Rroxscaffold_5G00340150

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0005795
Physical Location & Seq
Reverse (-)
8506359 .. 8509320
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340150.1

Sequence Viewer

Length: 1329 bp
ATGAAGAATGATGCTTCTACTTGGCTTAAGAAAAAGGATGAAATTTCAAGCCAGATTAGTGCTCAAATTTTCGAATTCTGTGATCCTGAACTATTCCAAGAGACCCTGCAGAATTCTGAGGTCACGTCTTCTTCAAATTGCTGCTATGATGAAAACTCCTCTTATGTAACGAATCTTTCGCTGCCCCAGGATTTGGAAACTAAATTCAGTACCTACCAGGATAACAATGGCAACACTGACACAACCATTGCTCCAACCCCCACAACAACTAGTACCACCACCACCGCCGCCACTAGCAGCACAAACACCACCACCGCCAGCACCAACACCACCAATATCAACGCCACTACTGCCAGCACCAACACAACCACCACCACCACCAACAACAACAATAGTGGCAATCTTTCCATAATCTTTGATTCCCAAGAAGAAATCGACAATGACATCTCAGCCTCCATCGATTTTTCCCCATCCCCTCCCTTTTCCGTACCTCCATTTCTCATGACCCAACAAGACCAATTTGATTTCACTTCAGTGCCAACTCAAATCCCACTAGCAGATTCTGTTGTTGAGGGATTTTCACAGTATCCTGCTGACCCTGTACCGCCTCTCATGTCGGCTCCATTGTCATCAGTTTTCGAAGAGGATTGCTTGTCCTCAGTGCCTTCGTATGTGCCTTTGAACCCCTCTTCTCCTTCTTGTTCTTTTCTTGGTCCTACCATGGGAGCATACATGCCTGCTGGGACTATGAATGCTGCAGCATTATCTGCTGACAGCACTGGAATTTTCACCAGCAGTATCCTCATGGCTTCTGAACTGCAACCACAAGATTTGGAATACCAAGGAGATAATGGTGGAATTTTCTGTCCAGAATCATTACCGAGGGGTTTTAACCCTGAAGACCTTCAGATGCTTGGTGCTGAGAGCCAACAACTGGTGAGTGGGGCTGGGAACTCTACTTCTTTACCGACTGAGATTCCCATGGCTGAAGACCCAAATTTTAAAGTAGGGAAGCTATCTGTTGAGGAAAGGAAAGAGAAGATACATAGGTACATGAAGAAAAGGAATGAAAGGAATTTCACAAAGAAAATCAAGTATGCCTGCCGCAAAACTCTTGCAGACAGCAGACCTCGAGTTAGAGGAAGATTTGCGAAGAATGATGATTTTGGAGAGAATCATAGACCTTCTGGTAGCAACCATGAAGACGATGAAGACGATGAAGTAGTTGTGAAAGAGGAAGAAGATATGGTTGATTCCTCGGACATCTTCGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAGCTATCCCATCCAATCCTGGATTTGA

Protein Analysis

442

Amino Acids

48.24

Weight (kDa)

4.32

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 344 - 386 1e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 193, 934
AciI CCGC 5 cut(s) 285, 288, 315, 605, 1105
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 9 cut(s) 42, 66, 74, 112, 203, 783, 858, 997, 1075
AcuI CTGAAG 4 cut(s) 516, 890, 918, 1008
AfaI GTAC 5 cut(s) 211, 274, 489, 603, 1052
AfiI CCNNNNNNNGG 3 cut(s) 193, 722, 934
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 4 cut(s) 48, 135, 682, 1297
AhlI ACTAGT 1 cut(s) 269
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 3 cut(s) 186, 216, 1319
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 2 cut(s) 1015, 1305
AluI AGCT 2 cut(s) 1015, 1305
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 1 cut(s) 1131
ApeKI GCWGC 6 cut(s) 141, 181, 297, 755, 758, 1302
ApoI RAATTY 9 cut(s) 42, 66, 74, 112, 203, 783, 858, 997, 1075
Asp700I GAANNNNTTC 2 cut(s) 903, 1292
AspS9I GGNCC 1 cut(s) 713
AsuHPI GGTGA 2 cut(s) 781, 949
AsuII TTCGAA 2 cut(s) 72, 639
AvaI CYCGRG 1 cut(s) 1131
AvaII GGWCC 1 cut(s) 713
BaeI ACNNNNGTAYC 2 cut(s) 1034, 1067
BbsI GAAGAC 5 cut(s) 120, 906, 996, 1209, 1218
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 6 cut(s) 128, 168, 309, 742, 770, 1314
BccI CCATC 3 cut(s) 464, 478, 1319
BciT130I CCWGG 3 cut(s) 188, 218, 1321
BciVI GTATCC 2 cut(s) 597, 809
BcoDI GTCTC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 3 cut(s) 270, 294, 554
BfmI CTRYAG 2 cut(s) 107, 756
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 2 cut(s) 597, 809
BisI GCNGC 8 cut(s) 142, 182, 288, 298, 756, 759, 1105, 1303
BlsI GCNGC 8 cut(s) 143, 183, 289, 299, 757, 760, 1106, 1304
Bme1390I CCNGG 3 cut(s) 188, 218, 1321
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 1131
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 713
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 3 cut(s) 188, 218, 1321
BmsI GCATC 1 cut(s) 900
BpiI GAAGAC 5 cut(s) 120, 906, 996, 1209, 1218
Bpu14I TTCGAA 2 cut(s) 72, 639
Bsa29I ATCGAT 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 6 cut(s) 186, 720, 841, 881, 981, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 722, 934
Bse1I ACTGG 2 cut(s) 784, 939
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 3 cut(s) 188, 218, 1321
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 6 cut(s) 186, 720, 841, 881, 981, 1257
BseGI GGATG 3 cut(s) 43, 470, 1311
BseLI CCNNNNNNNGG 3 cut(s) 193, 722, 934
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 5 cut(s) 108, 462, 672, 912, 963
BseNI ACTGG 2 cut(s) 784, 939
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 6 cut(s) 128, 168, 309, 742, 770, 1314
BseYI CCCAGC 2 cut(s) 740, 947
BshVI ATCGAT 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 1131
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 3 cut(s) 193, 722, 934
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 757
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 1131
Bsp119I TTCGAA 2 cut(s) 72, 639
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 82
Bsp19I CCATGG 2 cut(s) 720, 981
BspACI CCGC 5 cut(s) 285, 288, 315, 605, 1105
BspCNI CTCAG 5 cut(s) 109, 461, 671, 913, 964
BspDI ATCGAT 1 cut(s) 459
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 1 cut(s) 621
BspMAI CTGCAG 2 cut(s) 111, 760
BspPI GGATC 1 cut(s) 77
BspT104I TTCGAA 2 cut(s) 72, 639
BspTI CTTAAG 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 2 cut(s) 784, 939
BssECI CCNNGG 6 cut(s) 186, 720, 841, 881, 981, 1257
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 3 cut(s) 720, 841, 981
Bst2UI CCWGG 3 cut(s) 188, 218, 1321
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 2 cut(s) 636, 694
BstAFI CTTAAG 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 767
BstBI TTCGAA 2 cut(s) 72, 639
BstC8I GCNNGC 4 cut(s) 319, 355, 738, 1102
BstDEI CTNAG 5 cut(s) 117, 448, 658, 921, 972
BstDSI CCRYGG 2 cut(s) 720, 981
BstF5I GGATG 3 cut(s) 43, 470, 1311
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 350, 767
BstNI CCWGG 3 cut(s) 188, 218, 1321
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 3 cut(s) 186, 216, 1319
BstSFI CTRYAG 2 cut(s) 107, 756
BstV1I GCAGC 6 cut(s) 128, 168, 309, 742, 770, 1314
BstV2I GAAGAC 5 cut(s) 120, 906, 996, 1209, 1218
Bsu15I ATCGAT 1 cut(s) 459
BsuI GTATCC 2 cut(s) 597, 809
BsuTUI ATCGAT 1 cut(s) 459
BtgI CCRYGG 2 cut(s) 720, 981
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 3 cut(s) 43, 470, 1311
BtsIMutI CAGTG 5 cut(s) 234, 540, 666, 777, 1285
Cac8I GCNNGC 4 cut(s) 319, 355, 738, 1102
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 713
ClaI ATCGAT 1 cut(s) 459
Csp6I GTAC 5 cut(s) 210, 273, 488, 602, 1051
CspCI CAANNNNNGTGG 4 cut(s) 376, 411, 813, 848
CviAII CATG 8 cut(s) 502, 613, 721, 733, 805, 982, 1054, 1199
CviQI GTAC 5 cut(s) 210, 273, 488, 602, 1051
DdeI CTNAG 5 cut(s) 117, 448, 658, 921, 972
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraI TTTAAA 1 cut(s) 1003
Eam1104I CTCTTC 2 cut(s) 636, 694
EarI CTCTTC 2 cut(s) 636, 694
Eco130I CCWWGG 3 cut(s) 720, 841, 981
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 713
Eco57I CTGAAG 4 cut(s) 516, 890, 918, 1008
Eco88I CYCGRG 1 cut(s) 1131
EcoRI GAATTC 2 cut(s) 74, 112
EcoRII CCWGG 3 cut(s) 186, 216, 1319
EcoT14I CCWWGG 3 cut(s) 720, 841, 981
ErhI CCWWGG 3 cut(s) 720, 841, 981
FaeI CATG 8 cut(s) 505, 616, 724, 736, 808, 985, 1057, 1202
FaqI GGGAC 1 cut(s) 757
FatI CATG 8 cut(s) 501, 612, 720, 732, 804, 981, 1053, 1198
Fnu4HI GCNGC 8 cut(s) 142, 182, 288, 298, 756, 759, 1105, 1303
FokI GGATG 3 cut(s) 50, 457, 1298
Fsp4HI GCNGC 8 cut(s) 142, 182, 288, 298, 756, 759, 1105, 1303
FspBI CTAG 3 cut(s) 270, 294, 554
GluI GCNGC 8 cut(s) 142, 182, 288, 298, 756, 759, 1105, 1303
GsaI CCCAGC 2 cut(s) 744, 951
Hin1II CATG 8 cut(s) 505, 616, 724, 736, 808, 985, 1057, 1202
HinfI GANTC 7 cut(s) 172, 419, 560, 872, 976, 1174, 1253
HphI GGTGA 2 cut(s) 781, 949
Hpy166II GTNNAC 1 cut(s) 1288
Hpy188I TCNGA 4 cut(s) 118, 814, 909, 1261
Hpy188III TCNNGA 3 cut(s) 86, 502, 869
Hpy8I GTNNAC 1 cut(s) 1288
HpyAV CCTTC 5 cut(s) 675, 705, 914, 1194, 1303
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 5 cut(s) 109, 758, 820, 1118, 1302
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 767
HpyF3I CTNAG 5 cut(s) 117, 448, 658, 921, 972
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 8 cut(s) 505, 616, 724, 736, 808, 985, 1057, 1202
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 256, 625, 725
Lsp1109I GCAGC 6 cut(s) 128, 168, 309, 742, 770, 1314
LweI GCATC 1 cut(s) 900
MaeI CTAG 3 cut(s) 270, 294, 554
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 121, 166
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 278
MroXI GAANNNNTTC 2 cut(s) 903, 1292
MseI TTAA 3 cut(s) 27, 891, 1002
MslI CAYNNNNRTG 2 cut(s) 533, 1278
MspCI CTTAAG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 188, 218, 1321
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 3 cut(s) 188, 218, 1321
MwoI GCNNNNNNNGC 2 cut(s) 350, 767
NcoI CCATGG 2 cut(s) 720, 981
NdeII GATC 1 cut(s) 82
NlaIII CATG 8 cut(s) 505, 616, 724, 736, 808, 985, 1057, 1202
NlaIV GGNNCC 1 cut(s) 621
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 736
NspV TTCGAA 2 cut(s) 72, 639
OliI CACNNNNGTG 1 cut(s) 533
PaeR7I CTCGAG 1 cut(s) 1131
PagI TCATGA 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 1212
PctI GAATGC 1 cut(s) 757
PdmI GAANNNNTTC 2 cut(s) 903, 1292
PfeI GAWTC 7 cut(s) 172, 419, 560, 872, 976, 1174, 1253
PflMI CCANNNNNTGG 2 cut(s) 193, 934
PfoI TCCNGGA 1 cut(s) 1319
PkrI GCNGC 8 cut(s) 143, 183, 289, 299, 757, 760, 1106, 1304
Psp6I CCWGG 3 cut(s) 186, 216, 1319
PspFI CCCAGC 2 cut(s) 740, 947
PspGI CCWGG 3 cut(s) 186, 216, 1319
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 713
PspXI VCTCGAGB 1 cut(s) 1131
PstI CTGCAG 2 cut(s) 111, 760
PstNI CAGNNNCTG 1 cut(s) 563
RsaI GTAC 5 cut(s) 211, 274, 489, 603, 1052
RsaNI GTAC 5 cut(s) 210, 273, 488, 602, 1051
RseI CAYNNNNRTG 2 cut(s) 533, 1278
SaqAI TTAA 3 cut(s) 27, 891, 1002
SatI GCNGC 8 cut(s) 142, 182, 288, 298, 756, 759, 1105, 1303
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 713
ScrFI CCNGG 3 cut(s) 188, 218, 1321
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 1 cut(s) 900
SfcI CTRYAG 2 cut(s) 107, 756
Sfr274I CTCGAG 1 cut(s) 1131
SfuI TTCGAA 2 cut(s) 72, 639
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 1131
SmiMI CAYNNNNRTG 2 cut(s) 533, 1278
SmlI CTYRAG 2 cut(s) 26, 1131
SmoI CTYRAG 2 cut(s) 26, 1131
SpeI ACTAGT 1 cut(s) 269
SsiI CCGC 5 cut(s) 285, 288, 315, 605, 1105
SspMI CTAG 3 cut(s) 270, 294, 554
StyD4I CCNGG 3 cut(s) 186, 216, 1319
StyI CCWWGG 3 cut(s) 720, 841, 981
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 128
TaqI TCGA 5 cut(s) 72, 435, 459, 639, 1132
TauI GCSGC 2 cut(s) 290, 1107
TfiI GAWTC 7 cut(s) 172, 419, 560, 872, 976, 1174, 1253
Tru1I TTAA 3 cut(s) 27, 891, 1002
Tru9I TTAA 3 cut(s) 27, 891, 1002
TscAI CASTG 5 cut(s) 241, 540, 666, 784, 1285
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 6 cut(s) 141, 181, 297, 755, 758, 1302
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 9 cut(s) 17, 54, 165, 764, 1070, 1083, 1215, 1224, 1233
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 5 cut(s) 241, 540, 666, 784, 1285
Van91I CCANNNNNTGG 2 cut(s) 193, 934
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 713
XapI RAATTY 9 cut(s) 42, 66, 74, 112, 203, 783, 858, 997, 1075
XceI RCATGY 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 2 cut(s) 224, 848
XhoI CTCGAG 1 cut(s) 1131
XmnI GAANNNNTTC 2 cut(s) 903, 1292
XspI CTAG 3 cut(s) 270, 294, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.