AT2G33310

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006010
Physical Location & Seq
Reverse (-)
14113025 .. 14116089
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33310.3

Sequence Viewer

Length: 741 bp
ATGATTACTGAACTTGAGATGGGGAAAGGTGAGAGTGAGCTTGAGCTTGGTCTAGGGCTGAGTCTTGGCGGTGGAACGGCGGCCAAGATTGGTAAATCAGGTGGTGGTGGCGCGTGGGGAGAGCGTGGAAGGCTTTTGACGGCTAAGGATTTTCCTTCTGTTGGTTCTAAACGTGCTGCTGATTCTGCTTCTCATGCTGGTTCATCTCCTCCTCGTTCAAGTCAAGTTGTTGGATGGCCTCCTATAGGGTCACACAGGATGAACAGTTTGGTTAATAACCAAGCTACAAAGTCAGCAAGAGAAGAAGAAGAAGCTGGTAAGAAGAAAGTGAAAGATGATGAACCTAAAGATGTGACAAAGAAAGTGAATGGGAAAGTACAAGTTGGATTTATTAAGGTGAACATGGATGGAGTTGCTATAGGAAGAAAAGTGGATTTGAATGCTCATTCTTCTTACGAGAATTTGGCGCAAACATTGGAAGATATGTTCTTTCGCACTAATCCGGGTACTGTCGGGTTAACCAGTCAGTTCACTAAACCGTTGAGGCTTTTAGATGGATCGTCTGAGTTTGTACTTACTTATGAAGATAAGGAAGGAGATTGGATGCTTGTTGGTGATGTTCCATGGAGAATGTTCATCAACTCGGTGAAAAGGCTACGTGTGATGAAAACCTCTGAAGCTAATGGACTCGCTGCACGAAATCAAGAACCAAACGAGAGACAGCGAAAGCAGCCGGTTTAG

Protein Analysis

246

Amino Acids

26.64

Weight (kDa)

9.32

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 60 - 233 1.3e-58 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AciI CCGC 2 cut(s) 69, 80
AclWI GGATC 1 cut(s) 565
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 696
AfaI GTAC 3 cut(s) 378, 508, 573
AfiI CCNNNNNNNGG 2 cut(s) 161, 245
AflIII ACRYGT 1 cut(s) 658
AgsI TTSAA 2 cut(s) 219, 439
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 5 cut(s) 40, 46, 284, 314, 680
AluI AGCT 5 cut(s) 40, 46, 284, 314, 680
Alw26I GTCTC 1 cut(s) 712
AlwI GGATC 1 cut(s) 565
AoxI GGCC 2 cut(s) 81, 236
ApeKI GCWGC 3 cut(s) 176, 692, 730
ApoI RAATTY 1 cut(s) 460
AspLEI GCGC 2 cut(s) 113, 469
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 4 cut(s) 41, 409, 626, 658
BbvI GCAGC 2 cut(s) 163, 679
BccI CCATC 4 cut(s) 13, 228, 401, 548
BceAI ACGGC 2 cut(s) 93, 156
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 712
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 2 cut(s) 243, 417
BisI GCNGC 4 cut(s) 81, 177, 693, 731
BlsI GCNGC 4 cut(s) 82, 178, 694, 732
Bme1390I CCNGG 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 504
BmsI GCATC 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 2 cut(s) 35, 62
BpuMI CCSGG 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 659
BsaJI CCNNGG 1 cut(s) 623
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 245
Bse118I RCCGGY 1 cut(s) 733
Bse1I ACTGG 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 4 cut(s) 239, 264, 412, 609
BseLI CCNNNNNNNGG 2 cut(s) 161, 245
BseMII CTCAG 2 cut(s) 50, 555
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 2 cut(s) 198, 201
BseXI GCAGC 2 cut(s) 163, 679
BsgI GTGCAG 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 83, 238
BsiSI CCGG 2 cut(s) 503, 734
BslI CCNNNNNNNGG 2 cut(s) 161, 245
BsmAI GTCTC 1 cut(s) 712
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 2 cut(s) 83, 238
Bsp143I GATC 1 cut(s) 557
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 2 cut(s) 69, 80
BspANI GGCC 2 cut(s) 83, 238
BspCNI CTCAG 2 cut(s) 51, 556
BspFNI CGCG 1 cut(s) 113
BspPI GGATC 1 cut(s) 565
BsrFI RCCGGY 1 cut(s) 733
BsrI ACTGG 1 cut(s) 522
BssAI RCCGGY 1 cut(s) 733
BssECI CCNNGG 1 cut(s) 623
BssMI GATC 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 623
Bst4CI ACNGT 3 cut(s) 266, 511, 540
BstBAI YACGTR 1 cut(s) 659
BstDEI CTNAG 3 cut(s) 59, 144, 564
BstDSI CCRYGG 1 cut(s) 623
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 4 cut(s) 239, 264, 412, 609
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 2 cut(s) 113, 469
BstKTI GATC 1 cut(s) 560
BstMAI GTCTC 1 cut(s) 712
BstMBI GATC 1 cut(s) 557
BstMWI GCNNNNNNNGC 4 cut(s) 130, 185, 194, 730
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 2 cut(s) 243, 417
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 163, 679
BsuRI GGCC 2 cut(s) 83, 238
BtgI CCRYGG 1 cut(s) 623
BtsCI GGATG 4 cut(s) 239, 264, 412, 609
CfoI GCGC 2 cut(s) 113, 469
Cfr10I RCCGGY 1 cut(s) 733
Csp6I GTAC 3 cut(s) 377, 507, 572
CviAII CATG 3 cut(s) 194, 403, 624
CviQI GTAC 3 cut(s) 377, 507, 572
DdeI CTNAG 3 cut(s) 59, 144, 564
DpnI GATC 1 cut(s) 559
DpnII GATC 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 696
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 623
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 3 cut(s) 197, 406, 627
FaiI YATR 7 cut(s) 195, 245, 404, 419, 485, 582, 625
FatI CATG 3 cut(s) 193, 402, 623
Fnu4HI GCNGC 4 cut(s) 81, 177, 693, 731
FokI GGATG 4 cut(s) 246, 271, 419, 616
Fsp4HI GCNGC 4 cut(s) 81, 177, 693, 731
FspBI CTAG 1 cut(s) 53
GlaI GCGC 2 cut(s) 112, 468
GluI GCNGC 4 cut(s) 81, 177, 693, 731
HaeIII GGCC 2 cut(s) 83, 238
HapII CCGG 2 cut(s) 503, 734
HhaI GCGC 2 cut(s) 113, 469
Hin1II CATG 3 cut(s) 197, 406, 627
Hin6I GCGC 2 cut(s) 111, 467
HinP1I GCGC 2 cut(s) 111, 467
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 3 cut(s) 61, 182, 687
HpaI GTTAAC 1 cut(s) 519
HpaII CCGG 2 cut(s) 503, 734
HphI GGTGA 4 cut(s) 41, 409, 626, 658
Hpy166II GTNNAC 3 cut(s) 400, 519, 531
Hpy188I TCNGA 2 cut(s) 565, 676
Hpy188III TCNNGA 1 cut(s) 704
Hpy8I GTNNAC 3 cut(s) 400, 519, 531
HpyAV CCTTC 3 cut(s) 123, 165, 587
HpyCH4III ACNGT 3 cut(s) 266, 511, 540
HpyCH4IV ACGT 2 cut(s) 172, 658
HpyCH4V TGCA 1 cut(s) 695
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 185, 194, 730
HpyF3I CTNAG 3 cut(s) 59, 144, 564
HpySE526I ACGT 2 cut(s) 172, 658
Hsp92II CATG 3 cut(s) 197, 406, 627
HspAI GCGC 2 cut(s) 111, 467
KspAI GTTAAC 1 cut(s) 519
Kzo9I GATC 1 cut(s) 557
LpnPI CCDG 6 cut(s) 84, 183, 241, 300, 516, 535
Lsp1109I GCAGC 2 cut(s) 163, 679
LweI GCATC 1 cut(s) 594
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 172, 658
MaeIII GTNAC 2 cut(s) 249, 352
MalI GATC 1 cut(s) 559
MboI GATC 1 cut(s) 557
MboII GAAGA 8 cut(s) 314, 317, 320, 334, 435, 441, 491, 596
MluCI AATT 1 cut(s) 460
MlyI GAGTC 2 cut(s) 70, 681
MmeI TCCRAC 2 cut(s) 211, 364
MnlI CCTC 5 cut(s) 219, 222, 249, 537, 682
MseI TTAA 3 cut(s) 273, 393, 518
MspI CCGG 2 cut(s) 503, 734
MspR9I CCNGG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 445
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 130, 185, 194, 730
NciI CCSGG 1 cut(s) 504
NcoI CCATGG 1 cut(s) 623
NdeII GATC 1 cut(s) 557
NlaIII CATG 3 cut(s) 197, 406, 627
NmuCI GTSAC 2 cut(s) 249, 352
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 4 cut(s) 82, 178, 694, 732
PleI GAGTC 2 cut(s) 69, 681
PpsI GAGTC 2 cut(s) 69, 681
Ppu21I YACGTR 1 cut(s) 659
RsaI GTAC 3 cut(s) 378, 508, 573
RsaNI GTAC 3 cut(s) 377, 507, 572
SaqAI TTAA 3 cut(s) 273, 393, 518
SatI GCNGC 4 cut(s) 81, 177, 693, 731
Sau3AI GATC 1 cut(s) 557
SchI GAGTC 2 cut(s) 70, 681
ScrFI CCNGG 1 cut(s) 504
SfaNI GCATC 1 cut(s) 594
SfcI CTRYAG 2 cut(s) 243, 417
SmlI CTYRAG 2 cut(s) 14, 41
SmoI CTYRAG 2 cut(s) 14, 41
Sse9I AATT 1 cut(s) 460
SsiI CCGC 2 cut(s) 69, 80
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 502
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 3 cut(s) 266, 511, 540
TaiI ACGT 2 cut(s) 175, 661
TasI AATT 1 cut(s) 460
TatI WGTACW 2 cut(s) 376, 571
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 3 cut(s) 273, 393, 518
Tru9I TTAA 3 cut(s) 273, 393, 518
TseFI GTSAC 2 cut(s) 249, 352
TseI GCWGC 3 cut(s) 176, 692, 730
Tsp45I GTSAC 2 cut(s) 249, 352
TspDTI ATGAA 6 cut(s) 192, 275, 354, 597, 625, 680
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 460
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.