Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006010

Physical Location & Seq

Genomic Coordinates Reverse (-)

13122392 .. 13126301

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCGCACTAGCAGACATTTGGGTCCCAACATCATCACTCTCTCCACCATCTCTCCTAACCTACCTCTTTGCTTTGCTTCTGCCTCCTTCATTTTCATTCTTGTCTATTCCTTCCCTTTCCCTTCCTCCTATACTACTACTACTTCTCAAACTCCCACATTTCTCAAATCGAAGAAACCCCATCTCTCTCTCTTTCTCTCGCAACTCCCAACTTCTTCAACCTGTCTAGAAATCTCTCTTCTGGTTTTAATGGAAGGCACTCTGGGATTACTTGGAGGTGGGTCTTCTGGGTGCTCAACAAATGAGTCAGCAATGTCAAAGGTGGAACAACAGGTGGTGGAGCAAGACTATGTGGGCATGTCCTCTGAGGTATCTTCATACCCAGCTGAAACTGAGCTTGAACTGGGCCTGAGCCTGGGTGGTGGTGGTTCTGCACAGAAGTCCAAAGCCTGTGCATGGGGCGAGCGTGGAAGAATCTTGACTGCTAAAGACTTCCCTTCCATGGTGTCTCATGAGTCTGCAAGATTCTCACAGAGAGCAAATAATGCTTCTTCTGTTTCTGGAAATAAGAGGGCTGCTGAAGAGGGTGGATCTCCCACTGCTGTAAGTCAAGTTGTGGGATGGCCACCTATAAGTGCTGCAAGGATGAACAGCTTGGTTAACCAGGCAAAGACTGCAAGGTCTGAAGATGACAAGGCAGATGGGGACAATTCTAAGGACACTTACAAGAAGAAAATCAACACTGGTAATAAGTCAACTGTGAAAGAGAAAGGGCATCTGGGATTTGTGAAGGTTAACATGGATGGAATTCCTATAGGGAGGAAAGTGGATTTAAATGCTCACACTTGCTATGAGACTTTAGCTCAAACACTTGAGGACATGTTCTTCAGCACCACTACAACTGGCAATTCAATCGGTAAGTTTCTTCGCCTTTGGCAGGATAGGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009880 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010051 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

316

Amino Acids

33.9

Weight (kDa)

8.72

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	130 - 301	4.6e-29	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04550 AT1G04550 AT2G33310 AT2G33310 AT2G33310
fragaria_vesca	FvH4_4g04700 FvH4_4g04700 FvH4_4g04700 FvH4_4g04700
malus_domestica	MD13G1222200.v1.1 MD16G1227100.v1.1
prunus_persica	Prupe.1G049200_v2.0.a1
pyrus_communis	pycom13g19660 pycom16g19020
rosa_chinensis	RchiOBHm_Chr4g0395511
rosa_laevigata	RLG00000009617
rosa_multiflora	Rmu_sc0008351.1_g000001 Rmu_sc0025234.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340450
rosa_rugosa	Rorug03G0355500 Rorug03G0355600
rosa_samantha	Rh4AG060700 Rh4AG061700 Rh4BG059700 Rh4CG065400 Rh4DG055600
rosa_wichuraiana	Rw4G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	21, 679
Acc16I	TGCGCA	1 cut(s)	5
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	807
AcuI	CTGAAG	3 cut(s)	600, 705, 871
AfiI	CCNNNNNNNGG	4 cut(s)	415, 456, 502, 937
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	3 cut(s)	219, 401, 912
AjnI	CCWGG	2 cut(s)	414, 663
AluBI	AGCT	4 cut(s)	386, 397, 654, 863
AluI	AGCT	4 cut(s)	386, 397, 654, 863
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	2 cut(s)	513, 848
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	2 cut(s)	406, 623
ApeKI	GCWGC	2 cut(s)	575, 638
ApoI	RAATTY	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	23, 406
AvaII	GGWCC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	562, 625
BccI	CCATC	5 cut(s)	56, 189, 615, 695, 797
BcgI	CGANNNNNNTGC	2 cut(s)	895, 929
BciT130I	CCWGG	2 cut(s)	416, 665
BcoDI	GTCTC	2 cut(s)	513, 848
BfaI	CTAG	2 cut(s)	9, 227
BfmI	CTRYAG	1 cut(s)	813
BisI	GCNGC	2 cut(s)	576, 639
BlsI	GCNGC	2 cut(s)	577, 640
Bme1390I	CCNGG	2 cut(s)	416, 665
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 406
BmiI	GGNNCC	2 cut(s)	24, 25
BmrFI	CCNGG	2 cut(s)	416, 665
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	893
BsaJI	CCNNGG	2 cut(s)	415, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 456, 502, 937
Bse1I	ACTGG	3 cut(s)	408, 748, 907
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	416, 665
BseDI	CCNNGG	2 cut(s)	415, 501
BseGI	GGATG	3 cut(s)	626, 651, 808
BseLI	CCNNNNNNNGG	4 cut(s)	415, 456, 502, 937
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	3 cut(s)	357, 384, 401
BseNI	ACTGG	3 cut(s)	408, 748, 907
BseXI	GCAGC	2 cut(s)	562, 625
BseYI	CCCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	408, 625
BsiHKAI	GWGCWC	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	9, 719
BslI	CCNNNNNNNGG	4 cut(s)	415, 456, 502, 937
BsmAI	GTCTC	2 cut(s)	513, 848
BsmFI	GGGAC	2 cut(s)	9, 719
BsnI	GGCC	2 cut(s)	408, 625
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	590
Bsp19I	CCATGG	1 cut(s)	501
BspANI	GGCC	2 cut(s)	408, 625
BspCNI	CTCAG	3 cut(s)	358, 385, 402
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	24, 25
BspPI	GGATC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	408, 748, 907
BssECI	CCNNGG	2 cut(s)	415, 501
BssMI	GATC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	416, 665
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	2 cut(s)	243, 576
BstAPI	GCANNNNNTGC	2 cut(s)	545, 674
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	4 cut(s)	366, 393, 410, 714
BstDSI	CCRYGG	1 cut(s)	501
BstENI	CCTNNNNNAGG	1 cut(s)	935
BstF5I	GGATG	3 cut(s)	626, 651, 808
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	593
BstMAI	GTCTC	2 cut(s)	513, 848
BstMBI	GATC	1 cut(s)	590
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 674
BstNI	CCWGG	2 cut(s)	416, 665
BstNSI	RCATGY	2 cut(s)	361, 883
BstSCI	CCNGG	2 cut(s)	414, 663
BstSFI	CTRYAG	1 cut(s)	813
BstV1I	GCAGC	2 cut(s)	562, 625
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	408, 625
BtgI	CCRYGG	1 cut(s)	501
BtsCI	GGATG	3 cut(s)	626, 651, 808
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	597, 741
Cac8I	GCNNGC	1 cut(s)	464
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	23, 406
CviAII	CATG	6 cut(s)	358, 456, 502, 512, 799, 880
CviJI	RGCY	9 cut(s)	386, 397, 408, 414, 449, 575, 625, 654, 863
CviKI_1	RGCY	9 cut(s)	386, 397, 408, 414, 449, 575, 625, 654, 863
DdeI	CTNAG	4 cut(s)	366, 393, 410, 714
DpnI	GATC	1 cut(s)	592
DpnII	GATC	1 cut(s)	590
DraI	TTTAAA	1 cut(s)	834
DrdI	GACNNNNNNGTC	2 cut(s)	21, 679
DseDI	GACNNNNNNGTC	2 cut(s)	21, 679
EaeI	YGGCCR	1 cut(s)	623
Eam1104I	CTCTTC	2 cut(s)	243, 576
EarI	CTCTTC	2 cut(s)	243, 576
Eco130I	CCWWGG	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	3 cut(s)	600, 705, 871
EcoNI	CCTNNNNNAGG	1 cut(s)	935
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	414, 663
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	6 cut(s)	361, 459, 505, 515, 802, 883
FaqI	GGGAC	2 cut(s)	9, 719
FatI	CATG	6 cut(s)	357, 455, 501, 511, 798, 879
Fnu4HI	GCNGC	2 cut(s)	576, 639
FokI	GGATG	3 cut(s)	633, 658, 815
Fsp4HI	GCNGC	2 cut(s)	576, 639
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	2 cut(s)	9, 227
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	576, 639
GsaI	CCCAGC	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	408, 625
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	6 cut(s)	361, 459, 505, 515, 802, 883
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	3 cut(s)	661, 756, 796
HindII	GTYRAC	3 cut(s)	661, 756, 796
HinfI	GANTC	4 cut(s)	305, 474, 515, 525
HpaI	GTTAAC	2 cut(s)	661, 796
Hpy166II	GTNNAC	3 cut(s)	661, 756, 796
Hpy188I	TCNGA	2 cut(s)	367, 685
Hpy188III	TCNNGA	5 cut(s)	227, 478, 512, 561, 948
Hpy8I	GTNNAC	3 cut(s)	661, 756, 796
HpyAV	CCTTC	6 cut(s)	97, 121, 132, 248, 507, 784
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	5 cut(s)	434, 455, 521, 641, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 674
HpyF3I	CTNAG	4 cut(s)	366, 393, 410, 714
Hsp92II	CATG	6 cut(s)	361, 459, 505, 515, 802, 883
HspAI	GCGC	1 cut(s)	4
KflI	GGGWCCC	1 cut(s)	23
KspAI	GTTAAC	2 cut(s)	661, 796
Kzo9I	GATC	1 cut(s)	590
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	2 cut(s)	562, 625
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	2 cut(s)	9, 227
MalI	GATC	1 cut(s)	592
MboI	GATC	1 cut(s)	590
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	625
MluCI	AATT	3 cut(s)	709, 807, 907
MluNI	TGGCCA	1 cut(s)	625
MlyI	GAGTC	2 cut(s)	314, 524
Mox20I	TGGCCA	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	625
MseI	TTAA	4 cut(s)	248, 660, 795, 833
Msp20I	TGGCCA	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	416, 665
MvaI	CCWGG	2 cut(s)	416, 665
MwoI	GCNNNNNNNGC	2 cut(s)	545, 674
NcoI	CCATGG	1 cut(s)	501
NdeII	GATC	1 cut(s)	590
NlaIII	CATG	6 cut(s)	361, 459, 505, 515, 802, 883
NlaIV	GGNNCC	2 cut(s)	24, 25
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	2 cut(s)	361, 883
PagI	TCATGA	1 cut(s)	511
PciI	ACATGT	1 cut(s)	879
PfeI	GAWTC	2 cut(s)	474, 525
PkrI	GCNGC	2 cut(s)	577, 640
PleI	GAGTC	2 cut(s)	313, 523
PpsI	GAGTC	2 cut(s)	313, 523
PpuMI	RGGWCCY	1 cut(s)	23
PscI	ACATGT	1 cut(s)	879
Psp5II	RGGWCCY	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	414, 663
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	2 cut(s)	414, 663
PspN4I	GGNNCC	2 cut(s)	24, 25
PspPI	GGNCC	2 cut(s)	23, 406
PspPPI	RGGWCCY	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	386
SaqAI	TTAA	4 cut(s)	248, 660, 795, 833
SatI	GCNGC	2 cut(s)	576, 639
Sau3AI	GATC	1 cut(s)	590
Sau96I	GGNCC	2 cut(s)	23, 406
SchI	GAGTC	2 cut(s)	314, 524
ScrFI	CCNGG	2 cut(s)	416, 665
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	23
SmiI	ATTTAAAT	1 cut(s)	834
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
Sse9I	AATT	3 cut(s)	709, 807, 907
SspMI	CTAG	2 cut(s)	9, 227
StyD4I	CCNGG	2 cut(s)	414, 663
StyI	CCWWGG	1 cut(s)	501
SwaI	ATTTAAAT	1 cut(s)	834
TaaI	ACNGT	1 cut(s)	760
TaqI	TCGA	1 cut(s)	170
TasI	AATT	3 cut(s)	709, 807, 907
TfiI	GAWTC	2 cut(s)	474, 525
Tru1I	TTAA	4 cut(s)	248, 660, 795, 833
Tru9I	TTAA	4 cut(s)	248, 660, 795, 833
TscAI	CASTG	2 cut(s)	604, 748
TseI	GCWGC	2 cut(s)	575, 638
TspDTI	ATGAA	4 cut(s)	79, 85, 366, 662
TspRI	CASTG	2 cut(s)	604, 748
VpaK11BI	GGWCC	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	935
XapI	RAATTY	1 cut(s)	807
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	2 cut(s)	361, 883
XspI	CTAG	2 cut(s)	9, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.