Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Forward (+)

1240294 .. 1242157

Gene Structure 1864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCGTGGTGTGTCAGAATTGGAGGTGGGGAAGAGTAATCTTCCGGCGGAGAGTGAGCTGGAATTGGGATTAGGGCTCAGCCTCGGTGGTGGCGCGTGGAAAGAGCGTGGGAGGATTCTTACTGCTAAGGATTTTCCTTCCGTTGGGTCTAAACGCTCTGCTGAATCTTCCTCTCACCAAGGAGCTTCTCCTCCTCGTTCAAGTCAAGTGGTAGGATGGCCACCAATTGGGTTACACAGGATGAACAGTTTGGTTAATAACCAAGCTATGAAGGCAGCAAGAGCGGAAGAAGGAGACGGGGAGAAGAAAGTTGTGAAGAATGATGAGCTCAAAGATGTGTCAATGAAGGTGAATCCGAAAGTTCAGGGCTTAGGGTTTGTTAAGGTGAATATGGATGGAGTTGGTATAGGCAGAAAAGTGGATATGAGAGCTCATTCGTCTTACGAAAACTTGGCTCAGACGCTTGAGGAAATGTTCTTTGGAATGACAGGTCTGTACTGTTTTCAAATGCGTACACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

173

Amino Acids

18.74

Weight (kDa)

9.04

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	53 - 164	5.4e-25	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	284
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	47, 284
AcoI	YGGCCR	1 cut(s)	218
AfaI	GTAC	2 cut(s)	497, 514
AfiI	CCNNNNNNNGG	2 cut(s)	143, 227
AgsI	TTSAA	2 cut(s)	201, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	5 cut(s)	58, 185, 266, 328, 431
AluI	AGCT	5 cut(s)	58, 185, 266, 328, 431
Alw21I	GWGCWC	2 cut(s)	330, 433
Alw26I	GTCTC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	167, 361, 397
BalI	TGGCCA	1 cut(s)	220
BanII	GRGCYC	3 cut(s)	78, 330, 433
Bbv12I	GWGCWC	2 cut(s)	330, 433
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	210, 389
BcoDI	GTCTC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	276
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	277
Bpu10I	CCTNAGC	2 cut(s)	126, 370
Bpu1102I	GCTNAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	485
BsaJI	CCNNGG	2 cut(s)	82, 178
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 227
BseDI	CCNNGG	2 cut(s)	82, 178
BseGI	GGATG	3 cut(s)	221, 246, 400
BseLI	CCNNNNNNNGG	2 cut(s)	143, 227
BseMII	CTCAG	2 cut(s)	91, 470
BseRI	GAGGAG	2 cut(s)	180, 183
BseXI	GCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	330, 433
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	143, 227
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	3 cut(s)	78, 330, 433
Bsp1720I	GCTNAGC	1 cut(s)	77
BspACI	CCGC	2 cut(s)	47, 284
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	2 cut(s)	90, 469
BspFNI	CGCG	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	82, 178
BssT1I	CCWWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	248, 500
Bst6I	CTCTTC	1 cut(s)	26
BstDEI	CTNAG	4 cut(s)	77, 126, 370, 456
BstF5I	GGATG	3 cut(s)	221, 246, 400
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	221, 246, 400
CfoI	GCGC	1 cut(s)	95
CseI	GACGC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	496, 513
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviQI	GTAC	2 cut(s)	496, 513
DdeI	CTNAG	4 cut(s)	77, 126, 370, 456
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	2 cut(s)	328, 431
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	3 cut(s)	78, 330, 433
Eco53kI	GAGCTC	2 cut(s)	328, 431
EcoICRI	GAGCTC	2 cut(s)	328, 431
EcoT14I	CCWWGG	1 cut(s)	178
EcoT38I	GRGCYC	3 cut(s)	78, 330, 433
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	288
FaiI	YATR	5 cut(s)	269, 392, 407, 425, 520
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	3 cut(s)	228, 253, 407
FriOI	GRGCYC	3 cut(s)	78, 330, 433
Fsp4HI	GCNGC	1 cut(s)	276
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	469
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	3 cut(s)	115, 164, 352
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	167, 361, 397
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	3 cut(s)	16, 357, 459
Hpy8I	GTNNAC	1 cut(s)	515
HpyAV	CCTTC	4 cut(s)	147, 265, 284, 340
HpyCH4III	ACNGT	2 cut(s)	248, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
HpyF3I	CTNAG	4 cut(s)	77, 126, 370, 456
HspAI	GCGC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	5 cut(s)	44, 57, 223, 350, 474
Lsp1109I	GCAGC	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	231
MbiI	CCGCTC	1 cut(s)	284
MboII	GAAGA	6 cut(s)	32, 43, 159, 299, 316, 328
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	3 cut(s)	78, 330, 433
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	3 cut(s)	17, 62, 225
MluNI	TGGCCA	1 cut(s)	220
MnlI	CCTC	7 cut(s)	16, 92, 105, 181, 201, 204, 460
Mox20I	TGGCCA	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	2 cut(s)	255, 381
Msp20I	TGGCCA	1 cut(s)	220
MspI	CCGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
PfeI	GAWTC	3 cut(s)	115, 164, 352
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	277
Psp124BI	GAGCTC	2 cut(s)	330, 433
RsaI	GTAC	2 cut(s)	497, 514
RsaNI	GTAC	2 cut(s)	496, 513
SacI	GAGCTC	2 cut(s)	330, 433
SaqAI	TTAA	2 cut(s)	255, 381
SatI	GCNGC	1 cut(s)	276
SduI	GDGCHC	3 cut(s)	78, 330, 433
SetI	ASST	9 cut(s)	27, 60, 187, 268, 330, 351, 387, 433, 493
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	3 cut(s)	17, 62, 225
SsiI	CCGC	2 cut(s)	47, 284
SstI	GAGCTC	2 cut(s)	330, 433
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	248, 500
TasI	AATT	3 cut(s)	17, 62, 225
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	3 cut(s)	115, 164, 352
Tru1I	TTAA	2 cut(s)	255, 381
Tru9I	TTAA	2 cut(s)	255, 381
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	257, 284, 359
TspGWI	ACGGA	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.