTTTACCAACTGAGATTCCCATGGCAGAAGACCCAAATTTTAAAGTAGGGAAGCTATCTGTTGAGGAAAGGAAAGAGAAGATACATAGGTACATGAAGAAAAGGAATGAAAGGAATTTCACAAAGAAAATCAAGTATGCCTGCCGCAAAACTCTTGCGGACAGCAGACCTCGAGTTAGAGGAAGATTTGCGAAGAATGATGATTTTGGAGAGAATCATAGACCTTCTGGTAGCAACCATGAAGACGATGAAGACGATGAAGTAAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

400

Amino Acids

43.65

Weight (kDa)

4.36

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	334 - 376	8.9e-19	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	904
AciI	CCGC	4 cut(s)	342, 575, 1075, 1088
AclWI	GGATC	1 cut(s)	77
AcuI	CTGAAG	3 cut(s)	486, 860, 888
AfaI	GTAC	5 cut(s)	211, 274, 459, 573, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	692, 904
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	48, 135, 652
AhlI	ACTAGT	1 cut(s)	269
AjnI	CCWGG	2 cut(s)	186, 216
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	1 cut(s)	985
AluI	AGCT	1 cut(s)	985
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	1101
ApeKI	GCWGC	5 cut(s)	141, 181, 288, 725, 728
Asp700I	GAANNNNTTC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	2 cut(s)	751, 919
AsuII	TTCGAA	2 cut(s)	72, 609
AvaI	CYCGRG	1 cut(s)	1101
AvaII	GGWCC	1 cut(s)	683
BaeI	ACNNNNGTAYC	2 cut(s)	1004, 1037
BbsI	GAAGAC	4 cut(s)	876, 966, 1179, 1188
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	5 cut(s)	128, 168, 300, 712, 740
BccI	CCATC	2 cut(s)	434, 448
BciT130I	CCWGG	2 cut(s)	188, 218
BciVI	GTATCC	2 cut(s)	567, 779
BcoDI	GTCTC	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	3 cut(s)	270, 285, 524
BfmI	CTRYAG	2 cut(s)	107, 726
BfrI	CTTAAG	1 cut(s)	26
BfuI	GTATCC	2 cut(s)	567, 779
BisI	GCNGC	6 cut(s)	142, 182, 289, 726, 729, 1075
BlsI	GCNGC	6 cut(s)	143, 183, 290, 727, 730, 1076
Bme1390I	CCNGG	2 cut(s)	188, 218
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	1101
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	2 cut(s)	188, 218
BmsI	GCATC	1 cut(s)	870
BpiI	GAAGAC	4 cut(s)	876, 966, 1179, 1188
Bpu14I	TTCGAA	2 cut(s)	72, 609
Bsa29I	ATCGAT	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	4 cut(s)	186, 690, 811, 951
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 904
Bse1I	ACTGG	2 cut(s)	754, 909
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	188, 218
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	186, 690, 811, 951
BseGI	GGATG	2 cut(s)	43, 440
BseLI	CCNNNNNNNGG	2 cut(s)	692, 904
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	5 cut(s)	108, 432, 642, 882, 933
BseNI	ACTGG	2 cut(s)	754, 909
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	5 cut(s)	128, 168, 300, 712, 740
BseYI	CCCAGC	2 cut(s)	710, 917
BshVI	ATCGAT	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	1101
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	2 cut(s)	692, 904
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	727
BsmI	GAATGC	1 cut(s)	727
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	1101
Bsp119I	TTCGAA	2 cut(s)	72, 609
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	82
Bsp19I	CCATGG	2 cut(s)	690, 951
BspACI	CCGC	4 cut(s)	342, 575, 1075, 1088
BspCNI	CTCAG	5 cut(s)	109, 431, 641, 883, 934
BspDI	ATCGAT	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	2 cut(s)	111, 730
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	2 cut(s)	72, 609
BspTI	CTTAAG	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	754, 909
BssECI	CCNNGG	4 cut(s)	186, 690, 811, 951
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	3 cut(s)	690, 811, 951
Bst2UI	CCWGG	2 cut(s)	188, 218
Bst4CI	ACNGT	2 cut(s)	555, 824
Bst6I	CTCTTC	2 cut(s)	606, 664
BstAFI	CTTAAG	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBI	TTCGAA	2 cut(s)	72, 609
BstC8I	GCNNGC	3 cut(s)	310, 708, 1072
BstDEI	CTNAG	6 cut(s)	117, 418, 628, 891, 942, 1200
BstDSI	CCRYGG	2 cut(s)	690, 951
BstF5I	GGATG	2 cut(s)	43, 440
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 737
BstNI	CCWGG	2 cut(s)	188, 218
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	2 cut(s)	186, 216
BstSFI	CTRYAG	2 cut(s)	107, 726
BstV1I	GCAGC	5 cut(s)	128, 168, 300, 712, 740
BstV2I	GAAGAC	4 cut(s)	876, 966, 1179, 1188
Bsu15I	ATCGAT	1 cut(s)	429
BsuI	GTATCC	2 cut(s)	567, 779
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	2 cut(s)	690, 951
BtsCI	GGATG	2 cut(s)	43, 440
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	5 cut(s)	234, 303, 510, 636, 747
Cac8I	GCNNGC	3 cut(s)	310, 708, 1072
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	683
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	5 cut(s)	210, 273, 458, 572, 1021
CspCI	CAANNNNNGTGG	4 cut(s)	346, 381, 783, 818
CviAII	CATG	9 cut(s)	98, 472, 583, 691, 703, 775, 952, 1024, 1169
CviJI	RGCY	8 cut(s)	25, 51, 422, 590, 779, 897, 917, 985
CviKI_1	RGCY	8 cut(s)	25, 51, 422, 590, 779, 897, 917, 985
CviQI	GTAC	5 cut(s)	210, 273, 458, 572, 1021
DdeI	CTNAG	6 cut(s)	117, 418, 628, 891, 942, 1200
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DraI	TTTAAA	1 cut(s)	973
Eam1104I	CTCTTC	2 cut(s)	606, 664
EarI	CTCTTC	2 cut(s)	606, 664
Eco130I	CCWWGG	3 cut(s)	690, 811, 951
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	3 cut(s)	486, 860, 888
Eco88I	CYCGRG	1 cut(s)	1101
EcoRI	GAATTC	2 cut(s)	74, 112
EcoRII	CCWGG	2 cut(s)	186, 216
EcoT14I	CCWWGG	3 cut(s)	690, 811, 951
ErhI	CCWWGG	3 cut(s)	690, 811, 951
FaeI	CATG	9 cut(s)	101, 475, 586, 694, 706, 778, 955, 1027, 1172
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	9 cut(s)	97, 471, 582, 690, 702, 774, 951, 1023, 1168
Fnu4HI	GCNGC	6 cut(s)	142, 182, 289, 726, 729, 1075
FokI	GGATG	2 cut(s)	50, 427
Fsp4HI	GCNGC	6 cut(s)	142, 182, 289, 726, 729, 1075
FspBI	CTAG	3 cut(s)	270, 285, 524
GluI	GCNGC	6 cut(s)	142, 182, 289, 726, 729, 1075
GsaI	CCCAGC	2 cut(s)	714, 921
Hin1II	CATG	9 cut(s)	101, 475, 586, 694, 706, 778, 955, 1027, 1172
HinfI	GANTC	5 cut(s)	389, 530, 842, 946, 1144
HphI	GGTGA	2 cut(s)	751, 919
Hpy188I	TCNGA	3 cut(s)	118, 784, 879
Hpy188III	TCNNGA	3 cut(s)	86, 472, 839
HpyAV	CCTTC	4 cut(s)	645, 675, 884, 1164
HpyCH4III	ACNGT	2 cut(s)	555, 824
HpyCH4V	TGCA	4 cut(s)	109, 167, 728, 790
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 737
HpyF3I	CTNAG	6 cut(s)	117, 418, 628, 891, 942, 1200
Hsp92II	CATG	9 cut(s)	101, 475, 586, 694, 706, 778, 955, 1027, 1172
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	3 cut(s)	256, 595, 695
Lsp1109I	GCAGC	5 cut(s)	128, 168, 300, 712, 740
LweI	GCATC	1 cut(s)	870
MaeI	CTAG	3 cut(s)	270, 285, 524
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	3 cut(s)	27, 861, 972
MslI	CAYNNNNRTG	1 cut(s)	503
MspCI	CTTAAG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	188, 218
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	2 cut(s)	188, 218
MwoI	GCNNNNNNNGC	2 cut(s)	341, 737
NcoI	CCATGG	2 cut(s)	690, 951
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	9 cut(s)	101, 475, 586, 694, 706, 778, 955, 1027, 1172
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	706
NspV	TTCGAA	2 cut(s)	72, 609
OliI	CACNNNNGTG	1 cut(s)	503
PaeR7I	CTCGAG	1 cut(s)	1101
PagI	TCATGA	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	1182
PctI	GAATGC	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	5 cut(s)	389, 530, 842, 946, 1144
PflMI	CCANNNNNTGG	1 cut(s)	904
PkrI	GCNGC	6 cut(s)	143, 183, 290, 727, 730, 1076
Psp6I	CCWGG	2 cut(s)	186, 216
PspFI	CCCAGC	2 cut(s)	710, 917
PspGI	CCWGG	2 cut(s)	186, 216
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	683
PspXI	VCTCGAGB	1 cut(s)	1101
PstI	CTGCAG	2 cut(s)	111, 730
PstNI	CAGNNNCTG	1 cut(s)	533
RsaI	GTAC	5 cut(s)	211, 274, 459, 573, 1022
RsaNI	GTAC	5 cut(s)	210, 273, 458, 572, 1021
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	3 cut(s)	27, 861, 972
SatI	GCNGC	6 cut(s)	142, 182, 289, 726, 729, 1075
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	683
ScrFI	CCNGG	2 cut(s)	188, 218
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	8 cut(s)	123, 215, 463, 876, 987, 1022, 1102, 1156
SfaNI	GCATC	1 cut(s)	870
SfcI	CTRYAG	2 cut(s)	107, 726
Sfr274I	CTCGAG	1 cut(s)	1101
SfuI	TTCGAA	2 cut(s)	72, 609
SinI	GGWCC	1 cut(s)	683
SlaI	CTCGAG	1 cut(s)	1101
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	26, 1101
SmoI	CTYRAG	2 cut(s)	26, 1101
SpeI	ACTAGT	1 cut(s)	269
SsiI	CCGC	4 cut(s)	342, 575, 1075, 1088
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	3 cut(s)	270, 285, 524
StyD4I	CCNGG	2 cut(s)	186, 216
StyI	CCWWGG	3 cut(s)	690, 811, 951
TaaI	ACNGT	2 cut(s)	555, 824
TaqI	TCGA	5 cut(s)	72, 405, 429, 609, 1102
TauI	GCSGC	1 cut(s)	1077
TfiI	GAWTC	5 cut(s)	389, 530, 842, 946, 1144
Tru1I	TTAA	3 cut(s)	27, 861, 972
Tru9I	TTAA	3 cut(s)	27, 861, 972
TscAI	CASTG	5 cut(s)	241, 310, 510, 636, 754
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	5 cut(s)	141, 181, 288, 725, 728
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	9 cut(s)	17, 54, 165, 734, 1040, 1053, 1185, 1194, 1203
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	5 cut(s)	241, 310, 510, 636, 754
Van91I	CCANNNNNTGG	1 cut(s)	904
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	683
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	1101
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	3 cut(s)	270, 285, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.