Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005795

Physical Location & Seq

Genomic Coordinates Reverse (-)

15499326 .. 15501109

Gene Structure 1784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCCATTAGCAGATTCTGTTGTTGAGGGATTTTCACAGTACCCTGCCGAACCTGTACCACCTCTTATGACAGCTTCATTAGCATCGGTTTTTGAAGAGGATTGCTTGTCTTCAGTGCCTTCTTATGTTCCTTTGAACCCTTCTTCTCCTCCTTGTTCATTTCTCGGTCCTCCTATGGGACCATACATGCCTACTGGGTCTATAAATCCTGCTTCACTATCTGCTGACAACACTGGAATTTTCACGAGCAGCATTCTTATGGCTTCTGAATTGCAACAGCAAGACTTGGAATATCAAGGAGACAATGGTGGATTTTTCTGTCTAGATTCATTATCGAGGATTTTTAATCCCGAAGAGCTTCAGGCACTTAGTGCTGAGAATCAGCAACTGGTGAGTGGGGCAGGGAACTCTACTTCTTTACCAACTGAGATTTCGATAGCTGAAGACCCAAATTTTAAAGTAGGAAAGCTCTCTGTTGAAGAGAGGAAAGAGAAGATCCACAGGTACATGAAGAAAAGGAATGAGAGGAACTTCACCAAGAAAATCAAGTATGCCTGCCGCAAAACACTTGCTGACAGCAGACCTCGAGTCCGAGGAAGATTTGCAAAGAACGATGACTTTGGAGAGACCCATAGACCTGCGGGAAGCAATCATGAAGACGATGAAGTAGTTGTGAAAGAGGAAGAGGATTTGGTTGATTCCTCAGACATCTTTGCTCATATCAGTGGAGTGAACTCTTTCAAATGCAGCTACCCAATCCAGTCCTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009909 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

258

Amino Acids

28.29

Weight (kDa)

4.84

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04500 AT1G04500 AT1G04500 AT1G04500 AT2G33350 AT2G33350 AT2G33350 AT2G33350 AT2G33350
fragaria_vesca	FvH4_4g04500 FvH4_4g04500
malus_domestica	MD13G1220700.v1.1 MD16G1225800.v1.1
prunus_persica	Prupe.1G047400_v2.0.a1 Prupe.1G047400_v2.0.a1
pyrus_communis	pycom13g19510 pycom16g18880
rosa_chinensis	RchiOBHm_Chr4g0395281
rosa_laevigata	RLG00000009637
rosa_multiflora	Rmu_sc0003703.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340150
rosa_rugosa	Rorug03G0358400 Rorug03G0358500
rosa_samantha	Rh4AG057900 Rh4BG056600 Rh4CG062700 Rh4DG053500
rosa_wichuraiana	Rw4G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	646
AciI	CCGC	2 cut(s)	559, 641
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	237, 451
AcuI	CTGAAG	3 cut(s)	96, 344, 462
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	3 cut(s)	41, 57, 506
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	95, 136, 479, 742
AhdI	GACNNNNNGTC	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	764
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	5 cut(s)	74, 358, 440, 469, 750
AluI	AGCT	5 cut(s)	74, 358, 440, 469, 750
Alw26I	GTCTC	2 cut(s)	294, 620
AlwI	GGATC	1 cut(s)	490
AlwNI	CAGNNNCTG	2 cut(s)	17, 388
Ama87I	CYCGRG	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	249, 747
ApoI	RAATTY	2 cut(s)	237, 451
Asp700I	GAANNNNTTC	2 cut(s)	357, 737
AspS9I	GGNCC	2 cut(s)	167, 179
AsuHPI	GGTGA	2 cut(s)	403, 526
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	2 cut(s)	167, 179
BauI	CACGAG	1 cut(s)	244
BbsI	GAAGAC	3 cut(s)	102, 450, 663
BbvI	GCAGC	2 cut(s)	261, 759
BciT130I	CCWGG	1 cut(s)	766
BcoDI	GTCTC	2 cut(s)	294, 620
BfaI	CTAG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	646
BisI	GCNGC	3 cut(s)	250, 559, 748
BlsI	GCNGC	3 cut(s)	251, 560, 749
Bme1390I	CCNGG	1 cut(s)	766
Bme18I	GGWCC	2 cut(s)	167, 179
BmeRI	GACNNNNNGTC	1 cut(s)	587
BmeT110I	CYCGRG	1 cut(s)	585
BmgT120I	GGNCC	2 cut(s)	167, 179
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	766
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	92
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	3 cut(s)	102, 450, 663
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	4 cut(s)	199, 238, 393, 760
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	592
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	3 cut(s)	366, 417, 717
BseNI	ACTGG	4 cut(s)	199, 238, 393, 760
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	261, 759
BsiHKCI	CYCGRG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	294, 620
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	585
Bsp143I	GATC	1 cut(s)	495
BspACI	CCGC	2 cut(s)	559, 641
BspCNI	CTCAG	3 cut(s)	367, 418, 716
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	620
BsrI	ACTGG	4 cut(s)	199, 238, 393, 760
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	1 cut(s)	495
BssSI	CACGAG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	4 cut(s)	90, 348, 474, 678
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	4 cut(s)	368, 375, 426, 703
BstKTI	GATC	1 cut(s)	498
BstMAI	GTCTC	2 cut(s)	294, 620
BstMBI	GATC	1 cut(s)	495
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 371
BstNI	CCWGG	1 cut(s)	766
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	764
BstV1I	GCAGC	2 cut(s)	261, 759
BstV2I	GAAGAC	3 cut(s)	102, 450, 663
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BtsIMutI	CAGTG	3 cut(s)	120, 231, 730
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	2 cut(s)	17, 388
CciI	TCATGA	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	167, 179
Csp6I	GTAC	3 cut(s)	40, 56, 505
CviAII	CATG	3 cut(s)	187, 508, 653
CviJI	RGCY	6 cut(s)	74, 263, 358, 440, 469, 750
CviKI_1	RGCY	6 cut(s)	74, 263, 358, 440, 469, 750
CviQI	GTAC	3 cut(s)	40, 56, 505
DdeI	CTNAG	4 cut(s)	368, 375, 426, 703
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
DraI	TTTAAA	1 cut(s)	457
DraIII	CACNNNGTG	1 cut(s)	371
DriI	GACNNNNNGTC	1 cut(s)	587
Eam1104I	CTCTTC	4 cut(s)	90, 348, 474, 678
Eam1105I	GACNNNNNGTC	1 cut(s)	587
EarI	CTCTTC	4 cut(s)	90, 348, 474, 678
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	167, 179
Eco57I	CTGAAG	3 cut(s)	96, 344, 462
Eco88I	CYCGRG	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	764
FaeI	CATG	3 cut(s)	190, 511, 656
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	186, 507, 652
FauI	CCCGC	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	250, 559, 748
Fsp4HI	GCNGC	3 cut(s)	250, 559, 748
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	3 cut(s)	250, 559, 748
Hin1II	CATG	3 cut(s)	190, 511, 656
HinfI	GANTC	5 cut(s)	14, 326, 379, 588, 698
HphI	GGTGA	2 cut(s)	403, 526
Hpy166II	GTNNAC	1 cut(s)	733
Hpy188I	TCNGA	3 cut(s)	268, 593, 706
Hpy188III	TCNNGA	4 cut(s)	244, 323, 350, 653
Hpy8I	GTNNAC	1 cut(s)	733
HpyAV	CCTTC	2 cut(s)	129, 150
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	274, 605, 747
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 371
HpyF3I	CTNAG	4 cut(s)	368, 375, 426, 703
Hsp92II	CATG	3 cut(s)	190, 511, 656
Kzo9I	GATC	1 cut(s)	495
LguI	GCTCTTC	1 cut(s)	348
Lsp1109I	GCAGC	2 cut(s)	261, 759
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	323
MalI	GATC	1 cut(s)	497
MboI	GATC	1 cut(s)	495
MflI	RGATCY	1 cut(s)	495
MluCI	AATT	3 cut(s)	237, 269, 451
MlyI	GAGTC	1 cut(s)	597
MroXI	GAANNNNTTC	2 cut(s)	357, 737
MseI	TTAA	2 cut(s)	345, 456
MslI	CAYNNNNRTG	2 cut(s)	257, 723
MspR9I	CCNGG	1 cut(s)	766
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	766
MwoI	GCNNNNNNNGC	2 cut(s)	80, 371
NdeII	GATC	1 cut(s)	495
NlaIII	CATG	3 cut(s)	190, 511, 656
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	585
PagI	TCATGA	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	357, 737
PfeI	GAWTC	4 cut(s)	14, 326, 379, 698
PfoI	TCCNGGA	1 cut(s)	764
PkrI	GCNGC	3 cut(s)	251, 560, 749
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	2 cut(s)	167, 179
PspXI	VCTCGAGB	1 cut(s)	585
PstNI	CAGNNNCTG	2 cut(s)	17, 388
PsuI	RGATCY	1 cut(s)	495
RsaI	GTAC	3 cut(s)	41, 57, 506
RsaNI	GTAC	3 cut(s)	40, 56, 505
RseI	CAYNNNNRTG	2 cut(s)	257, 723
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	345, 456
SatI	GCNGC	3 cut(s)	250, 559, 748
Sau3AI	GATC	1 cut(s)	495
Sau96I	GGNCC	2 cut(s)	167, 179
SchI	GAGTC	1 cut(s)	597
ScrFI	CCNGG	1 cut(s)	766
SfaNI	GCATC	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	585
SinI	GGWCC	2 cut(s)	167, 179
SlaI	CTCGAG	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	257, 723
SmlI	CTYRAG	1 cut(s)	585
SmoI	CTYRAG	1 cut(s)	585
Sse9I	AATT	3 cut(s)	237, 269, 451
SsiI	CCGC	2 cut(s)	559, 641
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	764
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	335, 434, 586
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	3 cut(s)	237, 269, 451
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	4 cut(s)	14, 326, 379, 698
Tru1I	TTAA	2 cut(s)	345, 456
Tru9I	TTAA	2 cut(s)	345, 456
TscAI	CASTG	3 cut(s)	120, 238, 730
TseI	GCWGC	2 cut(s)	249, 747
TspDTI	ATGAA	6 cut(s)	66, 147, 318, 524, 669, 678
TspRI	CASTG	3 cut(s)	120, 238, 730
VpaK11BI	GGWCC	2 cut(s)	167, 179
XapI	RAATTY	2 cut(s)	237, 451
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	762
XhoI	CTCGAG	1 cut(s)	585
XmnI	GAANNNNTTC	2 cut(s)	357, 737
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.