Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Reverse (-)

55438438 .. 55440997

Gene Structure 2560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAAGGCACTCTGGGATTACTTGGAGGTGGGTCTTCTGGGTGCTCAACAAATGAGTCAGCAATGTCAAAGGTGGAACAACAGGTGGTGGAGCAAGACTATGTGGGTATGTCCTCTGAGGTATCTTCATACCCAGCTGAAACTGAGCTTGAACTGGGCCTGAGCCTGGGTGGTGGTGGTGGTTCTGCGCAGAAGTCCAAAGCCTGTGCATGGGGCGAGCGTGGAAGAATCTTGACTGCTAAAGACTTCCCTTCCATGGTGTCTCATGGGTCTGCAAGATTCTCACAGAGAGCAAATAATGCCTCTTCTGTTTCTGGAAATAAGAGGGCTGCTGAAGAGGGTGGATCTCCCACTGCTGTAAGTCAAGTTGTGGGATGGCCACCTATAAGTGCTGCAAGGATGAACAGCTTGGTTAACCAGGCAAAGACTGCAAGGTCTGAAGATGACAAGGCAGATGGGGACAAATCTAAGGACACTTACAAGAAGAAAATCAACACTGGTAATAAGTCAACTGTGAAAGAGAAAGGGCATCAGGGATTTGTGAAGGTCAACATGGATGGAATTCCTATAGGGAGGAAAGTGGATTTAAATGCTCACACTTGCTATGAGACTTTAGCTGAAACACTAGAGGACATGTTCTTCAGCACCACTACAACTGGCAATTCAATCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

225

Amino Acids

23.45

Weight (kDa)

6.33

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	47 - 218	3.9e-29	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	433
Acc16I	TGCGCA	1 cut(s)	189
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	3 cut(s)	354, 459, 625
AfiI	CCNNNNNNNGG	3 cut(s)	166, 210, 256
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	2 cut(s)	152, 666
AjnI	CCWGG	2 cut(s)	165, 417
AluBI	AGCT	4 cut(s)	137, 148, 408, 617
AluI	AGCT	4 cut(s)	137, 148, 408, 617
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	2 cut(s)	267, 602
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	2 cut(s)	157, 377
ApeKI	GCWGC	2 cut(s)	329, 392
ApoI	RAATTY	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	316, 379
BccI	CCATC	3 cut(s)	369, 449, 551
BcgI	CGANNNNNNTGC	1 cut(s)	649
BciT130I	CCWGG	2 cut(s)	167, 419
BcoDI	GTCTC	2 cut(s)	267, 602
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	2 cut(s)	330, 393
BlsI	GCNGC	2 cut(s)	331, 394
Bme1390I	CCNGG	2 cut(s)	167, 419
BmgT120I	GGNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	167, 419
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	538
BmuI	ACTGGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	166, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 210, 256
Bse1I	ACTGG	3 cut(s)	159, 502, 661
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	167, 419
BseDI	CCNNGG	2 cut(s)	166, 255
BseGI	GGATG	3 cut(s)	380, 405, 562
BseLI	CCNNNNNNNGG	3 cut(s)	166, 210, 256
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	108, 135, 152
BseNI	ACTGG	3 cut(s)	159, 502, 661
BseXI	GCAGC	2 cut(s)	316, 379
BseYI	CCCAGC	1 cut(s)	133
BshFI	GGCC	2 cut(s)	159, 379
BsiHKAI	GWGCWC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	3 cut(s)	166, 210, 256
BsmAI	GTCTC	2 cut(s)	267, 602
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	159, 379
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	344
Bsp19I	CCATGG	1 cut(s)	255
BspANI	GGCC	2 cut(s)	159, 379
BspCNI	CTCAG	3 cut(s)	109, 136, 153
BspPI	GGATC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	159, 502, 661
BssECI	CCNNGG	2 cut(s)	166, 255
BssMI	GATC	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	167, 419
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	2 cut(s)	310, 330
BstAPI	GCANNNNNTGC	2 cut(s)	299, 428
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	117, 144, 161, 468
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	380, 405, 562
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	347
BstMAI	GTCTC	2 cut(s)	267, 602
BstMBI	GATC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 428
BstNI	CCWGG	2 cut(s)	167, 419
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	165, 417
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	316, 379
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	159, 379
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	380, 405, 562
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 495
Cac8I	GCNNGC	1 cut(s)	218
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	157
CviAII	CATG	5 cut(s)	210, 256, 266, 553, 634
CviJI	RGCY	9 cut(s)	137, 148, 159, 165, 203, 329, 379, 408, 617
CviKI_1	RGCY	9 cut(s)	137, 148, 159, 165, 203, 329, 379, 408, 617
DdeI	CTNAG	4 cut(s)	117, 144, 161, 468
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
DraI	TTTAAA	1 cut(s)	588
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	310, 330
EarI	CTCTTC	2 cut(s)	310, 330
Eco130I	CCWWGG	1 cut(s)	255
Eco57I	CTGAAG	3 cut(s)	354, 459, 625
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	165, 417
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	5 cut(s)	213, 259, 269, 556, 637
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	5 cut(s)	209, 255, 265, 552, 633
Fnu4HI	GCNGC	2 cut(s)	330, 393
FokI	GGATG	3 cut(s)	387, 412, 569
Fsp4HI	GCNGC	2 cut(s)	330, 393
FspBI	CTAG	1 cut(s)	626
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	2 cut(s)	330, 393
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	159, 379
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	5 cut(s)	213, 259, 269, 556, 637
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	3 cut(s)	415, 510, 550
HindII	GTYRAC	3 cut(s)	415, 510, 550
HinfI	GANTC	3 cut(s)	56, 228, 279
HpaI	GTTAAC	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	415, 510, 550
Hpy188I	TCNGA	2 cut(s)	118, 439
Hpy188III	TCNNGA	2 cut(s)	232, 315
Hpy8I	GTNNAC	3 cut(s)	415, 510, 550
HpyAV	CCTTC	2 cut(s)	261, 538
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	4 cut(s)	209, 275, 395, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 428
HpyF3I	CTNAG	4 cut(s)	117, 144, 161, 468
Hsp92II	CATG	5 cut(s)	213, 259, 269, 556, 637
HspAI	GCGC	1 cut(s)	188
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	2 cut(s)	316, 379
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	1 cut(s)	626
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MboII	GAAGA	8 cut(s)	27, 117, 237, 297, 347, 452, 496, 631
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	379
MluCI	AATT	2 cut(s)	561, 661
MluNI	TGGCCA	1 cut(s)	379
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	20, 112, 124, 313, 318, 331, 567, 622
Mox20I	TGGCCA	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	379
MseI	TTAA	2 cut(s)	414, 587
Msp20I	TGGCCA	1 cut(s)	379
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	167, 419
MvaI	CCWGG	2 cut(s)	167, 419
MwoI	GCNNNNNNNGC	2 cut(s)	299, 428
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	344
NlaIII	CATG	5 cut(s)	213, 259, 269, 556, 637
NsbI	TGCGCA	1 cut(s)	189
NspI	RCATGY	1 cut(s)	637
PciI	ACATGT	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	228, 279
PkrI	GCNGC	2 cut(s)	331, 394
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	165, 417
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	165, 417
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	414, 587
SatI	GCNGC	2 cut(s)	330, 393
Sau3AI	GATC	1 cut(s)	344
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	167, 419
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	1 cut(s)	567
SmiI	ATTTAAAT	1 cut(s)	588
Sse9I	AATT	2 cut(s)	561, 661
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	2 cut(s)	165, 417
StyI	CCWWGG	1 cut(s)	255
SwaI	ATTTAAAT	1 cut(s)	588
TaaI	ACNGT	1 cut(s)	514
TasI	AATT	2 cut(s)	561, 661
TfiI	GAWTC	2 cut(s)	228, 279
Tru1I	TTAA	2 cut(s)	414, 587
Tru9I	TTAA	2 cut(s)	414, 587
TscAI	CASTG	2 cut(s)	358, 502
TseI	GCWGC	2 cut(s)	329, 392
TspDTI	ATGAA	2 cut(s)	117, 416
TspRI	CASTG	2 cut(s)	358, 502
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	1 cut(s)	637
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.